BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00007808
         (5393 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...  1679   0.0  
emb|CBI29879.3| unnamed protein product [Vitis vinifera]             1672   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...  1599   0.0  
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1521   0.0  
ref|XP_003537204.1| PREDICTED: DNA-directed RNA polymerase I sub...  1512   0.0  

>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score = 1679 bits (4348), Expect = 0.0
 Identities = 942/1787 (52%), Positives = 1171/1787 (65%), Gaps = 56/1787 (3%)
 Frame = +3

Query: 39   TESVDSVKFSFLTAEEVESYSFKQVTSVELLDNLDRPVPGGLYDPALGPLEDHTICKSCG 218
            TE V++VKFSF T EEV  YSFK++TS  +LD++ RPVPGGLYDPALG ++++T C+SCG
Sbjct: 58   TEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPCQSCG 117

Query: 219  QSSFFCTGHCGHIEFICPVFNPLLFNVLFNIVRKMCFSCHHFMDARDQVEKCAAQAELIL 398
            Q SF+C GHCGHI+ +  V+NPLLFN+L N+++K CF CHHF  +   V+K  +Q ELI 
Sbjct: 118  QRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQLELIS 177

Query: 399  KGEIDAASNGDVVLQNDLSV---SDGN----------GAKDT-SDHLKRKSWTSLQYSHA 536
            KG++  A N D +  ++ S    SDG+           A+D  S HLK++ WTSLQ   A
Sbjct: 178  KGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQCIEA 237

Query: 537  MSMLDDFMKTKKKKCTRCSFKSPKITQPTFGWIHM-DTPDSTIRRNVLR-EHTQSSIDEA 710
            MS++D+F+K K + C  C  KSP++T+PTFGW HM    D+  R NV+R    +  +   
Sbjct: 238  MSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKLERPLSRV 297

Query: 711  EQEFITGGAGNANDSCTRGIETD-DDLQSSGAVYDGTPNSSTKAFRDLGVGNVPSEFGKQ 887
             +E  +    N ND    G   D D+  SS A  DG  ++ TK     G    P EF KQ
Sbjct: 298  AEEKSSSEVENVNDMFPWGDGVDTDETHSSIAPTDGIQDTVTKRLERKGA-QAPIEFIKQ 356

Query: 888  KALSKGPLLPSEVKDHLKLLWDNETQLCSLICDIHRERLSMSEKKRSYSMFFIDVLLVPP 1067
            K+   GPLLPSEV+D ++ LW+NE +LCS I DI +ERL  S  K  YSMFF++ +LVPP
Sbjct: 357  KSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPP 416

Query: 1068 VKFRPLTKGGDSVTHHPQTVLLSKVLQSNVDLCNAL--NNDRSQMESRSLVLQQSVNLLF 1241
            +KFRP +KG  SV  HPQTVLL KVLQ+N+ L NA   N++RS++ SR + LQQS+N+LF
Sbjct: 417  IKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRWMDLQQSINVLF 476

Query: 1242 GNKKSFGQ-RDNMGMGICQLLEKKEGLFRQKMMGKRVNYSCRSVISPDPYLAVNEIGIPP 1418
              K + GQ + + G GICQLLEKKEG+FRQKMMGKRVN++CRSVISPDPYLAVNEIGIPP
Sbjct: 477  DGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPP 536

Query: 1419 CFALKLTYPERVTDWNVKKLRNAILNGPDIHPGATEYSDQFSTRKLSNIGKMRTSVSKKF 1598
             FAL+LTYPE+VT WNV KLR+AI+NGP+IHPGAT Y D+ ST KL+   KMR S+S+K 
Sbjct: 537  YFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKL 596

Query: 1599 TTSRGDTSRGAATKPGRSVEHEHEGKVVSRHLQDGDIVLVNRQPTLHKPGIMAHVVRVLN 1778
             +SRG        +PGRS ++E EGK+V RHLQDGDIVLVNRQPTLHKP IMAHVVRVL 
Sbjct: 597  PSSRG-----VVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLK 651

Query: 1779 GEKTIRMHYANCSTYNADFDGDEMNVHFPQDEIARAEAFHIVNANNQYIIPTSGDTKRGL 1958
            GEKT+RMHYANCSTYNADFDGDEMNVHFPQDEI+RAEA++IVNANNQYI+P+ GD  RGL
Sbjct: 652  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGL 711

Query: 1959 IQDHIVSGVLLTKKDTFLSRDEYTHLLYSSGLFAAGRGSFVGKSGQKVSAIVSEDEIELL 2138
            IQDHIVS VLLTKKDTFL+R++Y  LLYSSGL ++G GSF+GK G+KVS + SEDE++ L
Sbjct: 712  IQDHIVSAVLLTKKDTFLTREQYNQLLYSSGL-SSGSGSFIGKPGKKVSVLDSEDEMQPL 770

Query: 2139 VPAILKPEPLWTGKQVITSLLNRMTKGEGLPPFTFEAKCTIDEDIWTSQCGD-------- 2294
            +PAI KPEPLW+GKQVIT++LN +T+G    PFT E    I  + + S+  +        
Sbjct: 771  LPAIWKPEPLWSGKQVITAVLNHITRGR--KPFTTEKDGKIPREYFGSEIDEKKSGKGKD 828

Query: 2295 ----------------DVQFRILKNDFLNGVVDKAQFGKYGMVHTVQELYGSKTAGALLS 2426
                            + +  I KN+ + GV+DKAQF KYG+VH VQELYGS TAG LLS
Sbjct: 829  PGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLS 888

Query: 2427 GLSRLFTVFLQLHGFTCGVDDLLLKQNIDIDRRTKLKDANKIVESVYLKFVKGEDDQGKH 2606
             LSRLFTVFLQ+HGFTCGVDDLL+  N DI R+ +L  +  I E V+ KF+      G +
Sbjct: 889  VLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFI------GSN 942

Query: 2607 SEKIDLQSKPVNAEDENKERKELQVCIEKKVRDHGESTISLLDKMMSSAANELTNAVNTI 2786
              KID    PV          +LQV +EK +  +GE+ I+ LD+MM +  NELT+ VN  
Sbjct: 943  HGKID----PV----------KLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVN-- 986

Query: 2787 IFPQKTKSLSEDKSNVESADKSRDNSADKSKDKLAENLKGGFSKPFPKNCFSLMTISGAK 2966
                                          KD L +    G  KPFPKNC SLMT +GAK
Sbjct: 987  ------------------------------KDLLLK----GLVKPFPKNCLSLMTTTGAK 1012

Query: 2967 GGQVNFXXXXXXXXXXXXEGKRVPLMISGKTLPCFPPWDPALRAGGFITDCFLTGLRPQE 3146
            G  VNF            EGKRVP M+SGKTLPCFPPWD A RAGGFI+D FLTGL PQE
Sbjct: 1013 GSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQE 1072

Query: 3147 YYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLECLMVGYDRTVRDADGSIVQFCYGEDG 3326
            YYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLECL V YD TVRD+DGSIVQF YG+DG
Sbjct: 1073 YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDG 1132

Query: 3327 VDVHKTSFMAKFDTLTSNHSVVLGRLMAQCKDDLEKSKDDHLTFDKCIEKLKEDHLTFDN 3506
            VDVH+TSF+ +F+ L  N  VV                          EK  +D   F+ 
Sbjct: 1133 VDVHQTSFITEFEALAVNEEVV-------------------------CEKFGQDG-KFNG 1166

Query: 3507 YIEKLPLKLVEVIYXXXXXXXXXXXXXXQHSSLVEKSRKLLPKEEMMKLMILKYLSSLAQ 3686
            YI+KLP +L                   +     +  +K   +++ + L+  KY+SSLAQ
Sbjct: 1167 YIQKLPKEL-------RKKTKKFIEGFMEERQDFDNMKK---QKDFVNLVKQKYISSLAQ 1216

Query: 3687 PGEPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKILTPIMSC 3866
            PGEPVGV+AAQSVGEPSTQMTLNTFH AG+ + NVTLGIPRLQEILM A+  I TPIM+C
Sbjct: 1217 PGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTC 1276

Query: 3867 PLQKGKKGEDAERLARSLRKVAVADVIKSMQVSVVPFFVQKHQASAVYKLKVELYPIDMY 4046
            PLQ G+  +DAERLA  L+KV VAD+ +SM+VS+VPF VQ HQ  ++YKLK++LY   +Y
Sbjct: 1277 PLQMGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALY 1336

Query: 4047 PKHSNIDLDDCEKTLKSIFVPELVRAIDSHVAMLSKIAGIVNIVQKGESDLSEGTNE-AD 4223
            P H+ I L+DCE+TL+++FV EL  AI +H+ +LSKI+GI N +    S  S+ T+E A 
Sbjct: 1337 PPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDAS 1396

Query: 4224 PSNKLNRKGXXXXXXXXXXXXXXXXXXAQKGKLQNSDEMEYEDGMESEYIEGEAS-GFES 4400
                    G                  AQK K Q SDEM+Y D  E E  EGE S G   
Sbjct: 1397 GDGLAGGNGDEDDDGEDDGGAEDLGLDAQKRKQQASDEMDYGDS-EGEPDEGEPSAGLTE 1455

Query: 4401 EIDQVELEDDNSSDDKAPTIE--TDDXXXXXXXXXXXXXXXXXXXAQDDTCNDLPHNTGG 4574
            EID VE E + S++++    +   +D                    +      +  +   
Sbjct: 1456 EIDLVEDEVEISNNEEVGISDPKDEDSKVPSKSKSSKNKKAKTEAKRKKRFRAIKKDFDR 1515

Query: 4575 RIFVPPSFKEHNFEVHFRSINEPHILLSQIAQKVAKNVYIKKLAKIDRCSVFGDTKTPEI 4754
             I V    K   FEVHFR  NEPHILL+QIAQK A  VYI+   KID C V    K   I
Sbjct: 1516 AILV--KAKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVI 1573

Query: 4755 QTSGDSETPEINP-------IGIETSGVDFHALWDMQDDLDIRLIESNDIHGILKTFGVE 4913
                D +  E  P         ++T+GVDF A W MQD+LD+R + SN++H +L TFGVE
Sbjct: 1574 YYGRDPKKRENIPGEEKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVE 1633

Query: 4914 AARATIVKELSKVFDLYGIKTDFRHLSLIADFMTQSGKYRPMSRH-GMADSISPFSKMSF 5090
            AARATI+KE+  VF+ YG+K + RHLSLIADFMT SG YRPM+RH G+A+S+SPFSKM+F
Sbjct: 1634 AARATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTF 1693

Query: 5091 ETASTFILNAAYRGEVDNLESPSASICLGQPVKMGTGCFDLMQKVQI 5231
            ETAS FI+ AA  G  DNLES SA ICLG PVKMGTGCFDLMQK++I
Sbjct: 1694 ETASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIEI 1740


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 1672 bits (4330), Expect = 0.0
 Identities = 939/1785 (52%), Positives = 1168/1785 (65%), Gaps = 54/1785 (3%)
 Frame = +3

Query: 39   TESVDSVKFSFLTAEEVESYSFKQVTSVELLDNLDRPVPGGLYDPALGPLEDHTICKSCG 218
            TE V++VKFSF T EEV  YSFK++TS  +LD++ RPVPGGLYDPALG ++++T C+SCG
Sbjct: 9    TEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPCQSCG 68

Query: 219  QSSFFCTGHCGHIEFICPVFNPLLFNVLFNIVRKMCFSCHHFMDARDQVEKCAAQAELIL 398
            Q SF+C GHCGHI+ +  V+NPLLFN+L N+++K CF CHHF  +   V+K  +Q ELI 
Sbjct: 69   QRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQLELIS 128

Query: 399  KGEIDAASNGDVVLQNDLSV---SDGN----------GAKDT-SDHLKRKSWTSLQYSHA 536
            KG++  A N D +  ++ S    SDG+           A+D  S HLK++ WTSLQ   A
Sbjct: 129  KGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQCIEA 188

Query: 537  MSMLDDFMKTKKKKCTRCSFKSPKITQPTFGWIHM-DTPDSTIRRNVLREHTQSSIDEAE 713
            MS++D+F+K K + C  C  KSP++T+PTFGW HM    D+  R NV+R           
Sbjct: 189  MSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIR----------- 237

Query: 714  QEFITGGAGNANDSCTRGIETDDDLQSSGAVYDGTPNSSTKAFRDLGVGNVPSEFGKQKA 893
                    G+  +    G++TD+   SS A  DG  ++ TK     G    P EF KQK+
Sbjct: 238  --------GSKLERPLNGVDTDET-HSSIAPTDGIQDTVTKRLERKGA-QAPIEFIKQKS 287

Query: 894  LSKGPLLPSEVKDHLKLLWDNETQLCSLICDIHRERLSMSEKKRSYSMFFIDVLLVPPVK 1073
               GPLLPSEV+D ++ LW+NE +LCS I DI +ERL  S  K  YSMFF++ +LVPP+K
Sbjct: 288  FFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIK 347

Query: 1074 FRPLTKGGDSVTHHPQTVLLSKVLQSNVDLCNAL--NNDRSQMESRSLVLQQSVNLLFGN 1247
            FRP +KG  SV  HPQTVLL KVLQ+N+ L NA   N++RS++ SR + LQQS+N+LF  
Sbjct: 348  FRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRWMDLQQSINVLFDG 407

Query: 1248 KKSFGQ-RDNMGMGICQLLEKKEGLFRQKMMGKRVNYSCRSVISPDPYLAVNEIGIPPCF 1424
            K + GQ + + G GICQLLEKKEG+FRQKMMGKRVN++CRSVISPDPYLAVNEIGIPP F
Sbjct: 408  KTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYF 467

Query: 1425 ALKLTYPERVTDWNVKKLRNAILNGPDIHPGATEYSDQFSTRKLSNIGKMRTSVSKKFTT 1604
            AL+LTYPE+VT WNV KLR+AI+NGP+IHPGAT Y D+ ST KL+   KMR S+S+K  +
Sbjct: 468  ALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPS 527

Query: 1605 SRGDTSRGAATKPGRSVEHEHEGKVVSRHLQDGDIVLVNRQPTLHKPGIMAHVVRVLNGE 1784
            SRG        +PGRS ++E EGK+V RHLQDGDIVLVNRQPTLHKP IMAHVVRVL GE
Sbjct: 528  SRG-----VVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGE 582

Query: 1785 KTIRMHYANCSTYNADFDGDEMNVHFPQDEIARAEAFHIVNANNQYIIPTSGDTKRGLIQ 1964
            KT+RMHYANCSTYNADFDGDEMNVHFPQDEI+RAEA++IVNANNQYI+P+ GD  RGLIQ
Sbjct: 583  KTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQ 642

Query: 1965 DHIVSGVLLTKKDTFLSRDEYTHLLYSSGLFAAGRGSFVGKSGQKVSAIVSEDEIELLVP 2144
            DHIVS VLLTKKDTFL+R++Y  LLYSSGL ++G GSF+GK G+KVS + SEDE++ L+P
Sbjct: 643  DHIVSAVLLTKKDTFLTREQYNQLLYSSGL-SSGSGSFIGKPGKKVSVLDSEDEMQPLLP 701

Query: 2145 AILKPEPLWTGKQVITSLLNRMTKGEGLPPFTFEAKCTIDEDIWTSQCGD---------- 2294
            AI KPEPLW+GKQVIT++LN +T+G    PFT E    I  + + S+  +          
Sbjct: 702  AIWKPEPLWSGKQVITAVLNHITRGR--KPFTTEKDGKIPREYFGSEIDEKKSGKGKDPG 759

Query: 2295 --------------DVQFRILKNDFLNGVVDKAQFGKYGMVHTVQELYGSKTAGALLSGL 2432
                          + +  I KN+ + GV+DKAQF KYG+VH VQELYGS TAG LLS L
Sbjct: 760  SDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVL 819

Query: 2433 SRLFTVFLQLHGFTCGVDDLLLKQNIDIDRRTKLKDANKIVESVYLKFVKGEDDQGKHSE 2612
            SRLFTVFLQ+HGFTCGVDDLL+  N DI R+ +L  +  I E V+ KF+      G +  
Sbjct: 820  SRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFI------GSNHG 873

Query: 2613 KIDLQSKPVNAEDENKERKELQVCIEKKVRDHGESTISLLDKMMSSAANELTNAVNTIIF 2792
            KID    PV          +LQV +EK +  +GE+ I+ LD+MM +  NELT+ VN    
Sbjct: 874  KID----PV----------KLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVN---- 915

Query: 2793 PQKTKSLSEDKSNVESADKSRDNSADKSKDKLAENLKGGFSKPFPKNCFSLMTISGAKGG 2972
                                        KD L +    G  KPFPKNC SLMT +GAKG 
Sbjct: 916  ----------------------------KDLLLK----GLVKPFPKNCLSLMTTTGAKGS 943

Query: 2973 QVNFXXXXXXXXXXXXEGKRVPLMISGKTLPCFPPWDPALRAGGFITDCFLTGLRPQEYY 3152
             VNF            EGKRVP M+SGKTLPCFPPWD A RAGGFI+D FLTGL PQEYY
Sbjct: 944  TVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYY 1003

Query: 3153 FHCMAGREGLVDTAVKTSRSGYLQRCLVKNLECLMVGYDRTVRDADGSIVQFCYGEDGVD 3332
            FHCMAGREGLVDTAVKTSRSGYLQRCL+KNLECL V YD TVRD+DGSIVQF YG+DGVD
Sbjct: 1004 FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVD 1063

Query: 3333 VHKTSFMAKFDTLTSNHSVVLGRLMAQCKDDLEKSKDDHLTFDKCIEKLKEDHLTFDNYI 3512
            VH+TSF+ +F+ L  N  VV                          EK  +D   F+ YI
Sbjct: 1064 VHQTSFITEFEALAVNEEVV-------------------------CEKFGQDG-KFNGYI 1097

Query: 3513 EKLPLKLVEVIYXXXXXXXXXXXXXXQHSSLVEKSRKLLPKEEMMKLMILKYLSSLAQPG 3692
            +KLP +L                   +     +  +K   +++ + L+  KY+SSLAQPG
Sbjct: 1098 QKLPKEL-------RKKTKKFIEGFMEERQDFDNMKK---QKDFVNLVKQKYISSLAQPG 1147

Query: 3693 EPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKILTPIMSCPL 3872
            EPVGV+AAQSVGEPSTQMTLNTFH AG+ + NVTLGIPRLQEILM A+  I TPIM+CPL
Sbjct: 1148 EPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPL 1207

Query: 3873 QKGKKGEDAERLARSLRKVAVADVIKSMQVSVVPFFVQKHQASAVYKLKVELYPIDMYPK 4052
            Q G+  +DAERLA  L+KV VAD+ +SM+VS+VPF VQ HQ  ++YKLK++LY   +YP 
Sbjct: 1208 QMGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPP 1267

Query: 4053 HSNIDLDDCEKTLKSIFVPELVRAIDSHVAMLSKIAGIVNIVQKGESDLSEGTNE-ADPS 4229
            H+ I L+DCE+TL+++FV EL  AI +H+ +LSKI+GI N +    S  S+ T+E A   
Sbjct: 1268 HTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDASGD 1327

Query: 4230 NKLNRKGXXXXXXXXXXXXXXXXXXAQKGKLQNSDEMEYEDGMESEYIEGEAS-GFESEI 4406
                  G                  AQK K Q SDEM+Y D  E E  EGE S G   EI
Sbjct: 1328 GLAGGNGDEDDDGEDDGGAEDLGLDAQKRKQQASDEMDYGDS-EGEPDEGEPSAGLTEEI 1386

Query: 4407 DQVELEDDNSSDDKAPTIE--TDDXXXXXXXXXXXXXXXXXXXAQDDTCNDLPHNTGGRI 4580
            D VE E + S++++    +   +D                    +      +  +    I
Sbjct: 1387 DLVEDEVEISNNEEVGISDPKDEDSKVPSKSKSSKNKKAKTEAKRKKRFRAIKKDFDRAI 1446

Query: 4581 FVPPSFKEHNFEVHFRSINEPHILLSQIAQKVAKNVYIKKLAKIDRCSVFGDTKTPEIQT 4760
             V    K   FEVHFR  NEPHILL+QIAQK A  VYI+   KID C V    K   I  
Sbjct: 1447 LV--KAKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYY 1504

Query: 4761 SGDSETPEINP-------IGIETSGVDFHALWDMQDDLDIRLIESNDIHGILKTFGVEAA 4919
              D +  E  P         ++T+GVDF A W MQD+LD+R + SN++H +L TFGVEAA
Sbjct: 1505 GRDPKKRENIPGEEKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAA 1564

Query: 4920 RATIVKELSKVFDLYGIKTDFRHLSLIADFMTQSGKYRPMSRH-GMADSISPFSKMSFET 5096
            RATI+KE+  VF+ YG+K + RHLSLIADFMT SG YRPM+RH G+A+S+SPFSKM+FET
Sbjct: 1565 RATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFET 1624

Query: 5097 ASTFILNAAYRGEVDNLESPSASICLGQPVKMGTGCFDLMQKVQI 5231
            AS FI+ AA  G  DNLES SA ICLG PVKMGTGCFDLMQK++I
Sbjct: 1625 ASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIEI 1669


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score = 1599 bits (4141), Expect = 0.0
 Identities = 906/1800 (50%), Positives = 1143/1800 (63%), Gaps = 68/1800 (3%)
 Frame = +3

Query: 36   ATESVDSVKFSFLTAEEVESYSFKQVTSVELLDNLDRPVPGGLYDPALGPLEDHTICKSC 215
            ATES+DS+ FSFLT EEV  +SF ++T+  LLD ++RPVPGGLYDPALGPL + TICK+C
Sbjct: 11   ATESIDSISFSFLTDEEVRKHSFVKITNPRLLDLVERPVPGGLYDPALGPLSERTICKTC 70

Query: 216  GQSSFFCTGHCGHIEFICPVFNPLLFNVLFNIVRKMCFSCHHFMDARDQVEKCAAQAELI 395
            GQ S  C GHCGHI+ + PV+NPLLFN L  ++++ CF C HF   R QVEKC  Q ELI
Sbjct: 71   GQRSTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFLCFHFRMQRGQVEKCIKQLELI 130

Query: 396  LKGEIDAASNGDVVL--------QNDLS------VSDGNGAKDTSDHLKRKSWTSLQYSH 533
            +KG+I  A   + V         ++DLS      +  G    D  +H +++ WTSLQ++ 
Sbjct: 131  VKGDIVGAKRLESVSPSEALYPEESDLSHESCPTIHSGVQCND-GEHTRQQGWTSLQFTE 189

Query: 534  AMSMLDDFMKTKKKKCTRCSFKSPKITQPTFGWIHMD-TPDSTIRRNVLREHTQSSIDEA 710
            AMS+L++F+K K KKC  C   +P IT+PTFGW H     D++IR NV+  H    +  +
Sbjct: 190  AMSVLNNFLKPKFKKCKNCESSNPNITKPTFGWFHTSGMSDASIRANVITGHQLGGLLGS 249

Query: 711  EQEFITGGAGNANDSCTRGIETDDDLQSSGAVYDGTPNSSTKAFRDLGVGNVPSEFGKQK 890
            E E               G    +D    G  + GT     K  +++       EF +QK
Sbjct: 250  EIE---------------GTTDVEDAAEPGDQHSGTKKHKKKERKEV------LEFTRQK 288

Query: 891  ALSKGPLLPSEVKDHLKLLWDNETQLCSLICDIHRERLSMSEKKRSYSMFFIDVLLVPPV 1070
            +     LLPSEVK+ L+LLW NE ++CS I D+ ++     ++K   +MFF++ +LVPP+
Sbjct: 289  STFSKQLLPSEVKEKLELLWKNEARICSFISDLQQQEFG--KRKAGPAMFFLETILVPPI 346

Query: 1071 KFRPLTKGGDSVTHHPQTVLLSKVLQSNVDLCNA-LNNDRSQMESRSLVLQQSVNLLFGN 1247
            KFRP TKGGDSV  HPQTVLLSKVLQSN+ L +A +N + S++  R L LQQS+N LF +
Sbjct: 347  KFRPPTKGGDSVMEHPQTVLLSKVLQSNISLGDAHINKEHSKIVRRWLDLQQSINTLFDS 406

Query: 1248 K--KSFGQRDNMGMGICQLLEKKEGLFRQKMMGKRVNYSCRSVISPDPYLAVNEIGIPPC 1421
            K  K  GQR+    GICQLLEKKEGLFRQKMMGKRVNY+CRSVISPDPY+ VNEIGIPPC
Sbjct: 407  KTAKGPGQREG-APGICQLLEKKEGLFRQKMMGKRVNYACRSVISPDPYIGVNEIGIPPC 465

Query: 1422 FALKLTYPERVTDWNVKKLRNAILNGPDIHPGATEYSDQFSTRKLSNIGKMRTSVSKKFT 1601
            FA+KLTYPERVT WN+ KLRNA++NG + HPGAT Y D+ S  KL    K R S+S+K  
Sbjct: 466  FAVKLTYPERVTPWNIAKLRNAVINGSECHPGATHYVDKLSINKLPPARKARISISRKLP 525

Query: 1602 TSRGDTSRGAATKPGRSVEHEHEGKVVSRHLQDGDIVLVNRQPTLHKPGIMAHVVRVLNG 1781
            +SRG     A T+ G+  E E EGK+V RHLQDGD+VLVNRQPTLHKP IMAHVVRVL G
Sbjct: 526  SSRG-----AVTQAGKGSECEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 580

Query: 1782 EKTIRMHYANCS-TYNADFDGDEMNVHFPQDEIARAEAFHIVNANNQYIIPTSGDTKRGL 1958
            EKT+RMHYANCS TYNADFDGDEMNVHFPQDE++RAEA++IVNANNQ++ P++G+  RGL
Sbjct: 581  EKTLRMHYANCSITYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQFVRPSNGEPLRGL 640

Query: 1959 IQDHIVSGVLLTKKDTFLSRDEYTHLLYSSGLFAAGRGSFVGKSGQKVSAIVSEDEIELL 2138
            IQDHIVS VLLTKKDTFLS+DE+  LLYSSG+   G  SF G+ GQKV    SEDEI+ L
Sbjct: 641  IQDHIVSAVLLTKKDTFLSQDEFNQLLYSSGVSTVGPNSFHGRPGQKVLWSRSEDEIQTL 700

Query: 2139 VPAILKPEPLWTGKQVITSLLNRMTKGEGLPPFTFEAKCTIDEDIWTSQCGDDV------ 2300
             PAI KP+PLWTGKQVIT++LN +T     PPFT E    I  + + S+  +D       
Sbjct: 701  PPAIWKPKPLWTGKQVITAILNHITSDH--PPFTVEKDAKIPSNFFKSRANEDKPCQEEK 758

Query: 2301 --------------QFRILKNDFLNGVVDKAQFGKYGMVHTVQELYGSKTAGALLSGLSR 2438
                          +  + KN+ + GV+DK QFG+YG+VHTV EL GS TAG LLS LSR
Sbjct: 759  SDKDAPAEKEPDEEKMLVYKNELVRGVIDKGQFGEYGLVHTVHELLGSHTAGILLSVLSR 818

Query: 2439 LFTVFLQLHGFTCGVDDLLLKQNIDIDRRTKLKDANKIVESVYLKFVKGEDDQGKHSEKI 2618
            LFT +LQ+HGFTCGVDDLL+  N D +R+ +L+   K  E+V+  F+      G   EKI
Sbjct: 819  LFTAYLQMHGFTCGVDDLLILTNKDEERKKQLEWCEKSGEAVHRNFI------GIKDEKI 872

Query: 2619 DLQSKPVNAEDENKERKELQVCIEKKVRDHGESTISLLDKMMSSAANELTNAVNTIIFPQ 2798
             +   PV           +Q+ IEK +R  G+S ++ LD+ MS+  N             
Sbjct: 873  KID--PV----------AMQLNIEKTIRSDGDSALAYLDRQMSNELN------------- 907

Query: 2799 KTKSLSEDKSNVESADKSRDNSADKSKDKLAENLKGGFSKPFPKNCFSLMTISGAKGGQV 2978
             TK+ S   SN+                     L  G  KP  KNC SLMT SGAKG +V
Sbjct: 908  -TKTSSGVISNL---------------------LSDGLLKPSGKNCISLMTTSGAKGSKV 945

Query: 2979 NFXXXXXXXXXXXXEGKRVPLMISGKTLPCFPPWDPALRAGGFITDCFLTGLRPQEYYFH 3158
            NF            EGKRVP M+SGKTLPCF PWD A R+GG+ITD FLTGLRPQEYYFH
Sbjct: 946  NFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARSGGYITDRFLTGLRPQEYYFH 1005

Query: 3159 CMAGREGLVDTAVKTSRSGYLQRCLVKNLECLMVGYDRTVRDADGSIVQFCYGEDGVDVH 3338
            CMAGREGLVDTAVKTSRSGYLQRCL+KNLECL +GYD TVRDADGS+VQF YGEDGVDVH
Sbjct: 1006 CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIGYDHTVRDADGSVVQFYYGEDGVDVH 1065

Query: 3339 KTSFMAKFDTLTSNHSVVLGRLMAQCKDDLEKSKDDHLTFDKCIEKLKEDHLTFDNYIEK 3518
            +TSF+AKF  L  N  ++  R   Q                            F++YI +
Sbjct: 1066 QTSFIAKFKELALNQDMIYKRSGGQLG-------------------------AFNSYISE 1100

Query: 3519 LPLKLVEVIYXXXXXXXXXXXXXXQHSSLVEKSRKLLPKEEMMKLMILKYLSSLAQPGEP 3698
            LP  L E                   S +   +  L+ +E++  LM  K+L SLAQPGEP
Sbjct: 1101 LPEALKE----------KADRFLDDFSIMGRIASNLVKREDLYNLMKQKFLLSLAQPGEP 1150

Query: 3699 VGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKILTPIMSCPLQK 3878
            VGV+AAQSVGEPSTQMTLNTFH AG+ + NVTLGIPRLQEILM AS  I TPIM+CPLQ+
Sbjct: 1151 VGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIKTPIMTCPLQE 1210

Query: 3879 GKKGEDAERLARSLRKVAVADVIKSMQVSVVPFFVQKHQASAVYKLKVELYPIDMYPKHS 4058
            G+  EDA+ LA  LRKV VAD+++SM+VSVVPF +Q      +YKLK++LY    YP+++
Sbjct: 1211 GRTNEDADHLADKLRKVTVADIVESMEVSVVPFAIQDGGVCRIYKLKMKLYRPAHYPQYA 1270

Query: 4059 NIDLDDCEKTLKSIFVPELVRAIDSHVAMLSKIAGIVNIVQKGESDLSEGTNE---ADPS 4229
            NI ++D E+TL+ +F+ EL  AI +H+ +LS+I+GI + + +  S  S   +E    D S
Sbjct: 1271 NISVEDWEETLEVVFLRELEDAIQNHMFLLSRISGIKDFLPESRSRASGEADEDVAGDMS 1330

Query: 4230 NKLNRKGXXXXXXXXXXXXXXXXXXAQKGKLQNSDEMEYEDGMESEYIEGEA------SG 4391
            ++  R                    AQK KLQ +DEM+Y+DG E E  EGE+      SG
Sbjct: 1331 HREER--DDDNDDDDGERADDLGLDAQKRKLQATDEMDYDDGFEEELNEGESTASEEESG 1388

Query: 4392 FESEIDQVELEDDNSSDDKAPTIETDDXXXXXXXXXXXXXXXXXXXAQDDTCND------ 4553
            FESEIDQ + E + S+D       ++                    +  +   D      
Sbjct: 1389 FESEIDQGDNETEISNDVMLDNEASETLPLRKPSKPKSKKKAAESPSHGEKSKDKKKKPK 1448

Query: 4554 ------LPHNTGGRIFVPPSFKEHNFEVHFRSINEPHILLSQIAQKVAKNVYIKKLAKID 4715
                  +  +    IFV    ++ +FEVHF+  NEPHILL++IAQK AK VYI+   KI+
Sbjct: 1449 AKRKSRISKDFDRAIFV--EARKMHFEVHFKFTNEPHILLAEIAQKTAKKVYIQNPGKIE 1506

Query: 4716 RCSVFGDTKTPEIQTSGD-SETPEINP------IGIETSGVDFHALWDMQDDLDIRLIES 4874
            +C V    ++  I    D  E  ++ P        +  +GVDF+  W MQD LD+R I S
Sbjct: 1507 QCRVTDCKESQVIYYGKDPKERVDLKPDVKEKVPALHATGVDFNTFWKMQDHLDVRYIYS 1566

Query: 4875 NDIHGILKTFGVEAARATIVKELSKVFDLYGIKTDFRHLSLIADFMTQSGKYRPMSR-HG 5051
            N+IH +LKT+GVEAAR TI++E++ VF  YGI    RHLSLIADFMT +G YRPMSR  G
Sbjct: 1567 NNIHAMLKTYGVEAARETIIREINHVFKSYGIAVSNRHLSLIADFMTHTGGYRPMSRMGG 1626

Query: 5052 MADSISPFSKMSFETASTFILNAAYRGEVDNLESPSASICLGQPVKMGTGCFDLMQKVQI 5231
            +A+SISPFSKMSFETAS FI+ AA  GE+DNLE+PSA ICLG PVKMGTG FDLMQK++I
Sbjct: 1627 IAESISPFSKMSFETASKFIVEAALHGEIDNLETPSARICLGLPVKMGTGSFDLMQKLEI 1686


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score = 1521 bits (3938), Expect = 0.0
 Identities = 869/1780 (48%), Positives = 1120/1780 (62%), Gaps = 48/1780 (2%)
 Frame = +3

Query: 36   ATESVDSVKFSFLTAEEVESYSFKQVTSVELLDNLDRPVPGGLYDPALGPLEDHTICKSC 215
            A+ESV  V FSF+T EEV   S  +VT+  LLD + RPV GGLYDPA+G L++ T+CKSC
Sbjct: 14   ASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKSC 73

Query: 216  GQSSFFCTGHCGHIEFICPVFNPLLFNVLFNIVRKMCFSCHHFMDARDQVEKCAAQAELI 395
            GQ  F+C GHCGHI+ + PV+NPLLF +L N +R  CFSCHHF      VE C    ELI
Sbjct: 74   GQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTLLELI 133

Query: 396  LKGEIDAASNGDVVLQNDLSVSDGNGAKDTSDHL--KRKSWTSLQYSHAMSMLDDFMKTK 569
            L GEI  A   +    N  S +  + +  T +    + ++WTSLQ+S A+S++  F+K K
Sbjct: 134  LDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVVTKFLKPK 193

Query: 570  KKKCTRCSFKSPKITQPTFGWIHMDTPDSTIRRNVLREHTQSSIDEAEQEFITGGAGNAN 749
            +  C  C  KSPKIT+PTFGW HM       +R        ++I  ++   ++ GA    
Sbjct: 194  QSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKR-------ANAIRRSKPVSVSSGA---- 242

Query: 750  DSCTRGIETDDDLQSSGAVYDGTPNSSTKAFRDLGVGNVPSEFGKQKALSKGPLLPSEVK 929
                 G+ + ++        + T  ++ + F D     V  E   QK  S G LLPSEVK
Sbjct: 243  ----EGVSSLEE--------ETTTEATVEDFED-----VSPEVFMQKNFSSGHLLPSEVK 285

Query: 930  DHLKLLWDNETQLCSLICDIHRERLSMSEKKRSYSMFFIDVLLVPPVKFRPLTKGGDSVT 1109
            D LK LW NE  LCS I DI ++       K  +SMFF++ +LVPP+KFRP  KGGDSV 
Sbjct: 286  DILKRLWKNEALLCSFISDISQQGHG---NKAGHSMFFLESVLVPPIKFRPPAKGGDSVM 342

Query: 1110 HHPQTVLLSKVLQSNVDLCN--ALNNDRSQMESRSLVLQQSVNLLFGNKKSFGQ-RDNMG 1280
             HPQTVLL+KVLQSN+ L N  A  ++ S++    + LQQS+N+LF +K + G  +++  
Sbjct: 343  EHPQTVLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDAS 402

Query: 1281 MGICQLLEKKEGLFRQKMMGKRVNYSCRSVISPDPYLAVNEIGIPPCFALKLTYPERVTD 1460
            +GICQLLEKKEG+FRQKMMGKRVN++CRSVISPDPYLAVNEIGIPP FAL+LTYPERVT 
Sbjct: 403  LGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTA 462

Query: 1461 WNVKKLRNAILNGPDIHPGATEYSDQFSTRKLS--NIGKMRTSVSKKFTTSRGDTSRGAA 1634
            WNV+KLRNAI+NGP+ HPGAT Y D+ +T KL+     K R S+S+K  +SRG       
Sbjct: 463  WNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGC 522

Query: 1635 TKPGRSVEHEHEGKVVSRHLQDGDIVLVNRQPTLHKPGIMAHVVRVLNGEKTIRMHYANC 1814
                   ++E EGK+V+RHLQDGDIVLVNRQPTLHKP IMAHVVRVL GEKTIRMHYANC
Sbjct: 523  D------DYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANC 576

Query: 1815 S-TYNADFDGDEMNVHFPQDEIARAEAFHIVNANNQYIIPTSGDTKRGLIQDHIVSGVLL 1991
            S TYNADFDGDEMNVHFPQDEI+RAEA++IVNANNQY+ PTSG+  R LIQDHI+S VLL
Sbjct: 577  SITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLL 636

Query: 1992 TKKDTFLSRDEYTHLLYSSGLFAAGRGSFVGKSGQKVSAIVSEDEIELLVPAILKPEPLW 2171
            TKKDTFL+ DE++ LLYSSG+  +   +   K GQK+  +  + E+  ++PA+ KPEPLW
Sbjct: 637  TKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLW 696

Query: 2172 TGKQVITSLLNRMTKGEGLPPFTFEAKCTIDEDIWTSQCG------------------DD 2297
            TGKQV+T+LL+ +T+G   PPF  E    I         G                  DD
Sbjct: 697  TGKQVVTALLDHITQGS--PPFFVEKDVKIPRGFLILDEGNSKKKEHTKVDKLKAARLDD 754

Query: 2298 VQFRILKNDFLNGVVDKAQFGKYGMVHTVQELYGSKTAGALLSGLSRLFTVFLQLHGFTC 2477
                I KN+ + GV+DKAQFG YG+VHTVQELYGS TAG LLS +SRLFTVFLQ HGFTC
Sbjct: 755  DSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTC 814

Query: 2478 GVDDLLLKQNIDIDRRTKLKDANKIVESVYLKFVKGEDDQGKHSEKIDLQSKPVNAEDEN 2657
            GVDDLLL + +D +R  +L+   KI E V+L F+K +D      EK+D  +         
Sbjct: 815  GVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKD-----GEKLDPMT--------- 860

Query: 2658 KERKELQVCIEKKVRDHGESTISLLDKMMSSAANELTNAVNTIIFPQKTKSLSEDKSNVE 2837
                 LQ+ IEK +  +GE+ ++ LD+ M+S  NE T     +                 
Sbjct: 861  -----LQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVL----------------- 898

Query: 2838 SADKSRDNSADKSKDKLAENLKGGFSKPFPKNCFSLMTISGAKGGQVNFXXXXXXXXXXX 3017
                         KD L+E    G  KP  KNC SLMT SGAKGG  NF           
Sbjct: 899  -------------KDLLSE----GLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQ 941

Query: 3018 XEGKRVPLMISGKTLPCFPPWDPALRAGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAV 3197
             EGKRVP M+SGKTLPCFPPWD A RAGGFI D FLTGLRPQEYYFHCMAGREGLVDTAV
Sbjct: 942  LEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAV 1001

Query: 3198 KTSRSGYLQRCLVKNLECLMVGYDRTVRDADGSIVQFCYGEDGVDVHKTSFMAKFDTLTS 3377
            KTSRSGYLQRCL+KNLE L + YD TVRDADGS++QF YGEDGVDVHKT+F+ KF+ L +
Sbjct: 1002 KTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEALAA 1061

Query: 3378 NHSVVLGRLMAQCKDDLEKSKDDHLTFDKCIEKLKEDHLTFDNYIEKLPLKLVEVIYXXX 3557
            N  ++               ++ H    K           ++ +I +LP  L E      
Sbjct: 1062 NQDMLY--------------ENSHHQLGK-----------YNVFINELPSALRE------ 1090

Query: 3558 XXXXXXXXXXXQHSSLVEKSRKLLPKEEMMKLMILKYLSSLAQPGEPVGVIAAQSVGEPS 3737
                        +S   +K   L+ KE+ ++L+  KYLSSLAQPGEPVGV+AAQS+GEPS
Sbjct: 1091 ------KGEFIYNSLSKDKVPGLVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPS 1144

Query: 3738 TQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKILTPIMSCPLQKGKKGEDAERLARS 3917
            TQMTLNTFHHAG+ + NVTLGIPRLQEILM AS+ I TPIM+CPL++G   + A+ LA  
Sbjct: 1145 TQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANK 1204

Query: 3918 LRKVAVADVIKSMQVSVVPFFVQKHQASAVYKLKVELYPIDMYPKHSNIDLDDCEKTLKS 4097
            L+K+ VAD+I+SM V+VVPF  +K +  ++YKL+++ YP++   +H +I  +D E TL++
Sbjct: 1205 LKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLET 1264

Query: 4098 IFVPELVRAIDSHVAMLSKIAGIVNIVQKGESDLSEGTNEADP-SNKLNRKGXXXXXXXX 4274
            +F+ EL   I+  + +LSKI GI   V   +   S+G++E D  S+    +         
Sbjct: 1265 VFLEELEGLIEREMVLLSKINGIKXFVPDSQ---SKGSSEGDEVSSSRQEEMDDDDEGND 1321

Query: 4275 XXXXXXXXXXAQKGKLQNSDEMEYEDGMESEYIEGEAS-GFESEIDQ-----------VE 4418
                       +K KLQ +DEM+YED  E +    E+S GFESE+DQ           +E
Sbjct: 1322 LDVAEDLGSDXEKQKLQANDEMDYEDDSEDDLNAKESSTGFESEVDQGDEAEITNNDMIE 1381

Query: 4419 LEDDNSSDDKAPTIETDDXXXXXXXXXXXXXXXXXXXAQDDTCNDLPHNTGGRIFVPPSF 4598
            +  D++S+++   ++                              +   T   IFV    
Sbjct: 1382 IVKDSASENQPEIVDVSKSMSKEKTTETSKEKKKVKSEL------VRKETDRSIFV--EA 1433

Query: 4599 KEHNFEVHFRSINEPHILLSQIAQKVAKNVYIKKLAKIDRCSVFGDTKTPEIQTSGDS-- 4772
            KE++FEVHF+  NEPH LLSQI Q+ A+ V I++  KI +C      K  ++   G++  
Sbjct: 1434 KENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQI-TCKEGQVIYHGNNLK 1492

Query: 4773 ETPEINP------IGIETSGVDFHALWDMQDDLDIRLIESNDIHGILKTFGVEAARATIV 4934
            E   + P        ++TSGVDF  LW+MQD+LD+R I SNDIH +L+T+GVEAARATI+
Sbjct: 1493 ERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARATII 1552

Query: 4935 KELSKVFDLYGIKTDFRHLSLIADFMTQSGKYRPMSR-HGMADSISPFSKMSFETASTFI 5111
            +E+  +F  YGI  + RHLSL+AD+MT SG YRPMSR  G++DSISPFS+M+FETA  FI
Sbjct: 1553 REIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSISPFSRMTFETAGKFI 1612

Query: 5112 LNAAYRGEVDNLESPSASICLGQPVKMGTGCFDLMQKVQI 5231
            + AA  GEVDNLE+PS+ ICLG PVKMGTG FDLMQK+++
Sbjct: 1613 VQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLMQKIEV 1652


>ref|XP_003537204.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1653

 Score = 1512 bits (3914), Expect = 0.0
 Identities = 872/1785 (48%), Positives = 1102/1785 (61%), Gaps = 53/1785 (2%)
 Frame = +3

Query: 36   ATESVDSVKFSFLTAEEVESYSFKQVTSVELLDNLDRPVPGGLYDPALGPLEDHTICKSC 215
            AT SV++V FSFLT +E+   S  ++TS  L+D L  PVP GLYD ALGP +D ++CKSC
Sbjct: 8    ATNSVEAVAFSFLTDDEIRRSSRVKITSPILVDFLLHPVPDGLYDAALGPFDDKSLCKSC 67

Query: 216  GQSSFFCTGHCGHIEFICPVFNPLLFNVLFNIVRKMCFSCHHFMDARDQVEKCAAQAELI 395
            GQ+S  C GH GHIE + PV+NPL+FN+L NI+++ CF+CHHF     +V+   +Q ELI
Sbjct: 68   GQTSKHCPGHFGHIELVSPVYNPLMFNILSNILQRTCFTCHHFRAPSKEVDIRTSQLELI 127

Query: 396  LKGEIDAASNGDVVLQN--------DLSVSDGNGAKDTSDHLKR--KSWTSLQYSHAMSM 545
            +KG+I  A   + ++          D S+  G+G +      ++  ++WTSLQ+S AMS+
Sbjct: 128  MKGDIIRAKRLESIIPGKSVDSFNPDESIHPGDGDESQCYSAEQLGENWTSLQFSEAMSV 187

Query: 546  LDDFMKTKKKKCTRCSFKSPKITQPTFGWIHMDTPDSTIRRNVLREHTQSSID-EAEQEF 722
            L   +  K KKC +C  K+PKI++PTFGW HM+     +  +  R  T  S++ E   + 
Sbjct: 188  LRKLLTKKHKKCQKCGAKNPKISKPTFGWFHMNV----LSADETRADTIRSVESETTNDD 243

Query: 723  ITGGAGNANDSCTRGIETDDDLQSSGAVYDGTPNSSTKAFRDLGVGNVPSEFGKQKALSK 902
            I+ G G+  D         +D+ S+G            +++            +Q  LS 
Sbjct: 244  ISLGGGDTTDV--------EDITSAGTAKRDKRKKEKLSYK----------LAEQNKLS- 284

Query: 903  GPLLPSEVKDHLKLLWDNETQLCSLICDIHRERLSMSEKKRSYSMFFIDVLLVPPVKFRP 1082
            G LLPS+VK  L+LLW+NE +LCS I DI  +      KK  +SMFF++ + VPP+KFRP
Sbjct: 285  GSLLPSQVKGILELLWENEARLCSYINDIQDQGFG---KKAGHSMFFLENIFVPPIKFRP 341

Query: 1083 LTKGGDSVTHHPQTVLLSKVLQSNVDLCNALNN--DRSQMESRSLVLQQSVNLLFGNKKS 1256
             TKGGD+V  HPQTVLL+KVLQ N+ L +A  N  D S++ SR + LQQSVN+LF NK +
Sbjct: 342  PTKGGDNVMEHPQTVLLTKVLQCNISLGDAHLNKSDPSKVLSRWMDLQQSVNMLFDNKTA 401

Query: 1257 FGQ-RDNMGMGICQLLEKKEGLFRQKMMGKRVNYSCRSVISPDPYLAVNEIGIPPCFALK 1433
             G+ + ++  GICQLLEKKEG+FRQKMMGKRVN++CRSVISPDPYLAVNEIGIPP FAL+
Sbjct: 402  SGESKRDVATGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALR 461

Query: 1434 LTYPERVTDWNVKKLRNAILNGPDIHPGATEYSDQFSTRKLSNIGKMRTSVSKKFTTSRG 1613
            L+YPERVT WNV KLRNAILNGP+ HPGAT Y+D+ S  KL   GK+ +  S+K  TSRG
Sbjct: 462  LSYPERVTPWNVVKLRNAILNGPESHPGATHYADKVSIVKLPPKGKLLSLTSRKLPTSRG 521

Query: 1614 DTSRGAATKPGRSVEHEHEGKVVSRHLQDGDIVLVNRQPTLHKPGIMAHVVRVLNGEKTI 1793
                      G+  +HE EGKVV RHL+DGD+VLVNRQPTLHKP IMAH+VRVL GEKT+
Sbjct: 522  -----VILHQGKISDHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHIVRVLKGEKTV 576

Query: 1794 RMHYANCSTYNADFDGDEMNVHFPQDEIARAEAFHIVNANNQYIIPTSGDTKRGLIQDHI 1973
            RMHYANCSTYNADFDGDE+NVHFPQDEI+RAEA++IVNANNQY+ PTSGD  R LIQDHI
Sbjct: 577  RMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHI 636

Query: 1974 VSGVLLTKKDTFLSRDEYTHLLYSSGLFAAGRGSFVGKSGQKVSAIVSEDEIELLVPAIL 2153
            VS  LLTKKDTFLS +E+  LLYSSG+  AG GSF GK GQKV    SE E+ L  PAI 
Sbjct: 637  VSAALLTKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFISNSESEMFLFPPAIW 696

Query: 2154 KPEPLWTGKQVITSLLNRMTKGEGLPPFTFEAKCTIDEDIWTSQC--------------- 2288
            KPEPLWTGKQVI++LL  +T+G   PPFT E    I  + + +Q                
Sbjct: 697  KPEPLWTGKQVISALLYYITRGS--PPFTAEKNAKIPSNFFKTQIRKGKRYTEDTSKKKD 754

Query: 2289 -GDDVQFRILKNDFLNGVVDKAQFGKYGMVHTVQELYGSKTAGALLSGLSRLFTVFLQLH 2465
              D+ +  I KND + GVVDKAQFG YGM+HTVQELYGS  AG LLS LSRLFT FLQ+H
Sbjct: 755  KPDEDKLLIYKNDLVRGVVDKAQFGDYGMIHTVQELYGSNVAGNLLSALSRLFTTFLQMH 814

Query: 2466 GFTCGVDDLLLKQNIDIDRRTKLKDANKIVESVYLKFVKGEDDQGKHSEKIDLQSKPVNA 2645
            GFTCGVDDL+L +  D++R  +LK    I +SV+ +F+       K+S+ ID    PV  
Sbjct: 815  GFTCGVDDLMLTEGKDVERMNQLKSCEIIGDSVHREFI-----GVKNSDNID----PVT- 864

Query: 2646 EDENKERKELQVCIEKKVRDHGESTISLLDKMMSSAANELTNAVNTIIFPQKTKSLSEDK 2825
                     LQ+ IEKK+R +GE+ ++ LD+ M+S  N  T                   
Sbjct: 865  ---------LQLNIEKKIRSNGEAALT-LDRKMTSNLNSRT------------------- 895

Query: 2826 SNVESADKSRDNSADKSKDKLAENLKGGFSKPFPKNCFSLMTISGAKGGQVNFXXXXXXX 3005
                            S   L + L  G  KP  KNC SLMT SGAKG  VNF       
Sbjct: 896  ----------------SSGILKKLLSEGILKPSGKNCISLMTTSGAKGSMVNFQQISSHL 939

Query: 3006 XXXXXEGKRVPLMISGKTLPCFPPWDPALRAGGFITDCFLTGLRPQEYYFHCMAGREGLV 3185
                 EGKRVP M+SGKTLPCFPPWD + RAGGFI D FLT L PQEYYFHCMAGREGLV
Sbjct: 940  GQQELEGKRVPRMVSGKTLPCFPPWDCSPRAGGFIIDRFLTALHPQEYYFHCMAGREGLV 999

Query: 3186 DTAVKTSRSGYLQRCLVKNLECLMVGYDRTVRDADGSIVQFCYGEDGVDVHKTSFMAKFD 3365
            DTAVKTSRSGYLQRCL+KNLECL V YD TVRDADGSI+QF YGEDGVDVH+TSF+ +F 
Sbjct: 1000 DTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFITEFG 1059

Query: 3366 TLTSNHSVVLGRLMAQCKDDLEKSKDDHLTFDKCIEKLKEDHLTFDNYIEKLPLKLVEVI 3545
             L++N  +V      Q    L++S                       YI KLP  L    
Sbjct: 1060 ALSTNKELVFSNYCRQ----LDRSSP---------------------YINKLPEAL---- 1090

Query: 3546 YXXXXXXXXXXXXXXQHSSLVEKSRKL--LPKEEMMKLMILKYLSSLAQPGEPVGVIAAQ 3719
                             +    K R L  + + + ++LM  KY+S LAQPGEPVGV+A+Q
Sbjct: 1091 --------------EGKAEKFSKQRNLGSMEQADFLRLMEHKYVSCLAQPGEPVGVLASQ 1136

Query: 3720 SVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKILTPIMSCPLQKGKKGEDA 3899
            SVGEP+TQMTLNTFH AG+ + NVTLGIPRLQEILM A+  I TP M+CPL+  K  +DA
Sbjct: 1137 SVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILMAAARDIKTPFMTCPLRHDKSMKDA 1196

Query: 3900 ERLARSLRKVAVADVIKSMQVSVVPFFVQKHQASAVYKLKVELYPIDMYPKHSNIDLDDC 4079
              LA  L+K+ VAD+IKSM+VSVVP  V   Q  ++YKL ++LY    YP++++I LDD 
Sbjct: 1197 ICLADKLKKITVADIIKSMKVSVVPVTVLGGQVCSIYKLVMKLYKSKQYPEYTDITLDDW 1256

Query: 4080 EKTLKSIFVPELVRAIDSHVAMLSKIAGIVNIVQKGESDLSEGTNEADPSNKLNRK---- 4247
            E+TL+  FV EL  AI +H+ +LSKI+GI       +S+ S  + +A  +   + K    
Sbjct: 1257 EETLRVNFVRELEDAIQNHMTLLSKISGIKKFKTDPQSNYSNSSEDAHSNGSESEKKGQN 1316

Query: 4248 ----GXXXXXXXXXXXXXXXXXXAQKGKLQNSDEMEYEDGMESEYIEGEASGFESEIDQV 4415
                                   AQK KLQ +DE++YEDG E E  +GE S  E E D+ 
Sbjct: 1317 NDDDDEDGGGVEDTEGYEDLGSDAQKRKLQGTDEVDYEDGPEEETHDGELSE-EIEGDED 1375

Query: 4416 ELEDDNSSDDKAPTIETDDXXXXXXXXXXXXXXXXXXXAQDDTCNDLPHNTGGRIFVPPS 4595
              + D + +    T   +                     +              IFV   
Sbjct: 1376 GSDVDANENYNNVTDANNSEGLEKPSKSKTIDEKQNLKREKKKSEPTTKKYDRAIFV--E 1433

Query: 4596 FKEHNFEVHFRSINEPHILLSQIAQKVAKNVYIKKLAKIDRCSVF------------GDT 4739
             K  +FE+HFR   EPHILL+QIAQ+ AK V I+   K+  C                  
Sbjct: 1434 AKGKHFEIHFRFTGEPHILLTQIAQRTAKKVCIQNFGKVGECKAITCKESGVIYYGKDGR 1493

Query: 4740 KTPEIQTSGDSETPEINPIGIETSGVDFHALWDMQDDLDIRLIESNDIHGILKTFGVEAA 4919
            K  EI  S   + P      ++TSGV F   W+++DDLD+R I SN++H +L  +GVEAA
Sbjct: 1494 KRIEISASEKEQIP-----ALQTSGVHFKTFWELEDDLDVRYIYSNNVHAMLNAYGVEAA 1548

Query: 4920 RATIVKELSKVFDLYGIKTDFRHLSLIADFMTQSGKYRPMSRHG-MADSISPFSKMSFET 5096
            R TI++E+  VF  YGI  + RHL+LIADFMT +G YRPM+R G +ADS SPF KM FET
Sbjct: 1549 RETIIREVQNVFKSYGISVNIRHLTLIADFMTHTGSYRPMNRTGSIADSTSPFIKMCFET 1608

Query: 5097 ASTFILNAAYRGEVDNLESPSASICLGQPVKMGTGCFDLMQKVQI 5231
            A  FI+ AAY G+VDNLE+PSA ICLG PVKMGTGC DL+QK++I
Sbjct: 1609 AGNFIVEAAYHGQVDNLETPSARICLGLPVKMGTGCHDLIQKLEI 1653