BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00007958
         (1462 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280604.1| PREDICTED: 30S ribosomal protein S1, chlorop...   683   0.0  
sp|P29344.1|RR1_SPIOL RecName: Full=30S ribosomal protein S1, ch...   671   0.0  
ref|XP_002519282.1| tex protein-relatedtranscription accessory p...   658   0.0  
ref|XP_004147619.1| PREDICTED: 30S ribosomal protein S1, chlorop...   656   0.0  
ref|XP_002311368.1| predicted protein [Populus trichocarpa] gi|1...   655   0.0  

>ref|XP_002280604.1| PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera]
            gi|296083203|emb|CBI22839.3| unnamed protein product
            [Vitis vinifera]
          Length = 410

 Score =  683 bits (1763), Expect = 0.0
 Identities = 354/408 (86%), Positives = 373/408 (91%)
 Frame = +1

Query: 34   LAHQFSGLRCPPLSSHLSKKQPFTPNNKTTQKSVFFPIVSAVAISNAQTKERQRLKEMFE 213
            LA QF+GLRCPP+SS    K PF+P  K  QK  F  IVSAVAISNAQTKER +LKEMFE
Sbjct: 4    LAQQFTGLRCPPISSSRLSK-PFSP--KQPQKPSFVRIVSAVAISNAQTKERLKLKEMFE 60

Query: 214  EAYERCRTAPMEGISFTVEDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDITAKSSA 393
            +AYERCRTAP EG+SF+ +DF++AL+KYDFNSEIGTKVKGTVFCT+ NGALVDITAKSSA
Sbjct: 61   DAYERCRTAPTEGVSFSADDFYSALDKYDFNSEIGTKVKGTVFCTDTNGALVDITAKSSA 120

Query: 394  YLPVQEACIHKIKHVEEAGIFPGVREEFVIIGENEADDSLILSLRSIQYDLAWERCRQLQ 573
            YLPV EACIHKIKHVEEAGI PGVREEFVIIGENEADDSLILSLRSIQYDLAWERCRQLQ
Sbjct: 121  YLPVYEACIHKIKHVEEAGIVPGVREEFVIIGENEADDSLILSLRSIQYDLAWERCRQLQ 180

Query: 574  AEDVVVKGKVISGNKGGVVAIVEGLRGFVPFSQISSKSAAXXXXXXXXXXKFVEVDEEQS 753
            AEDVVVKGKV+  NKGGVVA+VEGLRGFVPFSQISSK+ A          KFVEVDEEQS
Sbjct: 181  AEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKTTAEELLDKELPVKFVEVDEEQS 240

Query: 754  RLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIA 933
            RLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV+DIA
Sbjct: 241  RLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIA 300

Query: 934  TVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIA 1113
            TVLQPGD LKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIA
Sbjct: 301  TVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIA 360

Query: 1114 QAEAMARADMLRFQPESGLTLSSDGILGPLSPDLPAEGVDLSDVPPAE 1257
            QAEAMARADMLRFQPESGLTL+SDGILGP+S DLPAEG+DLSDVPPAE
Sbjct: 361  QAEAMARADMLRFQPESGLTLNSDGILGPVSADLPAEGLDLSDVPPAE 408


>sp|P29344.1|RR1_SPIOL RecName: Full=30S ribosomal protein S1, chloroplastic; AltName:
            Full=CS1; Flags: Precursor gi|18060|emb|CAA46927.1|
            ribosomal protein S1 [Spinacia oleracea]
            gi|170143|gb|AAA34045.1| chloroplast ribosomal protein S1
            [Spinacia oleracea]
          Length = 411

 Score =  671 bits (1732), Expect = 0.0
 Identities = 348/411 (84%), Positives = 379/411 (92%), Gaps = 2/411 (0%)
 Frame = +1

Query: 28   SSLAHQFSG-LRCPPLS-SHLSKKQPFTPNNKTTQKSVFFPIVSAVAISNAQTKERQRLK 201
            +SLA Q +G LRCPPLS S+LSK  PF+P  K T K  F PIVSAVA+SNAQT+ERQ+LK
Sbjct: 2    ASLAQQLAGGLRCPPLSNSNLSK--PFSP--KHTLKPRFSPIVSAVAVSNAQTRERQKLK 57

Query: 202  EMFEEAYERCRTAPMEGISFTVEDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDITA 381
            ++FE+AYERCR APMEG+SFT++DFH AL+KYDFNSE+G++VKGTVFCT+ANGALVDITA
Sbjct: 58   QLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDITA 117

Query: 382  KSSAYLPVQEACIHKIKHVEEAGIFPGVREEFVIIGENEADDSLILSLRSIQYDLAWERC 561
            KSSAYLP+ EACI++IK+VEEAGI PGVREEFVIIGENEADDSLILSLR IQY+LAWERC
Sbjct: 118  KSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWERC 177

Query: 562  RQLQAEDVVVKGKVISGNKGGVVAIVEGLRGFVPFSQISSKSAAXXXXXXXXXXKFVEVD 741
            RQLQAEDVVVKGK++  NKGGVVA+VEGLRGFVPFSQISSKS+A          KFVEVD
Sbjct: 178  RQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEVD 237

Query: 742  EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 921
            EEQSRLV+SNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV
Sbjct: 238  EEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 297

Query: 922  ADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 1101
            +DIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 298  SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 357

Query: 1102 QRIAQAEAMARADMLRFQPESGLTLSSDGILGPLSPDLPAEGVDLSDVPPA 1254
            QRIAQAEAMARADMLRFQPESGLTLSSDGILGPL+ DLPAEG+DLS VPPA
Sbjct: 358  QRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSVVPPA 408


>ref|XP_002519282.1| tex protein-relatedtranscription accessory protein, putative [Ricinus
            communis] gi|223541597|gb|EEF43146.1| tex
            protein-relatedtranscription accessory protein, putative
            [Ricinus communis]
          Length = 412

 Score =  658 bits (1698), Expect = 0.0
 Identities = 342/412 (83%), Positives = 374/412 (90%), Gaps = 2/412 (0%)
 Frame = +1

Query: 28   SSLAHQFSGLRCPPLSS-HLSKKQPFTPNNKTTQKSVFFPIVSAVAISNAQTKERQRLKE 204
            +SLA QF+GLRC  LS+  ++KK     ++   +KS F  +VSAVAISNAQTKER++LK+
Sbjct: 2    ASLAQQFTGLRCTALSNCRVTKKASSLLSSSRPRKSRF--VVSAVAISNAQTKEREKLKQ 59

Query: 205  MFEEAYERCRTAPMEGISFTVEDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDITAK 384
            +FE+AYERCRTAPMEG++FT EDFH+ALEKYDFNSEIGT VKGTVF T+ANGA+VDITAK
Sbjct: 60   LFEDAYERCRTAPMEGVAFTAEDFHSALEKYDFNSEIGTTVKGTVFMTDANGAVVDITAK 119

Query: 385  SSAYLPVQEACIHKIKHVEEAGIFPGVREEFVIIGENEADDSLILSLRSIQYDLAWERCR 564
            SSAYLPVQEACIHKIKHVEEAGI PG+ +EFVIIGENEADDSLILSLR+IQYDL+WERCR
Sbjct: 120  SSAYLPVQEACIHKIKHVEEAGIVPGLTQEFVIIGENEADDSLILSLRAIQYDLSWERCR 179

Query: 565  QLQAEDVVVKGKVISGNKGGVVAIVEG-LRGFVPFSQISSKSAAXXXXXXXXXXKFVEVD 741
            QLQAEDV+VKGKV+  NKGGVVAIVEG LRGFVPFSQISSKS A          KFV+VD
Sbjct: 180  QLQAEDVIVKGKVVGANKGGVVAIVEGGLRGFVPFSQISSKSTAEELLEKELPLKFVDVD 239

Query: 742  EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 921
            EEQSRLVLSNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQISHDRV
Sbjct: 240  EEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 299

Query: 922  ADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 1101
            +DIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 300  SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 359

Query: 1102 QRIAQAEAMARADMLRFQPESGLTLSSDGILGPLSPDLPAEGVDLSDVPPAE 1257
            QRIAQAEAMARADMLRFQPESGL+LSSDGILGP++ D+PAEG+DLSDVP AE
Sbjct: 360  QRIAQAEAMARADMLRFQPESGLSLSSDGILGPVTSDMPAEGLDLSDVPSAE 411


>ref|XP_004147619.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis
            sativus] gi|449517357|ref|XP_004165712.1| PREDICTED: 30S
            ribosomal protein S1, chloroplastic-like [Cucumis
            sativus]
          Length = 413

 Score =  656 bits (1692), Expect = 0.0
 Identities = 337/413 (81%), Positives = 372/413 (90%), Gaps = 3/413 (0%)
 Frame = +1

Query: 28   SSLAHQFSGLRCPPLSSHLSKKQPFTPNNKTTQKSVFFPIVSAVA---ISNAQTKERQRL 198
            +S+A QF+GLRC PLSS    K PF+  +    KS   P+ +AV    I + QT+ER +L
Sbjct: 2    ASMAQQFTGLRCAPLSSSRLSK-PFSSKH-FLNKSRSLPVQAAVISGPIPSPQTRERFKL 59

Query: 199  KEMFEEAYERCRTAPMEGISFTVEDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDIT 378
            KE+FEEAYERCR AP+EGISFT+EDFH ALEKYDF+SE+GTKVKGTVFCT+ NGALVDIT
Sbjct: 60   KEVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVDIT 119

Query: 379  AKSSAYLPVQEACIHKIKHVEEAGIFPGVREEFVIIGENEADDSLILSLRSIQYDLAWER 558
            AKSSAYLP+QEACIH+IKHVEEAG+FPG+REEFVIIGENE+DDSLILSLRSIQYDLAWER
Sbjct: 120  AKSSAYLPLQEACIHRIKHVEEAGVFPGLREEFVIIGENESDDSLILSLRSIQYDLAWER 179

Query: 559  CRQLQAEDVVVKGKVISGNKGGVVAIVEGLRGFVPFSQISSKSAAXXXXXXXXXXKFVEV 738
            CRQLQAEDVVVKGKV+  NKGGVVA+VEGLRGFVPFSQIS+KS A          KFVEV
Sbjct: 180  CRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSNAEELLSKELPLKFVEV 239

Query: 739  DEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 918
            DEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR
Sbjct: 240  DEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 299

Query: 919  VADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 1098
            ++DIATVLQPGD+LKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF
Sbjct: 300  ISDIATVLQPGDSLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 359

Query: 1099 RQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLSPDLPAEGVDLSDVPPAE 1257
            RQRIAQAEA+ARADMLRFQPESGLTL++DGILGP++P+LP EG+DL+DVPPAE
Sbjct: 360  RQRIAQAEALARADMLRFQPESGLTLTTDGILGPITPELPVEGLDLNDVPPAE 412


>ref|XP_002311368.1| predicted protein [Populus trichocarpa] gi|118485696|gb|ABK94698.1|
            unknown [Populus trichocarpa] gi|222851188|gb|EEE88735.1|
            predicted protein [Populus trichocarpa]
          Length = 421

 Score =  655 bits (1689), Expect = 0.0
 Identities = 337/411 (81%), Positives = 370/411 (90%), Gaps = 1/411 (0%)
 Frame = +1

Query: 28   SSLAHQFSGLRCPPLS-SHLSKKQPFTPNNKTTQKSVFFPIVSAVAISNAQTKERQRLKE 204
            +SLA QF+GLRCPP+S S L+++      +K  + + F     AVAISNAQTKER++LK+
Sbjct: 2    ASLAQQFAGLRCPPISISRLTERA--ATFSKPKRAANFVVTAKAVAISNAQTKEREKLKQ 59

Query: 205  MFEEAYERCRTAPMEGISFTVEDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDITAK 384
            +FEEAYERCRTAPMEG+SFTVEDFH+AL+ YDFNSEIGT+VKGTVF T+ NGALVDITAK
Sbjct: 60   LFEEAYERCRTAPMEGVSFTVEDFHSALDAYDFNSEIGTRVKGTVFMTDNNGALVDITAK 119

Query: 385  SSAYLPVQEACIHKIKHVEEAGIFPGVREEFVIIGENEADDSLILSLRSIQYDLAWERCR 564
            SSAYLPVQEA IH+IK +EEAGI PG+REEFVIIGENEADDSLILSLRSI Y+LAWERCR
Sbjct: 120  SSAYLPVQEASIHRIKRLEEAGIVPGMREEFVIIGENEADDSLILSLRSIHYELAWERCR 179

Query: 565  QLQAEDVVVKGKVISGNKGGVVAIVEGLRGFVPFSQISSKSAAXXXXXXXXXXKFVEVDE 744
            QLQAEDV+VKGKV+ GNKGG+VA+VEGLRGFVPFSQISSKS            KFV+VDE
Sbjct: 180  QLQAEDVIVKGKVVGGNKGGLVAVVEGLRGFVPFSQISSKSTPEELLDKEFPLKFVDVDE 239

Query: 745  EQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVA 924
            EQSRL+LSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV+
Sbjct: 240  EQSRLILSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVS 299

Query: 925  DIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQ 1104
            DIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQ
Sbjct: 300  DIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQ 359

Query: 1105 RIAQAEAMARADMLRFQPESGLTLSSDGILGPLSPDLPAEGVDLSDVPPAE 1257
            RIAQAEAMARADMLRFQPESGLTLSSDGIL PL+ D+PAEG+DLSDV PA+
Sbjct: 360  RIAQAEAMARADMLRFQPESGLTLSSDGILSPLNSDMPAEGLDLSDVSPAD 410