BLASTX nr result

ID: Coptis21_contig00008792 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00008792
         (543 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269948.1| PREDICTED: uncharacterized protein LOC100243...    60   2e-07
ref|XP_002530671.1| conserved hypothetical protein [Ricinus comm...    59   6e-07
ref|XP_002331464.1| predicted protein [Populus trichocarpa] gi|2...    55   9e-06

>ref|XP_002269948.1| PREDICTED: uncharacterized protein LOC100243925 [Vitis vinifera]
          Length = 396

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 12/81 (14%)
 Frame = +2

Query: 5   RDLRGDRRNFGPA-AGDYRQGAASSYSQ-----------SYPGPGEGQRFSQMEQRDGMQ 148
           RD+RGD RN+ P  +G+Y QG   SY Q           +  G GEGQRFSQ++QR+ MQ
Sbjct: 320 RDVRGDNRNYNPQHSGNYGQGTGGSYGQGMGSGPSGYGQAQQGHGEGQRFSQVDQRNDMQ 379

Query: 149 GGEQQNFNPPMGQMRNDQGQY 211
             EQ+N+ PP G    +QG+Y
Sbjct: 380 -DEQRNY-PPTG--NTNQGRY 396


>ref|XP_002530671.1| conserved hypothetical protein [Ricinus communis]
           gi|223529764|gb|EEF31702.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 394

 Score = 58.5 bits (140), Expect = 6e-07
 Identities = 36/72 (50%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
 Frame = +2

Query: 5   RDLRGDRRNFGPAAGD---------YRQGAASSYSQSYPGPGEGQRFSQMEQRDGMQGGE 157
           RD RGD RNF P+  +         Y QG  + Y Q YPG  EG RFSQMEQR+    GE
Sbjct: 328 RDFRGDNRNFSPSHAETCGQGTNAGYGQGTNAGYGQGYPG--EGPRFSQMEQRNIQ--GE 383

Query: 158 QQNFNPPMGQMR 193
           Q N+  PMGQ R
Sbjct: 384 QANYT-PMGQTR 394


>ref|XP_002331464.1| predicted protein [Populus trichocarpa] gi|222873542|gb|EEF10673.1|
           predicted protein [Populus trichocarpa]
          Length = 886

 Score = 54.7 bits (130), Expect = 9e-06
 Identities = 35/62 (56%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
 Frame = +2

Query: 5   RDLRGDRRNFGPA-AGDYRQGAASSYSQSYPGPGEGQRFSQMEQRDGMQGGEQQNFNPPM 181
           RD RGD  N+ P   G+Y QG  +SY Q +  PGEGQR +QME R GMQ GEQ N+  PM
Sbjct: 321 RDYRGDNWNYSPTHGGNYGQGGNTSYGQRH--PGEGQRSAQMELR-GMQ-GEQGNY-APM 375

Query: 182 GQ 187
           GQ
Sbjct: 376 GQ 377


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