BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00008714
         (239 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containi...   122   3e-26
emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]   122   3e-26
ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containi...   110   9e-23
ref|XP_002530223.1| pentatricopeptide repeat-containing protein,...   109   2e-22
ref|XP_003625044.1| Pentatricopeptide repeat-containing protein ...   108   3e-22

>ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Vitis vinifera]
          Length = 616

 Score =  122 bits (306), Expect = 3e-26
 Identities = 56/79 (70%), Positives = 67/79 (84%)
 Frame = +2

Query: 2   STFSNLIMGQCVRQNSERAFQIYKSMKKSGCHPNSNTFKMLISTFCKDDDFDGAVQILNE 181
           STFS LI GQCVR+NSERAFQ+YKSM +SGCHPN +TFKMLISTFCK++DFDGAV+++ E
Sbjct: 490 STFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEVVRE 549

Query: 182 MMERCLTPESGLLVELCEG 238
           M ER + P+S  L ELC G
Sbjct: 550 MSERSIAPDSDTLSELCRG 568


>emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]
          Length = 483

 Score =  122 bits (306), Expect = 3e-26
 Identities = 56/79 (70%), Positives = 67/79 (84%)
 Frame = +2

Query: 2   STFSNLIMGQCVRQNSERAFQIYKSMKKSGCHPNSNTFKMLISTFCKDDDFDGAVQILNE 181
           STFS LI GQCVR+NSERAFQ+YKSM +SGCHPN +TFKMLISTFCK++DFDGAV+++ E
Sbjct: 357 STFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEVVRE 416

Query: 182 MMERCLTPESGLLVELCEG 238
           M ER + P+S  L ELC G
Sbjct: 417 MSERSIAPDSDTLSELCRG 435


>ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 1 [Glycine max]
           gi|356526065|ref|XP_003531640.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 2 [Glycine max]
          Length = 522

 Score =  110 bits (276), Expect = 9e-23
 Identities = 50/79 (63%), Positives = 63/79 (79%)
 Frame = +2

Query: 2   STFSNLIMGQCVRQNSERAFQIYKSMKKSGCHPNSNTFKMLISTFCKDDDFDGAVQILNE 181
           STFS LI GQCVR NSERAF IY+SM +SGC PN  TF+MLIS FCK++DFDGAVQ+L +
Sbjct: 401 STFSALITGQCVRNNSERAFLIYRSMVRSGCSPNGQTFQMLISAFCKNEDFDGAVQVLRD 460

Query: 182 MMERCLTPESGLLVELCEG 238
           M+ R ++P+   + ELC+G
Sbjct: 461 MLGRLMSPDLSTMSELCDG 479


>ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530270|gb|EEF32170.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 517

 Score =  109 bits (273), Expect = 2e-22
 Identities = 49/79 (62%), Positives = 60/79 (75%)
 Frame = +2

Query: 2   STFSNLIMGQCVRQNSERAFQIYKSMKKSGCHPNSNTFKMLISTFCKDDDFDGAVQILNE 181
           STFS LI GQC+R NS+RAFQ+YKSM + GCHPN  TF ML+S FCK++DF+GA  +L E
Sbjct: 392 STFSALISGQCIRNNSDRAFQLYKSMVRIGCHPNEQTFNMLVSAFCKNEDFEGAFLVLME 451

Query: 182 MMERCLTPESGLLVELCEG 238
           M ERC TP S +L E+  G
Sbjct: 452 MFERCFTPGSDVLSEIYHG 470


>ref|XP_003625044.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355500059|gb|AES81262.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 521

 Score =  108 bits (271), Expect = 3e-22
 Identities = 50/79 (63%), Positives = 63/79 (79%)
 Frame = +2

Query: 2   STFSNLIMGQCVRQNSERAFQIYKSMKKSGCHPNSNTFKMLISTFCKDDDFDGAVQILNE 181
           STFS LI GQCVR NSERAF +Y+SM +SG  PN NTF+ML S FCK++DFDGAVQ+L +
Sbjct: 397 STFSALIAGQCVRNNSERAFLVYRSMVRSGFSPNENTFRMLASAFCKNEDFDGAVQVLRD 456

Query: 182 MMERCLTPESGLLVELCEG 238
           M+ER +TP+S +L E+  G
Sbjct: 457 MLERFMTPDSSILSEVYSG 475