BLASTX nr result

ID: Coptis21_contig00008654 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00008654
         (1453 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002301183.1| predicted protein [Populus trichocarpa] gi|2...   120   1e-24
emb|CBI19516.3| unnamed protein product [Vitis vinifera]              115   2e-23
emb|CAN75496.1| hypothetical protein VITISV_040890 [Vitis vinifera]   109   2e-21
ref|XP_002327142.1| predicted protein [Populus trichocarpa] gi|2...   106   2e-20
ref|XP_002282794.2| PREDICTED: uncharacterized protein LOC100267...    95   5e-17

>ref|XP_002301183.1| predicted protein [Populus trichocarpa] gi|222842909|gb|EEE80456.1|
           predicted protein [Populus trichocarpa]
          Length = 256

 Score =  120 bits (300), Expect = 1e-24
 Identities = 90/233 (38%), Positives = 126/233 (54%), Gaps = 9/233 (3%)
 Frame = +3

Query: 183 KSSGMSGLCDQEEVSSSANRIEESLSTAWTDEKHSLYLDSMEASFVKQLYNHEYNAIDLL 362
           ++SG++G  +  E++   + + ES+S+ WTDEKH LYL SMEASFV QL    YN+IDLL
Sbjct: 17  ETSGLTGH-ESVELAQQDSPMIESMSSEWTDEKHKLYLKSMEASFVNQL----YNSIDLL 71

Query: 363 GWRSRR-KNQPXXXXXXXXXXXXXXGQFKVLQIRSWKKINFGGAQHGLEFAKESHLNQEN 539
           GWRS++ +  P              GQFKVL+   W+KINF   +  L  AK+S     +
Sbjct: 72  GWRSQKGRPVPNLSGEVNCSTCRPSGQFKVLRRGGWQKINFRRHESQLSSAKDSRGYLTS 131

Query: 540 PRL-HLRSVKQLQEATMVNLSKSGAPCRKLSNAGRHSRL--PSESPAFP----SESC-QN 695
           P +      ++ + AT   L +     R ++   + + L  P+ +        S SC ++
Sbjct: 132 PWIQQFTPARKPEGATSPALQECAIQSRGINLKWKKAVLCCPATNSKLSHFGNSFSCHRD 191

Query: 696 FVFSYKEMSGQNFVDEAKEPEHSRRLCKTKRLKTLSEIASRKDQVVPVVISPV 854
           FV S  EMSGQNFVDE  E E +     +KRLKTL    S  DQVVP   +PV
Sbjct: 192 FVESNTEMSGQNFVDEDIESESASSSFSSKRLKTLKTDPSSSDQVVPHSKTPV 244


>emb|CBI19516.3| unnamed protein product [Vitis vinifera]
          Length = 255

 Score =  115 bits (289), Expect = 2e-23
 Identities = 84/235 (35%), Positives = 123/235 (52%), Gaps = 16/235 (6%)
 Frame = +3

Query: 180 KKSSGMSG-----LCDQEEVSSSANRIEESLSTAWTDEKHSLYLDSMEASFVKQLYNHEY 344
           +++SG++G       DQEE SS  + + E +S  WTDEKHSLYL SMEASFV QL    Y
Sbjct: 7   RQTSGLTGGDSTESVDQEETSSLDSPVTEPMSMEWTDEKHSLYLKSMEASFVDQL----Y 62

Query: 345 NAIDLLGWRSRRKN--QPXXXXXXXXXXXXXXGQFKVLQIRSWKKINFGGAQHGLEFAKE 518
           N++ LLGW S+++N                  GQFKVL+   W+KINF  A+  +  A  
Sbjct: 63  NSLGLLGWHSQKENPSDSKPSLQMLCKTRNSSGQFKVLRGGFWQKINFERARKQMVKADG 122

Query: 519 SHLNQENPRL-HLRSVKQLQEATMVNLSKSGAPCRK-LSNAGRHSR---LPSESPAFPSE 683
           SH+   NP + H RS  + +   +    ++G+  RK + + G+ +    L + S  FP  
Sbjct: 123 SHVLLANPWIQHFRSACRDETVVLPAPQENGSSTRKAVPSRGKKASPCGLATTSKQFPMY 182

Query: 684 SC----QNFVFSYKEMSGQNFVDEAKEPEHSRRLCKTKRLKTLSEIASRKDQVVP 836
            C    ++ + +  E+S QNF+D+  E      L   KR+KT+       DQVVP
Sbjct: 183 HCHLRQRDSLSTNTEVSDQNFLDDDVEGGRENSLVSAKRMKTIVVDTCVNDQVVP 237


>emb|CAN75496.1| hypothetical protein VITISV_040890 [Vitis vinifera]
          Length = 467

 Score =  109 bits (272), Expect = 2e-21
 Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 16/223 (7%)
 Frame = +3

Query: 180 KKSSGMSG-----LCDQEEVSSSANRIEESLSTAWTDEKHSLYLDSMEASFVKQLYNHEY 344
           +++SG++G       DQEE SS  + + E +S  WTDEKHSLYL SMEASFV QL    Y
Sbjct: 7   RQTSGLTGGDSTXXVDQEETSSLDSPVTEPMSMEWTDEKHSLYLKSMEASFVDQL----Y 62

Query: 345 NAIDLLGWRSRRKN--QPXXXXXXXXXXXXXXGQFKVLQIRSWKKINFGGAQHGLEFAKE 518
           N+  LLGW S+++N                  GQFKVL+   W+KINF  A+  +  A  
Sbjct: 63  NSXGLLGWHSQKENPSDSKPSLQMLCKTRNSSGQFKVLRGGFWQKINFERARKQMVKADG 122

Query: 519 SHLNQENPRL-HLRSVKQLQEATMVNLSKSGAPCRK-LSNAGRHSR---LPSESPAFPSE 683
           SH+   NP + H RS  + +   +    ++G+  RK + + G+ +    L + S  FP  
Sbjct: 123 SHVLLANPWIQHFRSACRDETVVLPAPQENGSSTRKAVPSRGKKASPCGLATTSKQFPMY 182

Query: 684 SC----QNFVFSYKEMSGQNFVDEAKEPEHSRRLCKTKRLKTL 800
            C    ++ + +  E+S QNF+D+  E      L   KR+KT+
Sbjct: 183 HCHLRQRDSLSTNTEVSDQNFLDDDVEGGRENSLVSAKRMKTI 225


>ref|XP_002327142.1| predicted protein [Populus trichocarpa] gi|222835457|gb|EEE73892.1|
           predicted protein [Populus trichocarpa]
          Length = 254

 Score =  106 bits (264), Expect = 2e-20
 Identities = 82/238 (34%), Positives = 119/238 (50%), Gaps = 13/238 (5%)
 Frame = +3

Query: 180 KKSSGMSGLCDQE--EVSSSANRIEESLSTAWTDEKHSLYLDSMEASFVKQLYNHEYNAI 353
           + SS  S L   E  E++   + +  S+++ WTDEKH+LYL SMEASFV QL    +N++
Sbjct: 10  RTSSETSELTGYESGELAQQDSPVIASMASEWTDEKHNLYLKSMEASFVNQL----HNSM 65

Query: 354 DLLGWRSRRKNQ-PXXXXXXXXXXXXXXGQFKVLQIRSWKKINFGGAQHGLEFAKESHLN 530
           DLLGWRS ++   P              G+FKV +  +W+KINF   +  +  AKES   
Sbjct: 66  DLLGWRSLKEGSVPNLSREVNCRTCTPSGEFKVHRRGNWQKINFRRPESQISSAKESRGF 125

Query: 531 QENPRL-HLRSVKQLQEATMVNLSKSGAPCRKLSNAGRHSRLPSESPAFPSESC------ 689
             +P + H  S ++ ++     L +     R   + G+ + L    PA  S+        
Sbjct: 126 LTSPWIQHFTSARKPEDVASPTLQECANQSRATISNGKKAMLC--CPAISSKHYHLSNSF 183

Query: 690 ---QNFVFSYKEMSGQNFVDEAKEPEHSRRLCKTKRLKTLSEIASRKDQVVPVVISPV 854
               + V S  EMS QNFVDE  + E +     +K++KTL   AS  DQVVP    PV
Sbjct: 184 SYHHDLVDSNTEMSDQNFVDEDIKGEKASSSLSSKKMKTLKTDASGSDQVVPHGKPPV 241


>ref|XP_002282794.2| PREDICTED: uncharacterized protein LOC100267847 [Vitis vinifera]
          Length = 201

 Score = 94.7 bits (234), Expect = 5e-17
 Identities = 67/182 (36%), Positives = 97/182 (53%), Gaps = 12/182 (6%)
 Frame = +3

Query: 180 KKSSGMSG-----LCDQEEVSSSANRIEESLSTAWTDEKHSLYLDSMEASFVKQLYNHEY 344
           +++SG++G       DQEE SS  + + E +S  WTDEKHSLYL SMEASFV QL    Y
Sbjct: 7   RQTSGLTGGDSTESVDQEETSSLDSPVTEPMSMEWTDEKHSLYLKSMEASFVDQL----Y 62

Query: 345 NAIDLLGWRSRRKN--QPXXXXXXXXXXXXXXGQFKVLQIRSWKKINFGGAQHGLEFAKE 518
           N++ LLGW S+++N                  GQFKVL+   W+KINF  A+  +  A  
Sbjct: 63  NSLGLLGWHSQKENPSDSKPSLQMLCKTRNSSGQFKVLRGGFWQKINFERARKQMVKADG 122

Query: 519 SHLNQENPRL-HLRSVKQLQEATMVNLSKSGAPCRK-LSNAGRHSR---LPSESPAFPSE 683
           SH+   NP + H RS  + +   +    ++G+  RK + + G+ +    L + S  FP  
Sbjct: 123 SHVLLANPWIQHFRSACRDETVVLPAPQENGSSTRKAVPSRGKKASPCGLATTSKQFPMY 182

Query: 684 SC 689
            C
Sbjct: 183 HC 184


Top