BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00008534
         (1034 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634850.1| PREDICTED: 50S ribosomal protein L4-like [Vi...   429   e-118
ref|XP_002518422.1| 50S ribosomal protein L4, putative [Ricinus ...   423   e-116
ref|XP_004134779.1| PREDICTED: 50S ribosomal protein L4-like [Cu...   422   e-116
emb|CAN77922.1| hypothetical protein VITISV_027648 [Vitis vinifera]   419   e-115
ref|NP_565463.1| large subunit ribosomal protein L4 [Arabidopsis...   418   e-114

>ref|XP_003634850.1| PREDICTED: 50S ribosomal protein L4-like [Vitis vinifera]
           gi|297741766|emb|CBI32995.3| unnamed protein product
           [Vitis vinifera]
          Length = 315

 Score =  429 bits (1102), Expect = e-118
 Identities = 227/322 (70%), Positives = 255/322 (79%), Gaps = 25/322 (7%)
 Frame = +1

Query: 109 MAVSLSRKILLRSFG----------------------SLSGLNNSRGIVHRSFESRTSSS 222
           MAVS+SR+ LLR+FG                      +L GL +  G+       +T SS
Sbjct: 1   MAVSISRR-LLRTFGPSRVFGHCNSPMIMCPLFRTSDALCGLVSQDGLFSTDSSCKTGSS 59

Query: 223 EGGVLSFFARRMFCTST-LTPQSCEGAIPQELLMKQ--LAPDRTQGGYEDLIIPVTNFHY 393
                 F + R   T+T LTP+S   A P ELL  +  L P+RT G Y+DL+IPVTNFH 
Sbjct: 60  ------FLSSRSLSTTTILTPESSGVAFPPELLSTKTVLTPERTPGHYQDLVIPVTNFHN 113

Query: 394 EDKGFMVLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKSISEVSGTGRKPWNQKGTG 573
           EDKGFMVLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTK+ISEVSGTGRKPW QKGTG
Sbjct: 114 EDKGFMVLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWRQKGTG 173

Query: 574 RARHGSLRGPQFRHGAVMHGPKPRSHAFKLQKKVRRLGLKVALSARAAEGKLLIFEDLEV 753
           RARHG+LRGPQFR GA+MHGPKPRSHA KL KKVRRLGLK+ALSAR AEGKLL+F+DLEV
Sbjct: 174 RARHGTLRGPQFRGGAIMHGPKPRSHAIKLNKKVRRLGLKIALSARTAEGKLLVFDDLEV 233

Query: 754 PTHKTKNIVNYVSQLESTKKLLVVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILLHD 933
           P+HKTKNIVNYV ++E+TKKLL+VDGGPI EKLKLATQNLHYVNVLPSIGLNVYSILLHD
Sbjct: 234 PSHKTKNIVNYVKEMENTKKLLLVDGGPITEKLKLATQNLHYVNVLPSIGLNVYSILLHD 293

Query: 934 TLLMTRDAVNRIVERMHTPINR 999
           TL+M+RDAVN+IVERMHTPINR
Sbjct: 294 TLVMSRDAVNKIVERMHTPINR 315


>ref|XP_002518422.1| 50S ribosomal protein L4, putative [Ricinus communis]
           gi|223542267|gb|EEF43809.1| 50S ribosomal protein L4,
           putative [Ricinus communis]
          Length = 294

 Score =  423 bits (1088), Expect = e-116
 Identities = 223/302 (73%), Positives = 250/302 (82%), Gaps = 5/302 (1%)
 Frame = +1

Query: 109 MAVSLSRKILLRSFGSLSGLNNSRGIVHRSFESRTSSS---EGGVLSFFARRMFCTSTLT 279
           MAVS+SR+IL RSF SL  L       H+SF +   SS   + G  S   R++  TS LT
Sbjct: 1   MAVSISRRIL-RSFRSLPSLT------HQSFRASHESSSFIKNGAASLACRKL-STSILT 52

Query: 280 PQSCEGAIPQELLMKQ--LAPDRTQGGYEDLIIPVTNFHYEDKGFMVLAGDVFDVPIRKD 453
           P S + A P +LL  +  L P+R  G +EDL+IPVTNF  EDKGFMVLAGDVFDVPI+K 
Sbjct: 53  PGSSDDAFPSDLLSTKTLLTPEREIGLHEDLVIPVTNFLNEDKGFMVLAGDVFDVPIKKH 112

Query: 454 IVHRVVRWQLAKRQQGTHSTKSISEVSGTGRKPWNQKGTGRARHGSLRGPQFRHGAVMHG 633
           I+HRVVRWQLAKRQQGTHSTK+ISEVSGTG+KP+ QKGTGRARHG+LRGPQFR GA MHG
Sbjct: 113 IIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPYRQKGTGRARHGTLRGPQFRGGATMHG 172

Query: 634 PKPRSHAFKLQKKVRRLGLKVALSARAAEGKLLIFEDLEVPTHKTKNIVNYVSQLESTKK 813
           PKPRSHA K  KKVRRLGLK+AL+ARAAEGKLL+FEDLE+PTHKTKNIVNYV Q+E TKK
Sbjct: 173 PKPRSHAIKCNKKVRRLGLKIALTARAAEGKLLVFEDLEIPTHKTKNIVNYVKQMEETKK 232

Query: 814 LLVVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLLMTRDAVNRIVERMHTPI 993
           LL+VDGGPINEKLKLA QNLHYVNVLPSIGLNVYSILLHDTL+M+RDAVNRIVERMHTPI
Sbjct: 233 LLLVDGGPINEKLKLAAQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVNRIVERMHTPI 292

Query: 994 NR 999
           NR
Sbjct: 293 NR 294


>ref|XP_004134779.1| PREDICTED: 50S ribosomal protein L4-like [Cucumis sativus]
           gi|449531047|ref|XP_004172499.1| PREDICTED: 50S
           ribosomal protein L4-like [Cucumis sativus]
          Length = 315

 Score =  422 bits (1084), Expect = e-116
 Identities = 225/316 (71%), Positives = 255/316 (80%), Gaps = 19/316 (6%)
 Frame = +1

Query: 109 MAVSLSRKILLRSFGSLS--GLNNSRGIVHRSFE------------SRTSSSEGGVL--- 237
           MA+S+SR+ LLRS GSLS  G  NS   + RSF             S T +S   +L   
Sbjct: 1   MAISVSRR-LLRSVGSLSTFGQCNSSCTMSRSFSNPHEIYGHVSGSSSTFASRSTLLKAG 59

Query: 238 SFFARRMFCTSTLTPQSCEGAIPQELLMKQ--LAPDRTQGGYEDLIIPVTNFHYEDKGFM 411
           SF A R FCTS LTP+S   A P ELL  +   + +R  G Y+DL+IPVTNF  EDKGFM
Sbjct: 60  SFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDKGFM 119

Query: 412 VLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKSISEVSGTGRKPWNQKGTGRARHGS 591
           VLAGDVFD+PIRKDI+HRVVRWQLAKRQQGTHSTK+ISEVSGTGRKPW QKGTGRARHG+
Sbjct: 120 VLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRARHGT 179

Query: 592 LRGPQFRHGAVMHGPKPRSHAFKLQKKVRRLGLKVALSARAAEGKLLIFEDLEVPTHKTK 771
           LRGPQFR GA MHGPKPRSHAFKL KKVRRLGL +ALSAR AEGKLL+F++L+V THKTK
Sbjct: 180 LRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTK 239

Query: 772 NIVNYVSQLESTKKLLVVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLLMTR 951
           N+V YVS++E+TKK+L+VDGGPI+EKLKLATQNLHYVNVLPSIGLNVYSILLHDTL+M+R
Sbjct: 240 NMVKYVSKMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSR 299

Query: 952 DAVNRIVERMHTPINR 999
           DAV RIV RMHTPINR
Sbjct: 300 DAVERIVTRMHTPINR 315


>emb|CAN77922.1| hypothetical protein VITISV_027648 [Vitis vinifera]
          Length = 278

 Score =  419 bits (1076), Expect = e-115
 Identities = 219/300 (73%), Positives = 246/300 (82%), Gaps = 3/300 (1%)
 Frame = +1

Query: 109 MAVSLSRKILLRSFGSLSGLNNSRGIVHRSFESRTSSSEGGVLSFFARRMFCTST-LTPQ 285
           MAVS+SR+ LL +FG                 SR + S     SF + R   T+T LTP+
Sbjct: 1   MAVSISRR-LLXTFGP----------------SRLTGS-----SFLSSRSLSTTTMLTPE 38

Query: 286 SCEGAIPQELLMKQ--LAPDRTQGGYEDLIIPVTNFHYEDKGFMVLAGDVFDVPIRKDIV 459
           S   A P ELL  +  L P+RT G Y+DL+IPVTNFH EDKGFM LAGDVFDVPIRKDIV
Sbjct: 39  SSGVAFPPELLSTKTVLTPERTPGHYQDLVIPVTNFHNEDKGFMXLAGDVFDVPIRKDIV 98

Query: 460 HRVVRWQLAKRQQGTHSTKSISEVSGTGRKPWNQKGTGRARHGSLRGPQFRHGAVMHGPK 639
           HRVVRWQLAKRQQGTHSTK+ISEVSGTG+KPW QKGTGRARHG+LRGPQFR GA+MHGPK
Sbjct: 99  HRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGAIMHGPK 158

Query: 640 PRSHAFKLQKKVRRLGLKVALSARAAEGKLLIFEDLEVPTHKTKNIVNYVSQLESTKKLL 819
           PRSHA KL KKVRRLGLK+ALSAR AEGKLL+F+DLEVP+HKTKNIVNYV ++E+ KKLL
Sbjct: 159 PRSHAIKLNKKVRRLGLKIALSARTAEGKLLVFDDLEVPSHKTKNIVNYVKEMENXKKLL 218

Query: 820 VVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLLMTRDAVNRIVERMHTPINR 999
           +VDGGPI EKLKLATQNLHYVNVLPSIGLNVYSILLHDTL+M+R+AVN+IVERMHTPINR
Sbjct: 219 LVDGGPITEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRBAVNKIVERMHTPINR 278


>ref|NP_565463.1| large subunit ribosomal protein L4 [Arabidopsis thaliana]
           gi|18252969|gb|AAL62411.1| 50S ribosomal protein L4
           [Arabidopsis thaliana] gi|20197568|gb|AAD24390.2| 50S
           ribosomal protein L4 [Arabidopsis thaliana]
           gi|25084070|gb|AAN72167.1| 50S ribosomal protein L4
           [Arabidopsis thaliana] gi|330251866|gb|AEC06960.1| large
           subunit ribosomal protein L4 [Arabidopsis thaliana]
          Length = 300

 Score =  418 bits (1075), Expect = e-114
 Identities = 215/305 (70%), Positives = 251/305 (82%), Gaps = 8/305 (2%)
 Frame = +1

Query: 109 MAVSLSRKILLRSFGSLSGL------NNSRGIVHRSFESRTSSSEGGVLSFFARRMFCTS 270
           MA S+SR+I  R+FGS S L      N S         S T+  + G ++  + R   TS
Sbjct: 1   MAASISRRIF-RTFGSFSALGRSSSPNLSANTSGNGLASLTNDLKYG-MALLSNRKLSTS 58

Query: 271 TLTPQSCEGAIPQELLMKQ--LAPDRTQGGYEDLIIPVTNFHYEDKGFMVLAGDVFDVPI 444
            LTP   + + P +LL K+  L PDRT G Y+DL+IPVTNF  E+KGFMVLAGDVFDVPI
Sbjct: 59  ILTP---DDSFPSDLLTKKTVLTPDRTIGQYQDLVIPVTNFQNEEKGFMVLAGDVFDVPI 115

Query: 445 RKDIVHRVVRWQLAKRQQGTHSTKSISEVSGTGRKPWNQKGTGRARHGSLRGPQFRHGAV 624
           RKDI+H VVRWQLAKRQQGTHSTK++SEVSGTGRKPWNQKGTGRARHG+LRGPQFR G V
Sbjct: 116 RKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRKPWNQKGTGRARHGTLRGPQFRGGCV 175

Query: 625 MHGPKPRSHAFKLQKKVRRLGLKVALSARAAEGKLLIFEDLEVPTHKTKNIVNYVSQLES 804
           MHGPKPRSHA K+ K+VRRLGLK+AL+ARAAEGKLL+F+DL +PTHKTKNIVNY +Q+E+
Sbjct: 176 MHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKLLVFDDLGLPTHKTKNIVNYYNQMEN 235

Query: 805 TKKLLVVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLLMTRDAVNRIVERMH 984
           TKK+LVV+GGPI+EKLKLATQNLHYVN++PSIGLNVYSILLHDTLLM+RDAVN+IVERMH
Sbjct: 236 TKKVLVVEGGPIDEKLKLATQNLHYVNIIPSIGLNVYSILLHDTLLMSRDAVNKIVERMH 295

Query: 985 TPINR 999
           TPINR
Sbjct: 296 TPINR 300