BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00008557
         (1319 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI39565.3| unnamed protein product [Vitis vinifera]              330   4e-88
ref|XP_002282861.1| PREDICTED: DNA polymerase III polC-type-like...   330   4e-88
emb|CAN74413.1| hypothetical protein VITISV_042394 [Vitis vinifera]   299   9e-79
ref|XP_003554625.1| PREDICTED: DNA polymerase III polC-type-like...   288   2e-75
ref|XP_003626171.1| DNA polymerase III polC-type [Medicago trunc...   288   2e-75

>emb|CBI39565.3| unnamed protein product [Vitis vinifera]
          Length = 332

 Score =  330 bits (847), Expect = 4e-88
 Identities = 183/354 (51%), Positives = 238/354 (67%), Gaps = 13/354 (3%)
 Frame = +3

Query: 195  MCFSVLQNTRCRMRSMKVNPILQPISYASIWFDDFCSIGNTLGRNFSLKPVGYYTNRHFR 374
            MCFS+LQ  RCR+ ++           AS W + F S+G+T   + S K +G +TN    
Sbjct: 1    MCFSILQVPRCRIHTL-----------ASFWRESFHSLGSTCRSSSSFKLLGSHTN---- 45

Query: 375  EGHETGSCINETKKLSGRLKQQLTTKVHIRKYNIESSQPGTVRPDELLDGA--------- 527
             G E G+    T++        +TTK   R    +SS+   +R  E++DG          
Sbjct: 46   -GLEGGNSRRWTRR-------PITTKSEGRNKYTQSSKRSNIR-HEIVDGTVSTSTKLIV 96

Query: 528  ---KVSKFEGFKYCDVHQK-TECGDIQRNVTIIVFDIETTGLGRENERIIEIALRDLSGG 695
               ++S+ +  +YC+V +K TE  D+ + VT+IVFD ETTGL R N+RIIEI L+DL GG
Sbjct: 97   DKLEISESQRIQYCEVQEKVTENKDLAKLVTVIVFDTETTGLSRANDRIIEIGLQDLGGG 156

Query: 696  ENSTFQTLVNPERKVPNAHVHGIESSMVNRPDVPRFKDLIPILRHYVESRQIPGAPILWV 875
            ENSTFQTLVNPER VPN HVHGI + MVNRPDVPR+KDLIPIL  YVESRQ PG  ILWV
Sbjct: 157  ENSTFQTLVNPERIVPNPHVHGITTYMVNRPDVPRWKDLIPILLQYVESRQKPGGLILWV 216

Query: 876  SHNARSFDVPFLINEFSRCSEEIPSDWLFLDTLPLARELAKLEGTENLSGKSVQALRDYY 1055
            +HN RSFDVPFLINEFSRC+ E+P +W FLDTLPLAREL K  G++   G S+QALR+YY
Sbjct: 217  AHNGRSFDVPFLINEFSRCNTEVPPNWRFLDTLPLARELIKSAGSDLPPGASLQALREYY 276

Query: 1056 GIPLSGTAHRAMSDANSLSAILQKMTIDLKLTVSSLLERAFKASDVVLKNKKKS 1217
             IPL G AHR +SD  +LS +LQ +T +LK++V++LL+R+F ASD++   KKK+
Sbjct: 277  RIPLVGPAHRVLSDVYTLSQVLQMLTFNLKVSVANLLDRSFTASDIINPKKKKN 330


>ref|XP_002282861.1| PREDICTED: DNA polymerase III polC-type-like isoform 2 [Vitis
            vinifera] gi|225450651|ref|XP_002282855.1| PREDICTED: DNA
            polymerase III polC-type-like isoform 1 [Vitis vinifera]
          Length = 337

 Score =  330 bits (847), Expect = 4e-88
 Identities = 183/354 (51%), Positives = 238/354 (67%), Gaps = 13/354 (3%)
 Frame = +3

Query: 195  MCFSVLQNTRCRMRSMKVNPILQPISYASIWFDDFCSIGNTLGRNFSLKPVGYYTNRHFR 374
            MCFS+LQ  RCR+ ++           AS W + F S+G+T   + S K +G +TN    
Sbjct: 6    MCFSILQVPRCRIHTL-----------ASFWRESFHSLGSTCRSSSSFKLLGSHTN---- 50

Query: 375  EGHETGSCINETKKLSGRLKQQLTTKVHIRKYNIESSQPGTVRPDELLDGA--------- 527
             G E G+    T++        +TTK   R    +SS+   +R  E++DG          
Sbjct: 51   -GLEGGNSRRWTRR-------PITTKSEGRNKYTQSSKRSNIR-HEIVDGTVSTSTKLIV 101

Query: 528  ---KVSKFEGFKYCDVHQK-TECGDIQRNVTIIVFDIETTGLGRENERIIEIALRDLSGG 695
               ++S+ +  +YC+V +K TE  D+ + VT+IVFD ETTGL R N+RIIEI L+DL GG
Sbjct: 102  DKLEISESQRIQYCEVQEKVTENKDLAKLVTVIVFDTETTGLSRANDRIIEIGLQDLGGG 161

Query: 696  ENSTFQTLVNPERKVPNAHVHGIESSMVNRPDVPRFKDLIPILRHYVESRQIPGAPILWV 875
            ENSTFQTLVNPER VPN HVHGI + MVNRPDVPR+KDLIPIL  YVESRQ PG  ILWV
Sbjct: 162  ENSTFQTLVNPERIVPNPHVHGITTYMVNRPDVPRWKDLIPILLQYVESRQKPGGLILWV 221

Query: 876  SHNARSFDVPFLINEFSRCSEEIPSDWLFLDTLPLARELAKLEGTENLSGKSVQALRDYY 1055
            +HN RSFDVPFLINEFSRC+ E+P +W FLDTLPLAREL K  G++   G S+QALR+YY
Sbjct: 222  AHNGRSFDVPFLINEFSRCNTEVPPNWRFLDTLPLARELIKSAGSDLPPGASLQALREYY 281

Query: 1056 GIPLSGTAHRAMSDANSLSAILQKMTIDLKLTVSSLLERAFKASDVVLKNKKKS 1217
             IPL G AHR +SD  +LS +LQ +T +LK++V++LL+R+F ASD++   KKK+
Sbjct: 282  RIPLVGPAHRVLSDVYTLSQVLQMLTFNLKVSVANLLDRSFTASDIINPKKKKN 335


>emb|CAN74413.1| hypothetical protein VITISV_042394 [Vitis vinifera]
          Length = 340

 Score =  299 bits (766), Expect = 9e-79
 Identities = 148/236 (62%), Positives = 187/236 (79%), Gaps = 1/236 (0%)
 Frame = +3

Query: 513  LLDGAKVSKFEGFKYCDVHQK-TECGDIQRNVTIIVFDIETTGLGRENERIIEIALRDLS 689
            ++D  ++S+ +  +YC+V +K TE  D+ + VT+IVFD ETTGL R N+RIIEI L+DL 
Sbjct: 103  IVDKLEISESQRIQYCEVQEKVTENKDLAKLVTVIVFDTETTGLSRANDRIIEIGLQDLG 162

Query: 690  GGENSTFQTLVNPERKVPNAHVHGIESSMVNRPDVPRFKDLIPILRHYVESRQIPGAPIL 869
            GGENSTFQTLVNPER VPN HVHGI + MVNRPDVPR+KDLIPIL  YVESRQ PG  IL
Sbjct: 163  GGENSTFQTLVNPERIVPNPHVHGITTYMVNRPDVPRWKDLIPILLQYVESRQKPGGLIL 222

Query: 870  WVSHNARSFDVPFLINEFSRCSEEIPSDWLFLDTLPLARELAKLEGTENLSGKSVQALRD 1049
            WV+HN RSFDVPFLINEFSRC+ E+P +W F+DTLPLARE  K  G++  SG S+QALR+
Sbjct: 223  WVAHNGRSFDVPFLINEFSRCNTEVPPNWRFMDTLPLAREFIKSAGSDLPSGASLQALRE 282

Query: 1050 YYGIPLSGTAHRAMSDANSLSAILQKMTIDLKLTVSSLLERAFKASDVVLKNKKKS 1217
            Y+ IPL G AHR +SD  +LS ILQ +T +LK++V++LL+R+F ASD++   KKK+
Sbjct: 283  YFRIPLVGPAHRVLSDVYTLSQILQMLTFNLKVSVANLLDRSFTASDIINPKKKKN 338


>ref|XP_003554625.1| PREDICTED: DNA polymerase III polC-type-like [Glycine max]
          Length = 329

 Score =  288 bits (738), Expect = 2e-75
 Identities = 167/344 (48%), Positives = 226/344 (65%), Gaps = 3/344 (0%)
 Frame = +3

Query: 195  MCFSVLQNTRCRMRSMKVNPILQPISYASIWFDDFCSIGNTLGRNFSLKPVGYYTNRHFR 374
            M FS+L   R R++S+           A+ W + F S   T G N +++ +G   +R + 
Sbjct: 6    MIFSLLHVPRFRIQSL-----------ANCWGETFHSFSTTCGNNSNVRLLG---SRIY- 50

Query: 375  EGHETGSCINETKKLSGRLKQQLTTKVHIRKYNIESSQPGTVRPDELLDGAK--VSKFEG 548
             G + G     T+ ++  ++ + +TK    K+ I S    T+  +  ++  K  + K + 
Sbjct: 51   -GLQGGQRKKWTRPITTNIEGKGSTKSKSIKHEILSE---TILANATVNVNKTQLDKSQE 106

Query: 549  FKYCDVHQKTECGDIQRNVTIIVFDIETTGLGRENERIIEIALRDLSGGENSTFQTLVNP 728
             +YCD+ Q+        + T+IVFDIETTG  RENERIIEIALRDL GGENSTFQTLVNP
Sbjct: 107  IQYCDIQQEIAENKDLSSYTVIVFDIETTGFSRENERIIEIALRDLQGGENSTFQTLVNP 166

Query: 729  ERKVPNAHVHGIESSMVNRPDVPRFKDLIPILRHYVESRQIPGAPILWVSHNARSFDVPF 908
            + KVPN+H+HGI + MVN+P VPR +DLIPIL  YV SR+ PG  +++V+HNAR FDVPF
Sbjct: 167  QCKVPNSHIHGITTHMVNKPGVPRMEDLIPILLQYVRSREKPGGDVIFVAHNARCFDVPF 226

Query: 909  LINEFSRCSEEIPSDWLFLDTLPLARELAKLEGTENLSGKSVQALRDYYGIPLSGTAHRA 1088
            +INE  R S EIP +WLFLDTLPLAREL K  GT  LS  S+ ALRD YGI + G+AHRA
Sbjct: 227  IINELRRYSVEIPPNWLFLDTLPLARELIKSGGT-TLSSTSLAALRDLYGIKVDGSAHRA 285

Query: 1089 MSDANSLSAILQKMTIDLKLTVSSLLERAFKASDVV-LKNKKKS 1217
            M D N+LS IL ++T DLKLT+S L++++F  SD++  KNKKK+
Sbjct: 286  MVDVNALSLILSRLTSDLKLTLSDLVKKSFTESDIINSKNKKKN 329


>ref|XP_003626171.1| DNA polymerase III polC-type [Medicago truncatula]
            gi|355501186|gb|AES82389.1| DNA polymerase III polC-type
            [Medicago truncatula]
          Length = 332

 Score =  288 bits (737), Expect = 2e-75
 Identities = 164/345 (47%), Positives = 214/345 (62%), Gaps = 4/345 (1%)
 Frame = +3

Query: 195  MCFSVLQNTRCRMRSMKVNPILQPISYASIWFDDFCSIGNTLGRNFSLKPVG---YYTNR 365
            M FS LQ  RCR+ S+  N               F S  N    N S++ +G   Y    
Sbjct: 6    MIFSFLQVPRCRLHSLANN-----------CGQTFHSFSNICENNSSVRLLGSRIYGLQG 54

Query: 366  HFREGHETGSCINETKKLSGRLKQQLTTKVHIRKYNIESSQPGTVRPDELLDGAKVSKFE 545
              R+          T+  +G   +  +TK  I    I +S    V+  +L       +F 
Sbjct: 55   GHRKKWTRRPITTNTEGSAGTKSR--STKQEILSETISTSSTVNVKKTQL------GQFP 106

Query: 546  GFKYCDVHQK-TECGDIQRNVTIIVFDIETTGLGRENERIIEIALRDLSGGENSTFQTLV 722
              +YCD+HQ+  +  D+   VT+IVFDIETTG  RENERIIEIALRDL GG NSTFQT V
Sbjct: 107  EIQYCDIHQEIAQNKDLSSLVTVIVFDIETTGFSRENERIIEIALRDLQGGPNSTFQTFV 166

Query: 723  NPERKVPNAHVHGIESSMVNRPDVPRFKDLIPILRHYVESRQIPGAPILWVSHNARSFDV 902
            NP+R V N+H+HGI + MV+RP VPR +DL+PIL HYV+SR+ P   +LWV HNAR FDV
Sbjct: 167  NPQRSVYNSHIHGITTQMVSRPGVPRMEDLVPILFHYVKSREKPRGYVLWVGHNARVFDV 226

Query: 903  PFLINEFSRCSEEIPSDWLFLDTLPLARELAKLEGTENLSGKSVQALRDYYGIPLSGTAH 1082
            PF+INEF RCS +IP +WLF+DTLPLAR+L K EGT+ L   S+ +LR +Y I + G AH
Sbjct: 227  PFIINEFRRCSTQIPPNWLFVDTLPLARQLMKSEGTK-LPSVSLDSLRKFYEIKVDGPAH 285

Query: 1083 RAMSDANSLSAILQKMTIDLKLTVSSLLERAFKASDVVLKNKKKS 1217
            RAM D N+LS IL K+T DLKLT+S L+E++F  +D++   KKK+
Sbjct: 286  RAMEDVNTLSLILPKLTCDLKLTLSGLVEKSFTEADIINSKKKKN 330