BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00008883
         (1660 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   704   0.0  
emb|CBI18448.3| unnamed protein product [Vitis vinifera]              695   0.0  
ref|XP_003549365.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   659   0.0  
ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [...   653   0.0  
ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   640   0.0  

>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
            vinifera]
          Length = 479

 Score =  704 bits (1818), Expect = 0.0
 Identities = 347/473 (73%), Positives = 397/473 (83%), Gaps = 1/473 (0%)
 Frame = +3

Query: 120  KGVLPTVRHYSXXXXXXXXXXXXXXXVSNNIAQLGSPKKEIKPRQLLSLPAFPAKLQHPL 299
            +G+ P VRHYS               VSNN+AQLGSPK+  KPRQLLSLP FPA   HPL
Sbjct: 10   QGLFPVVRHYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPA---HPL 66

Query: 300  PGRNLGGHYGQPSHVTAVTWLKYYFDEICGSVIQSHFNKGLVQMECSDHIDTSKGEQDLR 479
            PG++L    G P+HVTA++W+KYYFDEI GSV+QSHFNKGLV ME S+  D+S  ++   
Sbjct: 67   PGKSLVNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQI 126

Query: 480  QSLRKINPNKIMEVGAKIYVPVSVAETKISKRFNVIPSGTLYPNADEIEYLQRLVMYKDS 659
            + LRKI PN++ME G +IYVPVSVAE +ISKRF+ IPSGTL+PNADEIEYLQRLV YKD 
Sbjct: 127  KPLRKIKPNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLVTYKDP 186

Query: 660  AIMILNKPPKLPVKGNLPVHNSMDALAAGALSYGFEEGPKLVHRLDRESSGLLLMGRSKE 839
            AI++LNKPPK+P+KGNLPVHNSMDALAA AL++ +EEGPKLVHRLDRESSGLLLMGR+KE
Sbjct: 187  AILVLNKPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKE 246

Query: 840  SLTRLQWLFSNTIKEKSPYKSWNDACEATMQRYWALVIGSPKEKQGVIHAPLSKVLLNDG 1019
            S+  L WLFS+  K KS  K+W+DACEAT QRYWALVIGSPK+K+GVIHAPLSKVLL+DG
Sbjct: 247  SVAHLHWLFSDINKAKSLSKAWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDG 306

Query: 1020 KTERVIIAHPSGIEASQEAITEYRVLGPTINGCSWVELLPHTGRKHQLRVHCAEALGTPI 1199
            KTERVI+A+ SG+EASQEAITEYRVLGP INGCSW+EL P T RKHQLRVHCAEALGTPI
Sbjct: 307  KTERVILANQSGLEASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPI 366

Query: 1200 VGDYKYGWYVHSKWKQMPRVDFEQTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELV 1379
            VGDYKYGW+VH +WKQMPRVD E TTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCREL+
Sbjct: 367  VGDYKYGWFVHRRWKQMPRVDLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELI 426

Query: 1380 LPNIAKFQEVLDGK-RQLDKQSDLSSKPDLLRFVAPMPSHMKISWNLMSSYLV 1535
            LPNIAKF  +LD K +  ++   LS KPD+LRFVA MP+HMKISWNLMSSYLV
Sbjct: 427  LPNIAKFLPILDPKPKNQNQYPKLSLKPDILRFVASMPNHMKISWNLMSSYLV 479


>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  695 bits (1794), Expect = 0.0
 Identities = 344/475 (72%), Positives = 397/475 (83%), Gaps = 3/475 (0%)
 Frame = +3

Query: 120  KGVLPTVRHYSXXXXXXXXXXXXXXXVSNNIAQLGSPKKEIKPRQLLSLPAFPAKLQHPL 299
            +G+ P VRHYS               VSNN+AQLGSPK+  KPRQLLSLP FPA   HPL
Sbjct: 10   QGLFPVVRHYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPA---HPL 66

Query: 300  PGRNLGGHYGQPSHVTAVTWLKYYFDEICGSVIQSHFNKGLVQMECSDHIDTSKGEQDLR 479
            PG++L    G P+HVTA++W+KYYFDEI GSV+QSHFNKGLV ME S+  D+S  ++   
Sbjct: 67   PGKSLVNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQI 126

Query: 480  QSLRKINPNKIMEVGAKIYVPVSVAETKISKRFNVIPSGTLYPNADEIEYLQRL--VMYK 653
            + LRKI PN++ME G +IYVPVSVAE +ISKRF+ IPSGTL+PNADEIEYLQRL  + ++
Sbjct: 127  KPLRKIKPNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLWLLKFQ 186

Query: 654  DSAIMILNKPPKLPVKGNLPVHNSMDALAAGALSYGFEEGPKLVHRLDRESSGLLLMGRS 833
            D AI++LNKPPK+P+KGNLPVHNSMDALAA AL++ +EEGPKLVHRLDRESSGLLLMGR+
Sbjct: 187  DPAILVLNKPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRT 246

Query: 834  KESLTRLQWLFSNTIKEKSPYKSWNDACEATMQRYWALVIGSPKEKQGVIHAPLSKVLLN 1013
            KES+  L WLFS+  K KS  K+W+DACEAT QRYWALVIGSPK+K+GVIHAPLSKVLL+
Sbjct: 247  KESVAHLHWLFSDINKAKSLSKAWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLD 306

Query: 1014 DGKTERVIIAHPSGIEASQEAITEYRVLGPTINGCSWVELLPHTGRKHQLRVHCAEALGT 1193
            DGKTERVI+A+ SG+EASQEAITEYRVLGP INGCSW+EL P T RKHQLRVHCAEALGT
Sbjct: 307  DGKTERVILANQSGLEASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGT 366

Query: 1194 PIVGDYKYGWYVHSKWKQMPRVDFEQTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRE 1373
            PIVGDYKYGW+VH +WKQMPRVD E TTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRE
Sbjct: 367  PIVGDYKYGWFVHRRWKQMPRVDLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRE 426

Query: 1374 LVLPNIAKFQEVLDGK-RQLDKQSDLSSKPDLLRFVAPMPSHMKISWNLMSSYLV 1535
            L+LPNIAKF  +LD K +  ++   LS KPD+LRFVA MP+HMKISWNLMSSYLV
Sbjct: 427  LILPNIAKFLPILDPKPKNQNQYPKLSLKPDILRFVASMPNHMKISWNLMSSYLV 481


>ref|XP_003549365.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Glycine
            max]
          Length = 554

 Score =  659 bits (1701), Expect = 0.0
 Identities = 327/470 (69%), Positives = 381/470 (81%)
 Frame = +3

Query: 126  VLPTVRHYSXXXXXXXXXXXXXXXVSNNIAQLGSPKKEIKPRQLLSLPAFPAKLQHPLPG 305
            +L   RHYS               VSNNIA+L +PK+  KPRQLLSLP FP    HPLP 
Sbjct: 92   LLFVARHYSRIQPPRPVSVEPVISVSNNIARLDAPKEGPKPRQLLSLPPFPG---HPLPD 148

Query: 306  RNLGGHYGQPSHVTAVTWLKYYFDEICGSVIQSHFNKGLVQMECSDHIDTSKGEQDLRQS 485
            ++      Q  +VTAV W+KYYF    GSVI+SHF +GLVQME  D   T K EQ   + 
Sbjct: 149  KSSISGSRQRDYVTAVNWIKYYFKGTWGSVIESHFREGLVQMEADDS-STQKEEQ--MKP 205

Query: 486  LRKINPNKIMEVGAKIYVPVSVAETKISKRFNVIPSGTLYPNADEIEYLQRLVMYKDSAI 665
            +RKI PN++M+ GA+++VPVS+ ET+ISKR++ IPSGTLYPNADEI+YLQRLV+YKDSAI
Sbjct: 206  MRKIRPNEVMKRGARVHVPVSICETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAI 265

Query: 666  MILNKPPKLPVKGNLPVHNSMDALAAGALSYGFEEGPKLVHRLDRESSGLLLMGRSKESL 845
            ++LNKPPKLPVKG+LPVHNSMDALAA ALSY ++EGPKLVHRLDRESSG+LL+GR+K+S+
Sbjct: 266  IVLNKPPKLPVKGSLPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGILLLGRTKDSV 325

Query: 846  TRLQWLFSNTIKEKSPYKSWNDACEATMQRYWALVIGSPKEKQGVIHAPLSKVLLNDGKT 1025
            + LQWLFSN    KS  K WN+ACEAT QRYWALVIG+PKEK+G+IHAPLSKVLLNDGKT
Sbjct: 326  SHLQWLFSNINNAKSSCKDWNEACEATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKT 385

Query: 1026 ERVIIAHPSGIEASQEAITEYRVLGPTINGCSWVELLPHTGRKHQLRVHCAEALGTPIVG 1205
            ER+I+AH S +E  QEA+TEYRVLGP INGCSWVEL P T RKHQLRVHCAEALGTPIVG
Sbjct: 386  ERIILAHHSSVEPRQEAVTEYRVLGPQINGCSWVELRPLTYRKHQLRVHCAEALGTPIVG 445

Query: 1206 DYKYGWYVHSKWKQMPRVDFEQTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELVLP 1385
            DYKYGW+VHS+WKQMPRVD E TTGKPYK+RRPEGLDVQKGSVLSKVPLLHLHCRELVLP
Sbjct: 446  DYKYGWFVHSRWKQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLP 505

Query: 1386 NIAKFQEVLDGKRQLDKQSDLSSKPDLLRFVAPMPSHMKISWNLMSSYLV 1535
            NI KF  VL+   + + ++ L  +PD+LRFVA MPSHM+ISWNLMSSYLV
Sbjct: 506  NIVKFMHVLNNSSE-ELRTSLREQPDVLRFVATMPSHMRISWNLMSSYLV 554


>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 468

 Score =  653 bits (1685), Expect = 0.0
 Identities = 334/479 (69%), Positives = 377/479 (78%)
 Frame = +3

Query: 99   MNKTLLRKGVLPTVRHYSXXXXXXXXXXXXXXXVSNNIAQLGSPKKEIKPRQLLSLPAFP 278
            M K +  + V+   R YS               VSNN+A LGSPK   KPRQLLSLP FP
Sbjct: 1    MWKNIYCRRVVSQGRSYSRIAPPPPAYANPVIRVSNNVAHLGSPKDGPKPRQLLSLPPFP 60

Query: 279  AKLQHPLPGRNLGGHYGQPSHVTAVTWLKYYFDEICGSVIQSHFNKGLVQMECSDHIDTS 458
                 PLPGRN        SHVTA++W+KYYFDEI  S IQSHFNKGL  +EC +   + 
Sbjct: 61   GL---PLPGRN-----SMASHVTAISWVKYYFDEILDSAIQSHFNKGLAHIECPN--GSG 110

Query: 459  KGEQDLRQSLRKINPNKIMEVGAKIYVPVSVAETKISKRFNVIPSGTLYPNADEIEYLQR 638
              E   + SLRKI  N IME GA+++V VSVAET+ISKRF+ IPSGTLYPNADEI+YLQR
Sbjct: 111  SIEYGGQMSLRKIKHNDIMEAGARVHVAVSVAETRISKRFDTIPSGTLYPNADEIQYLQR 170

Query: 639  LVMYKDSAIMILNKPPKLPVKGNLPVHNSMDALAAGALSYGFEEGPKLVHRLDRESSGLL 818
            LV YKDSAI++LNKPP+LPVKGNLP+HNSMDALAA ALSY ++EGPKLV RLDRESSGLL
Sbjct: 171  LVKYKDSAIIVLNKPPRLPVKGNLPLHNSMDALAAAALSYDYDEGPKLVQRLDRESSGLL 230

Query: 819  LMGRSKESLTRLQWLFSNTIKEKSPYKSWNDACEATMQRYWALVIGSPKEKQGVIHAPLS 998
            LMGR+KES+  LQWLFS+  K  S  K+WNDAC+AT QRYWALVIGSPKEK+G+I APLS
Sbjct: 231  LMGRTKESIDHLQWLFSDVNKSNSRCKAWNDACKATYQRYWALVIGSPKEKEGLIRAPLS 290

Query: 999  KVLLNDGKTERVIIAHPSGIEASQEAITEYRVLGPTINGCSWVELLPHTGRKHQLRVHCA 1178
            KVLLNDGKTERV++A  SG+EASQEA+TEYRVLGP INGCSW+EL P T RKHQLRVHCA
Sbjct: 291  KVLLNDGKTERVVLAQHSGLEASQEALTEYRVLGPRINGCSWIELRPLTSRKHQLRVHCA 350

Query: 1179 EALGTPIVGDYKYGWYVHSKWKQMPRVDFEQTTGKPYKMRRPEGLDVQKGSVLSKVPLLH 1358
            EALGTPIVGDYKYGW VH +WKQMPRVD E  +GKPYK+RRP GLDVQKGSVLSKVPLLH
Sbjct: 351  EALGTPIVGDYKYGWCVHQRWKQMPRVDIEPFSGKPYKLRRPAGLDVQKGSVLSKVPLLH 410

Query: 1359 LHCRELVLPNIAKFQEVLDGKRQLDKQSDLSSKPDLLRFVAPMPSHMKISWNLMSSYLV 1535
            LHCRE VLPNIAKF  VL+ K + +    L +KPDLLRFVA MP+HMKISWNLMSSYLV
Sbjct: 411  LHCREFVLPNIAKFLAVLNEKSE-NIHPALDAKPDLLRFVASMPTHMKISWNLMSSYLV 468


>ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
            sativus]
          Length = 471

 Score =  640 bits (1651), Expect = 0.0
 Identities = 324/474 (68%), Positives = 373/474 (78%)
 Frame = +3

Query: 114  LRKGVLPTVRHYSXXXXXXXXXXXXXXXVSNNIAQLGSPKKEIKPRQLLSLPAFPAKLQH 293
            +R+ +L   R YS               VSNNIAQLGSPK+  K RQLLSLP FP    +
Sbjct: 5    MRRHLLLATRCYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPG---Y 61

Query: 294  PLPGRNLGGHYGQPSHVTAVTWLKYYFDEICGSVIQSHFNKGLVQMECSDHIDTSKGEQD 473
            PLPG+N  G  G+ +HVTA+ W+KYYFDEI  S IQSHF KGLVQ+EC         E+ 
Sbjct: 62   PLPGKNQVGVSGESTHVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVECPQL--GGLDEKG 119

Query: 474  LRQSLRKINPNKIMEVGAKIYVPVSVAETKISKRFNVIPSGTLYPNADEIEYLQRLVMYK 653
              + +RKI   +IME GA+I++PVSVAE K+++RF+ IPSGTLYPNADEI+YLQRLV YK
Sbjct: 120  NLKPMRKIRSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKYLQRLVKYK 179

Query: 654  DSAIMILNKPPKLPVKGNLPVHNSMDALAAGALSYGFEEGPKLVHRLDRESSGLLLMGRS 833
            DSAI++LNKPPKLPVKG LPVHNSMDALA  ALSY +++GPKLVHRLDRESSG+LLMGR+
Sbjct: 180  DSAIIVLNKPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRT 239

Query: 834  KESLTRLQWLFSNTIKEKSPYKSWNDACEATMQRYWALVIGSPKEKQGVIHAPLSKVLLN 1013
            KES+  LQWLFSN    K   K+W +AC AT Q+YWALVIG P+E++GVI APLSKVLL+
Sbjct: 240  KESVDHLQWLFSNIRNAKFTCKAWEEACNATYQKYWALVIGCPREREGVISAPLSKVLLD 299

Query: 1014 DGKTERVIIAHPSGIEASQEAITEYRVLGPTINGCSWVELLPHTGRKHQLRVHCAEALGT 1193
            DGKTERVI+A+ + IEASQEAITEYRVLGPTINGCSW+EL P T RKHQLR+HCAEALGT
Sbjct: 300  DGKTERVILANKASIEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQLRIHCAEALGT 359

Query: 1194 PIVGDYKYGWYVHSKWKQMPRVDFEQTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRE 1373
            PIVGDYKYGW+VH +WKQMPRVD E  +G+PYK+RRPEGLDVQKGSVLSKVPLLHLHCRE
Sbjct: 360  PIVGDYKYGWFVHRRWKQMPRVDVEPISGRPYKLRRPEGLDVQKGSVLSKVPLLHLHCRE 419

Query: 1374 LVLPNIAKFQEVLDGKRQLDKQSDLSSKPDLLRFVAPMPSHMKISWNLMSSYLV 1535
            LVLPNIAKF  V  GK      S   S  DLLRFVA MPSHM+ISWNLMSSYLV
Sbjct: 420  LVLPNIAKFLNVFYGKGPNRPVSSFDS--DLLRFVARMPSHMRISWNLMSSYLV 471