BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00007754
         (913 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279047.1| PREDICTED: mediator of RNA polymerase II tra...   287   3e-75
ref|XP_004166615.1| PREDICTED: mediator of RNA polymerase II tra...   278   1e-72
ref|XP_004146891.1| PREDICTED: mediator of RNA polymerase II tra...   276   4e-72
ref|NP_197491.2| mediator of RNA polymerase II transcription sub...   271   1e-70
gb|AFK36513.1| unknown [Medicago truncatula]                          270   3e-70

>ref|XP_002279047.1| PREDICTED: mediator of RNA polymerase II transcription subunit 31
           [Vitis vinifera] gi|297737389|emb|CBI26590.3| unnamed
           protein product [Vitis vinifera]
          Length = 198

 Score =  287 bits (734), Expect = 3e-75
 Identities = 138/193 (71%), Positives = 156/193 (80%), Gaps = 2/193 (1%)
 Frame = -2

Query: 882 KDSNEDTETPSTPPNLYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGY 703
           K+S+   +TP++P N+YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGY
Sbjct: 5   KESDSAADTPTSPKNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGY 64

Query: 702 LKYLQYWQRPEYLKFIMYPHCLYFLELLQNANFRNAMAHPGSKELAHRQQFFFWKNYRNN 523
           LKYLQYWQ+PEY+KFIMYPHCL+FLELLQNANFRNAMAHPGSKELAHRQQFF+WKNYRNN
Sbjct: 65  LKYLQYWQQPEYIKFIMYPHCLFFLELLQNANFRNAMAHPGSKELAHRQQFFYWKNYRNN 124

Query: 522 RLKHIVPRPLXXXXXXXXXXXXXSTLVPTSTVSV--APAQALSPMQYGVXXXXXXXPKND 349
           RLKHI+P+PL                 P +T++V  A + ALSPMQYG+        KND
Sbjct: 125 RLKHILPKPLPEPLAGTPAPGPPPQSAPPTTIAVTSAGSPALSPMQYGI-PAGSSLSKND 183

Query: 348 MRNIGGDRRKRKE 310
           MRN   DRRKRK+
Sbjct: 184 MRNSAIDRRKRKK 196


>ref|XP_004166615.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           31-like [Cucumis sativus]
          Length = 206

 Score =  278 bits (711), Expect = 1e-72
 Identities = 140/198 (70%), Positives = 156/198 (78%), Gaps = 7/198 (3%)
 Frame = -2

Query: 870 EDTETPSTPPNLYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYL 691
           E+ + PS+P N+YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLKYL
Sbjct: 10  EEADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYL 69

Query: 690 QYWQRPEYLKFIMYPHCLYFLELLQNANFRNAMAHPGSKELAHRQQFFFWKNYRNNRLKH 511
           QYWQRPEY+KFIMYPHCL+FLELLQN+NFRNAMAHPG+KELAHRQQF+FWKNYRNNRLKH
Sbjct: 70  QYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKH 129

Query: 510 IVPRPLXXXXXXXXXXXXXSTL---VPTSTVSVA---PAQALSPMQYGVXXXXXXXPKND 349
           I+PRPL                    PTS  ++A    A ALSPMQYG+       PKND
Sbjct: 130 ILPRPLPEPAALPPPVTAPPQAAVPAPTSAPNMAASPAAPALSPMQYGI-PPGPGLPKND 188

Query: 348 MRNIGGDRRKRK-ERSVS 298
           M+  G DRRKRK ERS++
Sbjct: 189 MKGAGIDRRKRKHERSMT 206


>ref|XP_004146891.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           31-like [Cucumis sativus]
          Length = 206

 Score =  276 bits (707), Expect = 4e-72
 Identities = 139/198 (70%), Positives = 156/198 (78%), Gaps = 7/198 (3%)
 Frame = -2

Query: 870 EDTETPSTPPNLYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYL 691
           E+ + PS+P N+YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLKYL
Sbjct: 10  EEADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYL 69

Query: 690 QYWQRPEYLKFIMYPHCLYFLELLQNANFRNAMAHPGSKELAHRQQFFFWKNYRNNRLKH 511
           QYWQRPEY+KFIMYPHCL+FLELLQN+NFRNAMAHPG+KELAHRQQF+FWKNYRNNRLKH
Sbjct: 70  QYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKH 129

Query: 510 IVPRPLXXXXXXXXXXXXXSTL---VPTSTVSVA---PAQALSPMQYGVXXXXXXXPKND 349
           I+PRPL                    PTS  ++A    A ALSP+QYG+       PKND
Sbjct: 130 ILPRPLPEPAALPPPVTAPPQAAVPAPTSAPNMAASPAAPALSPIQYGI-PPGPGLPKND 188

Query: 348 MRNIGGDRRKRK-ERSVS 298
           M+  G DRRKRK ERS++
Sbjct: 189 MKGAGIDRRKRKHERSMT 206


>ref|NP_197491.2| mediator of RNA polymerase II transcription subunit 31 [Arabidopsis
           thaliana] gi|38258620|sp|Q8VYB1.1|MED31_ARATH RecName:
           Full=Mediator of RNA polymerase II transcription subunit
           31; AltName: Full=Mediator complex subunit 31; AltName:
           Full=Mediator complex subunit SOH1
           gi|18176433|gb|AAL60043.1| putative SOH1 protein
           [Arabidopsis thaliana] gi|27754239|gb|AAO22573.1|
           putative SOH1 protein [Arabidopsis thaliana]
           gi|332005381|gb|AED92764.1| mediator of RNA polymerase
           II transcription subunit 31 [Arabidopsis thaliana]
          Length = 196

 Score =  271 bits (694), Expect = 1e-70
 Identities = 134/199 (67%), Positives = 151/199 (75%), Gaps = 4/199 (2%)
 Frame = -2

Query: 894 MAFDKDSNED-TETPSTPPNLYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 718
           MA  ++  +D +E PS P N YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRYFEDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 717 AFIGYLKYLQYWQRPEYLKFIMYPHCLYFLELLQNANFRNAMAHPGSKELAHRQQFFFWK 538
           AFIGYLKYLQYWQRPEY+KFIMYPHCLYFLELLQN NFR AMAHP +KELAHRQQF++WK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWK 120

Query: 537 NYRNNRLKHIVPRPLXXXXXXXXXXXXXSTLVPTSTVSVAPAQALSPMQYGVXXXXXXXP 358
           NYRNNRLKHI+PRPL             ++L P  + + A + ALSPMQY          
Sbjct: 121 NYRNNRLKHILPRPLPEPVPPQPPVAPSTSLPPAPSATAALSPALSPMQYN-----NMLS 175

Query: 357 KNDMRNIGG---DRRKRKE 310
           KND RN+G    DRRKRK+
Sbjct: 176 KNDTRNMGATGIDRRKRKK 194


>gb|AFK36513.1| unknown [Medicago truncatula]
          Length = 204

 Score =  270 bits (690), Expect = 3e-70
 Identities = 136/205 (66%), Positives = 147/205 (71%), Gaps = 11/205 (5%)
 Frame = -2

Query: 894 MAFDKDSNEDTETPSTPP-NLYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 718
           MA   +S    +TP +PP ++YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE
Sbjct: 1   MASKTESGSPRDTPPSPPKSIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 60

Query: 717 AFIGYLKYLQYWQRPEYLKFIMYPHCLYFLELLQNANFRNAMAHPGSKELAHRQQFFFWK 538
           AFIGYLKYLQYWQRPEY+KFIMYPHCLYFLELLQNANFRNAMAHP +KEL HRQQF+FWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELTHRQQFYFWK 120

Query: 537 NYRNNRLKHIVPRPLXXXXXXXXXXXXXSTLVPTSTVSVAPA----------QALSPMQY 388
           NYRNNRLKHI+PR L                 P   +   PA          QA SPM Y
Sbjct: 121 NYRNNRLKHILPRSLAEPSAALPAPASTQPQPPVPALPPVPATSVAVTTSSSQAPSPMPY 180

Query: 387 GVXXXXXXXPKNDMRNIGGDRRKRK 313
           G+        KNDMRN   DRRKRK
Sbjct: 181 GI-PPGSGIAKNDMRNTSADRRKRK 204