BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00009019
         (854 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...   442   e-122
ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II su...   434   e-119
ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II su...   429   e-118
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun...   429   e-118
emb|CBI18915.3| unnamed protein product [Vitis vinifera]              427   e-117

>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
           vinifera]
          Length = 1848

 Score =  442 bits (1138), Expect = e-122
 Identities = 212/235 (90%), Positives = 225/235 (95%)
 Frame = +1

Query: 148 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 327
           MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI
Sbjct: 1   MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 328 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDSK 507
           DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEED K
Sbjct: 61  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 508 FKQAQRIRNPKHRLKKVLDACKNKLKCEGGDDSDAQGQDLDEPVKKSRGGCGAQQPKITI 687
           FKQAQ+IRNPK+RLKK+LDACKNK KCEGGD+ + Q  D DEPVKKSRGGCGAQQPK+TI
Sbjct: 121 FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180

Query: 688 DGMKMVAEYKAQRKKSDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCVFLGLD 852
           +GMKM+AEYK QRKK+DD EQLPEPVERKQQLSAERVL+VLKRISDEDC+ LGL+
Sbjct: 181 EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLN 235


>ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
           [Glycine max]
          Length = 1827

 Score =  434 bits (1116), Expect = e-119
 Identities = 210/235 (89%), Positives = 221/235 (94%)
 Frame = +1

Query: 148 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 327
           MD+RFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1   MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 328 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDSK 507
           DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADE D K
Sbjct: 61  DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 508 FKQAQRIRNPKHRLKKVLDACKNKLKCEGGDDSDAQGQDLDEPVKKSRGGCGAQQPKITI 687
           FKQA RIRNPK+RLKK+LDACKNK KCEGGD+ D  GQD DEPVKKSRGGCGAQQPKITI
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180

Query: 688 DGMKMVAEYKAQRKKSDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCVFLGLD 852
           +GMKM+AEYKAQRKKSDDQEQLPEPVERKQ LSAERVL VLKRISDEDC  LGL+
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLN 235


>ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
           [Glycine max]
          Length = 1827

 Score =  429 bits (1104), Expect = e-118
 Identities = 208/235 (88%), Positives = 220/235 (93%)
 Frame = +1

Query: 148 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 327
           MD+RFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1   MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 328 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDSK 507
           DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADE D K
Sbjct: 61  DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 508 FKQAQRIRNPKHRLKKVLDACKNKLKCEGGDDSDAQGQDLDEPVKKSRGGCGAQQPKITI 687
           FKQA RIRNPK+RLKK+LDACKNK KCEGGD+ D  GQD +E VKKSRGGCGAQQPKITI
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTEESVKKSRGGCGAQQPKITI 180

Query: 688 DGMKMVAEYKAQRKKSDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCVFLGLD 852
           +GMKM+AEYKAQRKKSDDQEQLPEPVERKQ LSAERVL VLKRISDEDC  LGL+
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLN 235


>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
           communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
           polymerase II largest subunit, putative [Ricinus
           communis]
          Length = 1855

 Score =  429 bits (1102), Expect = e-118
 Identities = 206/235 (87%), Positives = 220/235 (93%)
 Frame = +1

Query: 148 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 327
           MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIE SETTERGKPKPGGLSD RLGTI
Sbjct: 1   MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60

Query: 328 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDSK 507
           DRKMKCETCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSKILADEED K
Sbjct: 61  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 508 FKQAQRIRNPKHRLKKVLDACKNKLKCEGGDDSDAQGQDLDEPVKKSRGGCGAQQPKITI 687
           FKQA +I+NPK+RLKK+LDACKNK KCEGGDD D   QD DEPVKKSRGGCGAQQP++TI
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180

Query: 688 DGMKMVAEYKAQRKKSDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCVFLGLD 852
           +GMKM+AEYKAQRKK+DDQEQLPEPVERKQ L+AERVL VLKRISD+DC  LG +
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFN 235


>emb|CBI18915.3| unnamed protein product [Vitis vinifera]
          Length = 1565

 Score =  427 bits (1097), Expect = e-117
 Identities = 212/265 (80%), Positives = 225/265 (84%), Gaps = 30/265 (11%)
 Frame = +1

Query: 148 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 327
           MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI
Sbjct: 1   MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 328 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADE---- 495
           DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADE    
Sbjct: 61  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADELTEN 120

Query: 496 --------------------------EDSKFKQAQRIRNPKHRLKKVLDACKNKLKCEGG 597
                                     ED KFKQAQ+IRNPK+RLKK+LDACKNK KCEGG
Sbjct: 121 VKWISKSKFANMKSLKLGHSLLHCKSEDHKFKQAQKIRNPKNRLKKILDACKNKSKCEGG 180

Query: 598 DDSDAQGQDLDEPVKKSRGGCGAQQPKITIDGMKMVAEYKAQRKKSDDQEQLPEPVERKQ 777
           D+ + Q  D DEPVKKSRGGCGAQQPK+TI+GMKM+AEYK QRKK+DD EQLPEPVERKQ
Sbjct: 181 DEIETQALDSDEPVKKSRGGCGAQQPKLTIEGMKMIAEYKIQRKKNDDPEQLPEPVERKQ 240

Query: 778 QLSAERVLSVLKRISDEDCVFLGLD 852
           QLSAERVL+VLKRISDEDC+ LGL+
Sbjct: 241 QLSAERVLNVLKRISDEDCILLGLN 265