BLASTX nr result
ID: Coptis21_contig00008822
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00008822
(734 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002264417.1| PREDICTED: KH domain-containing protein At4g... 203 5e-60
emb|CBI17917.3| unnamed protein product [Vitis vinifera] 203 5e-60
ref|XP_004149510.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-bin... 193 6e-57
ref|XP_003546434.1| PREDICTED: KH domain-containing protein At4g... 195 1e-56
ref|XP_002330818.1| predicted protein [Populus trichocarpa] gi|2... 192 2e-56
>ref|XP_002264417.1| PREDICTED: KH domain-containing protein At4g18375 isoform 1 [Vitis
vinifera]
Length = 466
Score = 203 bits (517), Expect(2) = 5e-60
Identities = 105/163 (64%), Positives = 130/163 (79%)
Frame = -3
Query: 528 ASVRVLSGDEVPHYATSDERVVEIQGESLKVLKALEAVIGHLRKFLVDHSIIPLFEKVNN 349
ASVRVLSGDEVP YA +DER+VE+QGE+LKV KALEAV+GHLRKFLVDHS++PLFE+ N
Sbjct: 203 ASVRVLSGDEVPFYAAADERIVELQGEALKVQKALEAVVGHLRKFLVDHSVLPLFERTYN 262
Query: 348 PTVSQERPAETWADKAQSLVQTASQVTSQAGITSDYPLSIKRDSLFLDRDTQLESQMHHS 169
T+SQ+R ++TWADK SL+ TSQ G+ SDY L KR+SL+LDR+TQ+E HS
Sbjct: 263 ATISQDRQSDTWADK--SLLHG----TSQTGMGSDYSLPAKRESLYLDRETQME----HS 312
Query: 168 SLSLYGQDPGFPGLRTSGLSRASAAIISQITQTMQIPLAYAED 40
L +YGQ+ G G+R+SGL RA A I++QI QTMQIPL+YAED
Sbjct: 313 GLPMYGQEHGLSGIRSSGLGRAGAPIVTQIAQTMQIPLSYAED 355
Score = 54.3 bits (129), Expect(2) = 5e-60
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = -1
Query: 701 CSIRLLVASSQAINLIGKQGSQIKAIQESSG 609
CSIRLLVAS+QAINLIGKQGS IK+IQES+G
Sbjct: 172 CSIRLLVASTQAINLIGKQGSLIKSIQESTG 202
>emb|CBI17917.3| unnamed protein product [Vitis vinifera]
Length = 364
Score = 203 bits (517), Expect(2) = 5e-60
Identities = 105/163 (64%), Positives = 130/163 (79%)
Frame = -3
Query: 528 ASVRVLSGDEVPHYATSDERVVEIQGESLKVLKALEAVIGHLRKFLVDHSIIPLFEKVNN 349
ASVRVLSGDEVP YA +DER+VE+QGE+LKV KALEAV+GHLRKFLVDHS++PLFE+ N
Sbjct: 101 ASVRVLSGDEVPFYAAADERIVELQGEALKVQKALEAVVGHLRKFLVDHSVLPLFERTYN 160
Query: 348 PTVSQERPAETWADKAQSLVQTASQVTSQAGITSDYPLSIKRDSLFLDRDTQLESQMHHS 169
T+SQ+R ++TWADK SL+ TSQ G+ SDY L KR+SL+LDR+TQ+E HS
Sbjct: 161 ATISQDRQSDTWADK--SLLHG----TSQTGMGSDYSLPAKRESLYLDRETQME----HS 210
Query: 168 SLSLYGQDPGFPGLRTSGLSRASAAIISQITQTMQIPLAYAED 40
L +YGQ+ G G+R+SGL RA A I++QI QTMQIPL+YAED
Sbjct: 211 GLPMYGQEHGLSGIRSSGLGRAGAPIVTQIAQTMQIPLSYAED 253
Score = 54.3 bits (129), Expect(2) = 5e-60
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = -1
Query: 701 CSIRLLVASSQAINLIGKQGSQIKAIQESSG 609
CSIRLLVAS+QAINLIGKQGS IK+IQES+G
Sbjct: 70 CSIRLLVASTQAINLIGKQGSLIKSIQESTG 100
>ref|XP_004149510.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 3-like
[Cucumis sativus]
Length = 468
Score = 193 bits (490), Expect(2) = 6e-57
Identities = 98/163 (60%), Positives = 124/163 (76%)
Frame = -3
Query: 528 ASVRVLSGDEVPHYATSDERVVEIQGESLKVLKALEAVIGHLRKFLVDHSIIPLFEKVNN 349
ASVRVLSGDE+P YA +DER+VE+QGESLKVLKALE V+GHLRKFLVDHS++PLFEK N
Sbjct: 200 ASVRVLSGDEMPFYAGADERMVELQGESLKVLKALEGVVGHLRKFLVDHSVLPLFEKSFN 259
Query: 348 PTVSQERPAETWADKAQSLVQTASQVTSQAGITSDYPLSIKRDSLFLDRDTQLESQMHHS 169
SQ+R ETWADK+ L SQ+ I+++Y S KR+SLFLDR+ +S + S
Sbjct: 260 TPASQDRQTETWADKSSLL------TASQSIISAEYAPSTKRESLFLDREAHFDSHISSS 313
Query: 168 SLSLYGQDPGFPGLRTSGLSRASAAIISQITQTMQIPLAYAED 40
+SLYGQD P +R+SG+ R+ I++Q+TQTMQIPL+YAED
Sbjct: 314 GISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED 356
Score = 54.3 bits (129), Expect(2) = 6e-57
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = -1
Query: 701 CSIRLLVASSQAINLIGKQGSQIKAIQESSG 609
CSIRLLVAS+QAINLIGKQGS IK+IQES+G
Sbjct: 169 CSIRLLVASTQAINLIGKQGSLIKSIQESTG 199
>ref|XP_003546434.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 442
Score = 195 bits (496), Expect(2) = 1e-56
Identities = 102/163 (62%), Positives = 126/163 (77%)
Frame = -3
Query: 528 ASVRVLSGDEVPHYATSDERVVEIQGESLKVLKALEAVIGHLRKFLVDHSIIPLFEKVNN 349
ASVRVLSGDEV YAT DER+VEIQGE+LKVLKALEAV+GHLRKFLVDHS++PLFEK N
Sbjct: 176 ASVRVLSGDEVQSYATVDERIVEIQGEALKVLKALEAVVGHLRKFLVDHSVLPLFEKTYN 235
Query: 348 PTVSQERPAETWADKAQSLVQTASQVTSQAGITSDYPLSIKRDSLFLDRDTQLESQMHHS 169
+ SQ+R AETW+DK SL+ T TS+ I +D P S KRDS+ DR++QL+S + S
Sbjct: 236 ASTSQDRQAETWSDK--SLLHT----TSRTSIFADIPYSTKRDSVLADRESQLDSFLPSS 289
Query: 168 SLSLYGQDPGFPGLRTSGLSRASAAIISQITQTMQIPLAYAED 40
++SLYGQD G+R+S L R A I++ + QTMQIPL+YAED
Sbjct: 290 TMSLYGQDSSLSGVRSSALGRVGAPIVTTVIQTMQIPLSYAED 332
Score = 50.8 bits (120), Expect(2) = 1e-56
Identities = 25/30 (83%), Positives = 29/30 (96%)
Frame = -1
Query: 701 CSIRLLVASSQAINLIGKQGSQIKAIQESS 612
CSIRLLVAS+QAINLIGKQGS IK+IQE++
Sbjct: 145 CSIRLLVASTQAINLIGKQGSLIKSIQENT 174
>ref|XP_002330818.1| predicted protein [Populus trichocarpa] gi|222872620|gb|EEF09751.1|
predicted protein [Populus trichocarpa]
Length = 405
Score = 192 bits (487), Expect(2) = 2e-56
Identities = 95/163 (58%), Positives = 122/163 (74%)
Frame = -3
Query: 528 ASVRVLSGDEVPHYATSDERVVEIQGESLKVLKALEAVIGHLRKFLVDHSIIPLFEKVNN 349
A+V V++ DE+P YATSDER+VEI GE++KV KALEAVIG LRKFLVDHS+IP+FEK N
Sbjct: 138 AAVHVMAEDELPSYATSDERIVEIHGEAMKVFKALEAVIGQLRKFLVDHSVIPIFEKTYN 197
Query: 348 PTVSQERPAETWADKAQSLVQTASQVTSQAGITSDYPLSIKRDSLFLDRDTQLESQMHHS 169
T+SQE PA+ D AQ + +A T +GI SDY LS KRD + +TQ E ++
Sbjct: 198 ATISQECPADARPDIAQPSLHSAYVPTIPSGIASDYSLSFKRDPSIYEHETQFEHKISQP 257
Query: 168 SLSLYGQDPGFPGLRTSGLSRASAAIISQITQTMQIPLAYAED 40
LS+YGQDPG G R++GL RA+A I++Q+TQTMQ+PL+YAED
Sbjct: 258 GLSIYGQDPGIVGFRSTGLGRAAAPIVTQVTQTMQVPLSYAED 300
Score = 53.9 bits (128), Expect(2) = 2e-56
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = -1
Query: 701 CSIRLLVASSQAINLIGKQGSQIKAIQESSG 609
CSIRLLVASSQAINLIGKQGS IK+IQE++G
Sbjct: 107 CSIRLLVASSQAINLIGKQGSIIKSIQENTG 137