BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00008742
         (1234 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI22720.3| unnamed protein product [Vitis vinifera]              387   e-105
ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III s...   375   e-101
emb|CBI26210.3| unnamed protein product [Vitis vinifera]              300   7e-79
ref|XP_003555382.1| PREDICTED: DNA-directed RNA polymerase III s...   283   6e-74
ref|XP_003535613.1| PREDICTED: DNA-directed RNA polymerase III s...   281   2e-73

>emb|CBI22720.3| unnamed protein product [Vitis vinifera]
          Length = 524

 Score =  387 bits (993), Expect = e-105
 Identities = 213/387 (55%), Positives = 279/387 (72%), Gaps = 12/387 (3%)
 Frame = +3

Query: 6    VQDAIRATFEKLVNAHYVERCYETVG-ISQDDDKNSSTGKRGAKSAKFVEI-ETAEQQAM 179
            VQDA+R +F KLV AH+VERC  +   ++   ++ +   KRGAKSAK VE  +T EQ+A+
Sbjct: 146  VQDALRESFLKLVRAHFVERCPASEPFLAPPSEEETPARKRGAKSAKLVEEPQTIEQRAI 205

Query: 180  SAGVPSD--RFLYVPNTGIDATSEANTSGKSFDVTVGEKHKVEALEMDERKKAMLCEKEV 353
            +A  P D  RF  + NTG D     N       VT GEK K +ALE+D+   A  CEK+V
Sbjct: 206  AAAAPMDAKRFSVIINTGTDVDDSPN-------VTAGEKRKQDALELDKETGAS-CEKDV 257

Query: 354  LWRANFEKFVFHLRQKACVATVRSQLDDGAAVTLNAMIDSIKTGGEKV------PLS--S 509
            LWRANFE+FV  LR KAC+A V+++LDDGAA+ L+AM+++ ++  +KV      PLS  +
Sbjct: 258  LWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSAMLEATRSEEKKVKTENSVPLSMDT 317

Query: 510  IYENVIKNGEGRNMTEAHVRAALDQIGCHCSRIGTEESYSLDLKNIVEIAQNDEVESLVS 689
            I+E V+K+  GR+MT   VR +L Q+GC     G  ESYS+DLKNI+E+AQNDEVES+  
Sbjct: 318  IFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRGAAESYSVDLKNIIELAQNDEVESITL 377

Query: 690  KRYGRAAYSLFRLLSKTGKLMGTDKIADTLIMENMEALKILYSLWKDDYVHMEKLVSHGS 869
            KRYGR AY +FRLLSK+ +L+ TDKI+DT  +E  +  KILY LWKD+Y+ MEKL  HGS
Sbjct: 378  KRYGRDAYRIFRLLSKSCRLLETDKISDTTFVEKKDTAKILYQLWKDEYLQMEKLNLHGS 437

Query: 870  AQSQYLLWRVNKRTVREHVFDETCHAALNLRLKLAYELEQEREIIQLPKDKRIGAQGKRF 1049
             QSQ+LLW+V K T+  HV +E  H+ALNL L++AYELEQE+EIIQLP++KR+GA G RF
Sbjct: 438  RQSQFLLWKVTKDTLWGHVLNEMYHSALNLSLRVAYELEQEQEIIQLPREKRVGALGNRF 497

Query: 1050 ERSRQVNILLESSLMKLDEALMLFHDF 1130
            ER R+V ILLESSLMKLD+A+MLF+DF
Sbjct: 498  ERLRKVRILLESSLMKLDDAIMLFNDF 524


>ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Vitis
            vinifera]
          Length = 511

 Score =  375 bits (962), Expect = e-101
 Identities = 208/387 (53%), Positives = 274/387 (70%), Gaps = 12/387 (3%)
 Frame = +3

Query: 6    VQDAIRATFEKLVNAHYVERCYETVG-ISQDDDKNSSTGKRGAKSAKFVEI-ETAEQQAM 179
            VQDA+R +F KLV AH+VERC  +   ++   ++ +   KRGAKSAK VE  +T EQ+A+
Sbjct: 139  VQDALRESFLKLVRAHFVERCPASEPFLAPPSEEETPARKRGAKSAKLVEEPQTIEQRAI 198

Query: 180  SAGVPSD--RFLYVPNTGIDATSEANTSGKSFDVTVGEKHKVEALEMDERKKAMLCEKEV 353
            +A  P D  RF  + NTG D     N              K +ALE+D+   A  CEK+V
Sbjct: 199  AAAAPMDAKRFSVIINTGTDVDDSPN-------------RKQDALELDKETGAS-CEKDV 244

Query: 354  LWRANFEKFVFHLRQKACVATVRSQLDDGAAVTLNAMIDSIKTGGEKV------PLS--S 509
            LWRANFE+FV  LR KAC+A V+++LDDGAA+ L+AM+++ ++  +KV      PLS  +
Sbjct: 245  LWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSAMLEATRSEEKKVKTENSVPLSMDT 304

Query: 510  IYENVIKNGEGRNMTEAHVRAALDQIGCHCSRIGTEESYSLDLKNIVEIAQNDEVESLVS 689
            I+E V+K+  GR+MT   VR +L Q+GC     G  ESYS+DLKNI+E+AQNDEVES+  
Sbjct: 305  IFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRGAAESYSVDLKNIIELAQNDEVESITL 364

Query: 690  KRYGRAAYSLFRLLSKTGKLMGTDKIADTLIMENMEALKILYSLWKDDYVHMEKLVSHGS 869
            KRYGR AY +FRLLSK+ +L+ TDKI+DT  +E  +  KILY LWKD+Y+ MEKL  HGS
Sbjct: 365  KRYGRDAYRIFRLLSKSCRLLETDKISDTTFVEKKDTAKILYQLWKDEYLQMEKLNLHGS 424

Query: 870  AQSQYLLWRVNKRTVREHVFDETCHAALNLRLKLAYELEQEREIIQLPKDKRIGAQGKRF 1049
             QSQ+LLW+V K T+  HV +E  H+ALNL L++AYELEQE+EIIQLP++KR+GA G RF
Sbjct: 425  RQSQFLLWKVTKDTLWGHVLNEMYHSALNLSLRVAYELEQEQEIIQLPREKRVGALGNRF 484

Query: 1050 ERSRQVNILLESSLMKLDEALMLFHDF 1130
            ER R+V ILLESSLMKLD+A+MLF+DF
Sbjct: 485  ERLRKVRILLESSLMKLDDAIMLFNDF 511


>emb|CBI26210.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  300 bits (767), Expect = 7e-79
 Identities = 174/387 (44%), Positives = 249/387 (64%), Gaps = 12/387 (3%)
 Frame = +3

Query: 6    VQDAIRATFEKLVNAHYVERC-YETVGISQDDDKNSSTGKRGAKSAKFVE-IETAEQQAM 179
            VQDA+R +F KLVNAHYVERC      +   D++ +   K  A SAK VE +E  EQ  +
Sbjct: 146  VQDALRGSFTKLVNAHYVERCPAPDPFLVPPDEEKTPARKHDANSAKAVEELEIGEQCDI 205

Query: 180  SAGVPSDR--FLYVPNTGIDATSEANTSGKSFDVTVGEKHKVEALEMDERKKAMLCEKEV 353
            +   PS    F  + +T  D   + +  G    V +G+K K +AL++D    A   EK+V
Sbjct: 206  AKATPSKAKGFPVITDTCGDINGDKSI-GNPPGVVIGKKRKQDALKLDTESGAA-SEKDV 263

Query: 354  LWRANFEKFVFHLRQKACVATVRSQLDDGAAVTLNAMIDSIKTGGEKVP--------LSS 509
             WRAN+++ V HLR KAC+  VR++LD GAA+ L+AM+++ ++  + V         +S+
Sbjct: 264  PWRANYKELVCHLRHKACIENVRARLDSGAAIVLSAMLEATQSAEKNVKEEISVLLSIST 323

Query: 510  IYENVIKNGEGRNMTEAHVRAALDQIGCHCSRIGTEESYSLDLKNIVEIAQNDEVESLVS 689
            I E V+++  G +MT   +RA+L Q+GCH + +G + +Y++DLK I+E+AQNDEVES+V 
Sbjct: 324  ITEAVMQSEAGCSMTLERIRASLVQLGCHPNGVGADRTYNIDLKKIIELAQNDEVESMVL 383

Query: 690  KRYGRAAYSLFRLLSKTGKLMGTDKIADTLIMENMEALKILYSLWKDDYVHMEKLVSHGS 869
            KRYGR A+ +FRLLSK+   + T KI+DT  +E  EA KILY LWKD+ +HMEK+V + S
Sbjct: 384  KRYGREAHRIFRLLSKSCCPLETTKISDTTFIEKKEAAKILYKLWKDECLHMEKIVLNES 443

Query: 870  AQSQYLLWRVNKRTVREHVFDETCHAALNLRLKLAYELEQEREIIQLPKDKRIGAQGKRF 1049
             QSQ++LW+V K T   H+ DE  HAALNL +          +II+L +DK +GA     
Sbjct: 444  RQSQFMLWKVKKDTFWRHILDEMYHAALNLSI----------QIIELRRDKHVGALR--- 490

Query: 1050 ERSRQVNILLESSLMKLDEALMLFHDF 1130
            ER  ++ ILL++SLMKLD+ALMLFHDF
Sbjct: 491  ERDVRLAILLQASLMKLDDALMLFHDF 517


>ref|XP_003555382.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Glycine
            max]
          Length = 518

 Score =  283 bits (724), Expect = 6e-74
 Identities = 172/385 (44%), Positives = 242/385 (62%), Gaps = 14/385 (3%)
 Frame = +3

Query: 18   IRATFEKLVNAHYVERCYETVGISQDDDKNSSTGKRGAKSAKFVEI-ETAEQQAMSAGVP 194
            +R T  KL+ A +VERC     +     K ++T KRGAKSAK  E  ET EQ+ + A VP
Sbjct: 150  VRETLCKLLTARFVERCPAPEPVVSTSFKETTTKKRGAKSAKIFEAPETLEQRVVDAAVP 209

Query: 195  SD--RFLYVPNTGIDATSEANTSGKSFDVTVGEKHKVEALEMDERKKAMLCEKEVLWRAN 368
             D  RF    N G +   E N+     DV +       ++E D  K     E+++LWRAN
Sbjct: 210  GDVIRFSLTANMGSNVDRETNSD----DVPM------ISVEEDVAK-----EEQILWRAN 254

Query: 369  FEKFVFHLRQKACVATVRSQLDDGAAVTLNAMIDSIKTGGEKV------PLS--SIYENV 524
            FE+F+ HLR K  +  VR+Q DDG A  L+A++++  +  +KV      PLS  +I   V
Sbjct: 255  FEEFIRHLRHKVLIENVRTQHDDGTATVLSAVLEATGSVEKKVKMDNSVPLSLDTIITEV 314

Query: 525  IKNGEGRNMTEAHVRAALDQIGCHCSRIGTEESYSLDLKNIVEIAQNDEVESLVSKRYGR 704
            +K   GR MT   +RA+L Q+GC  S I  EESY +DLK I+E A+N+EVES+V KRYGR
Sbjct: 315  MKTDTGRTMTIDRIRASLVQLGCSPSMI-LEESYCIDLKKIIEPARNEEVESIVLKRYGR 373

Query: 705  AAYSLFRLLSKTGKLMGTDKIADTLIMENMEALKILYSLWKDDYVHMEKL-VSHGSAQSQ 881
             AY +FRLL+K      TD+IA + ++E  EA K+LY LWKD+Y++MEK+  + G+ Q  
Sbjct: 374  DAYRMFRLLAKDCCFHDTDQIAASTLVEKKEASKLLYKLWKDNYLYMEKVGATAGAKQIT 433

Query: 882  YLLWRVNKRTVREHVFDETCHAALNLRLKLAYELEQEREIIQLPKDK--RIGAQGKRFER 1055
             L+W+VNK  + E+V DE  HAALNL L++A+E E++ E++++PKDK    G   K+++R
Sbjct: 434  ILMWKVNKPLLWEYVLDEMYHAALNLSLRMAFEQEKDEELLKVPKDKLREPGPLQKKYKR 493

Query: 1056 SRQVNILLESSLMKLDEALMLFHDF 1130
               V +L+ SSL+KLD+ALMLFHDF
Sbjct: 494  LLNVRLLMGSSLLKLDDALMLFHDF 518


>ref|XP_003535613.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Glycine
            max]
          Length = 510

 Score =  281 bits (719), Expect = 2e-73
 Identities = 168/385 (43%), Positives = 240/385 (62%), Gaps = 14/385 (3%)
 Frame = +3

Query: 18   IRATFEKLVNAHYVERCYETVGISQDDDKNSSTGKRGAKSAKFVEI-ETAEQQAMSAGVP 194
            +R T  KL+ A +VERC     +     K ++T KRGAKSAK  E  ET EQ+ + A VP
Sbjct: 142  VRETLCKLLTARFVERCPAPEPVVSTSFKETTTRKRGAKSAKIFEAPETLEQRVVDAAVP 201

Query: 195  SD--RFLYVPNTGIDATSEANTSGKSFDVTVGEKHKVEALEMDERKKAMLCEKEVLWRAN 368
             D  RF    +T      E N+               +  +M   ++ +  E ++LWRAN
Sbjct: 202  GDVIRFSLAADTRCSVDRETNS---------------DDAQMISVEEEVAKEGQILWRAN 246

Query: 369  FEKFVFHLRQKACVATVRSQLDDGAAVTLNAMIDSIKTGGEKV------PLS--SIYENV 524
            FE+F+ HLR K  +  VR+Q DDG A  L+A++++ ++  +KV      PLS  +I   V
Sbjct: 247  FEEFIRHLRHKVLIENVRTQHDDGTATVLSAVLEATRSVQKKVKTENSVPLSLDTIITEV 306

Query: 525  IKNGEGRNMTEAHVRAALDQIGCHCSRIGTEESYSLDLKNIVEIAQNDEVESLVSKRYGR 704
            +K   GR MT   +RA+L Q+GC  S I  EESYS+DLK I+E A+N+EVES+V KRYG 
Sbjct: 307  MKTDTGRTMTVDRIRASLVQLGCSPSMI-LEESYSIDLKKIIEPARNEEVESIVLKRYGT 365

Query: 705  AAYSLFRLLSKTGKLMGTDKIADTLIMENMEALKILYSLWKDDYVHMEKL-VSHGSAQSQ 881
              Y +FRLL+K      TD+IA + ++E  EA K+LY LWKD+Y++MEK+  + G+ Q+ 
Sbjct: 366  DGYRIFRLLAKDCCFHDTDQIAASTLVEKKEASKLLYKLWKDNYLYMEKVGATVGAKQTT 425

Query: 882  YLLWRVNKRTVREHVFDETCHAALNLRLKLAYELEQEREIIQLPKDKR--IGAQGKRFER 1055
             L+W+VNK  + E+V DE  HAALNL L++A+E E++ E++++PKDKR   G   K++++
Sbjct: 426  ILMWKVNKPLLWEYVLDEMYHAALNLSLRMAFEQEKDEELLKVPKDKRQGPGPLQKKYKK 485

Query: 1056 SRQVNILLESSLMKLDEALMLFHDF 1130
               V +LL SSLMKLD+ALMLFHDF
Sbjct: 486  LLNVWLLLGSSLMKLDDALMLFHDF 510