BLASTX nr result

ID: Coptis21_contig00008554 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00008554
         (663 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532540.1| syntaxin, plant, putative [Ricinus communis]...    97   3e-18
dbj|BAG15858.1| harpin-induced protein [Bruguiera gymnorhiza]          96   5e-18
ref|XP_002280591.1| PREDICTED: putative syntaxin-24 [Vitis vinif...    92   7e-17
ref|XP_002879585.1| yellow-leaf-specific gene 9 [Arabidopsis lyr...    92   9e-17
ref|NP_181142.1| late embryogenesis abundant hydroxyproline-rich...    92   1e-16

>ref|XP_002532540.1| syntaxin, plant, putative [Ricinus communis]
           gi|223527729|gb|EEF29834.1| syntaxin, plant, putative
           [Ricinus communis]
          Length = 219

 Score = 97.1 bits (240), Expect = 3e-18
 Identities = 49/111 (44%), Positives = 68/111 (61%), Gaps = 3/111 (2%)
 Frame = -3

Query: 364 LNVAYNGPSVPSQQP---PXXXXXXXXXCVLGTTFTVILSIIVAFGIAALIFWFVVRPTK 194
           LN AY GP++P  Q    P         C+L     +I++I V  G+A LIFW VVRP K
Sbjct: 8   LNGAYYGPAIPPPQSYHRPGRSGCGCGCCLLSCLLKIIITIAVVLGLAVLIFWLVVRPNK 67

Query: 193 MEYTVVSTDFQRFDLVNNNTIHYNLTLYMDVRNPNKRIGIYYDQLDFIASY 41
           +++ V   +   F+ +NNNT+HYNL L + VRNPNK+IGIYYD+++    Y
Sbjct: 68  VKFHVTEANLSEFN-INNNTLHYNLALNITVRNPNKKIGIYYDRIEARGKY 117


>dbj|BAG15858.1| harpin-induced protein [Bruguiera gymnorhiza]
          Length = 200

 Score = 96.3 bits (238), Expect = 5e-18
 Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
 Frame = -3

Query: 364 LNVAYNGPSVPS----QQPPXXXXXXXXXCVLGTTFTVILSIIVAFGIAALIFWFVVRPT 197
           LN AY GP++P      +P          C+L   F +I++ +V  GIA L+ W V+RP 
Sbjct: 8   LNGAYYGPAIPPPKNYHRPGGRSGSGCGCCLLSFLFKLIITAVVIIGIAILVIWLVLRPN 67

Query: 196 KMEYTVVSTDFQRFDLVNNNTIHYNLTLYMDVRNPNKRIGIYYDQLDFIASYTAWNRFAW 17
           K+++ V      +F++  NNT+ YNL L + VRNPNKRIGIYYD++D  A Y   NRF  
Sbjct: 68  KIKFHVTDATLTQFNITANNTLQYNLALNLTVRNPNKRIGIYYDKIDAAAFYEG-NRFGH 126

Query: 16  A 14
           A
Sbjct: 127 A 127


>ref|XP_002280591.1| PREDICTED: putative syntaxin-24 [Vitis vinifera]
           gi|147772262|emb|CAN62999.1| hypothetical protein
           VITISV_034236 [Vitis vinifera]
          Length = 226

 Score = 92.4 bits (228), Expect = 7e-17
 Identities = 46/121 (38%), Positives = 71/121 (58%), Gaps = 5/121 (4%)
 Frame = -3

Query: 388 MSQAHEIPLNVAYNGPSVPSQQPPXXXXXXXXXC-----VLGTTFTVILSIIVAFGIAAL 224
           M+   +  LN  Y GPS+P +            C     +LG    +I+++++  GIA L
Sbjct: 1   MADVEKQTLNKGYYGPSIPPKSRSYHSHGRGSGCGCCCCLLGFLLKLIVTVVIIVGIAVL 60

Query: 223 IFWFVVRPTKMEYTVVSTDFQRFDLVNNNTIHYNLTLYMDVRNPNKRIGIYYDQLDFIAS 44
           +FW +VRP K+++ VV      F+L ++N + YNLT+ M VRNPNKRIGIY+D+++  A 
Sbjct: 61  LFWLIVRPNKVKFHVVDASLTEFNLTSDNILQYNLTVNMTVRNPNKRIGIYFDRIEAKAY 120

Query: 43  Y 41
           Y
Sbjct: 121 Y 121


>ref|XP_002879585.1| yellow-leaf-specific gene 9 [Arabidopsis lyrata subsp. lyrata]
           gi|297325424|gb|EFH55844.1| yellow-leaf-specific gene 9
           [Arabidopsis lyrata subsp. lyrata]
          Length = 227

 Score = 92.0 bits (227), Expect = 9e-17
 Identities = 51/118 (43%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
 Frame = -3

Query: 379 AHEIPLNVAYNGPSVPSQQPPXXXXXXXXXC----VLGTTFTVILSIIVAFGIAALIFWF 212
           A E PLN A+ GPSVP   P               +L     VI+S+IV  G+AALIFW 
Sbjct: 2   AAEQPLNGAFYGPSVPPPAPKGYYRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIFWL 61

Query: 211 VVRPTKMEYTVVSTDFQRFDLVN-NNTIHYNLTLYMDVRNPNKRIGIYYDQLDFIASY 41
           +VRP  +++ V      RFD  + +N + YNL L + VRNPNKRIG+YYD+++  A Y
Sbjct: 62  IVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGVYYDRIEAHAYY 119


>ref|NP_181142.1| late embryogenesis abundant hydroxyproline-rich glycoprotein
           [Arabidopsis thaliana] gi|4510371|gb|AAD21459.1| similar
           to harpin-induced protein hin1 from tobacco [Arabidopsis
           thaliana] gi|13122296|dbj|BAB32889.1| hin1 homolog
           [Arabidopsis thaliana] gi|21554788|gb|AAM63691.1|
           similar to harpin-induced protein hin1 from tobacco
           [Arabidopsis thaliana] gi|27754489|gb|AAO22692.1|
           putative harpin-induced protein hin1 [Arabidopsis
           thaliana] gi|28393973|gb|AAO42394.1| putative
           harpin-induced protein hin1 [Arabidopsis thaliana]
           gi|330254091|gb|AEC09185.1| late embryogenesis abundant
           hydroxyproline-rich glycoprotein [Arabidopsis thaliana]
          Length = 227

 Score = 91.7 bits (226), Expect = 1e-16
 Identities = 51/118 (43%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
 Frame = -3

Query: 379 AHEIPLNVAYNGPSVPSQQPPXXXXXXXXXC----VLGTTFTVILSIIVAFGIAALIFWF 212
           A E PLN A+ GPSVP   P               +L     VI+S+IV  G+AALIFW 
Sbjct: 2   AAEQPLNGAFYGPSVPPPAPKGYYRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIFWL 61

Query: 211 VVRPTKMEYTVVSTDFQRFDLVN-NNTIHYNLTLYMDVRNPNKRIGIYYDQLDFIASY 41
           +VRP  +++ V      RFD  + +N + YNL L + VRNPNKRIG+YYD+++  A Y
Sbjct: 62  IVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYY 119


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