BLASTX nr result
ID: Coptis21_contig00007718
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00007718
(1070 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002523621.1| ubiquitin-protein ligase, putative [Ricinus ... 307 3e-87
ref|XP_002282881.1| PREDICTED: F-box protein At5g67140 [Vitis vi... 306 2e-86
ref|XP_002306478.1| predicted protein [Populus trichocarpa] gi|2... 294 1e-82
ref|XP_004149695.1| PREDICTED: F-box protein At5g67140-like [Cuc... 287 7e-82
ref|XP_002865025.1| F-box family protein [Arabidopsis lyrata sub... 288 1e-80
>ref|XP_002523621.1| ubiquitin-protein ligase, putative [Ricinus communis]
gi|223537183|gb|EEF38816.1| ubiquitin-protein ligase,
putative [Ricinus communis]
Length = 227
Score = 307 bits (786), Expect(2) = 3e-87
Identities = 147/196 (75%), Positives = 171/196 (87%)
Frame = +1
Query: 220 ASSVCKKWRQGVKQSLARKDKLSFAGWKMDDDSTARIVRYAYNLKELDISRSCWGCQITD 399
ASSVC+KW++GVK+SL R++ LSFAG KMDD STAR+VRYAY+LKELDISRS WGCQITD
Sbjct: 31 ASSVCRKWKEGVKRSLGRRNSLSFAGLKMDDHSTARVVRYAYSLKELDISRSRWGCQITD 90
Query: 400 DGLYKISLAKCVSNLTSISLWGMTGITDRGVIQLVSRAKSLQHLNVGGTFVTDESLYAIA 579
+GLY+ISLAKC+SNLTSISLWGMTGITD+GV+QL+SRA SLQHLNVGGTF+TDESL AIA
Sbjct: 91 NGLYEISLAKCISNLTSISLWGMTGITDKGVVQLMSRANSLQHLNVGGTFITDESLCAIA 150
Query: 580 TSCPHLKAIGLWSCRQVTESGLIALVNNCHKLESINVFGMRVPVDCFIGLLAISPALQIK 759
SCPHLK+IGLWSCR VTE GLI LVN C KLESIN +G RVP+DCF+ LL +SPAL+IK
Sbjct: 151 DSCPHLKSIGLWSCRHVTEIGLIYLVNKCRKLESINAWGTRVPIDCFLCLLTVSPALRIK 210
Query: 760 AGRVHLNVRRIPLLPI 807
G LN+ +LP+
Sbjct: 211 HGGFLLNIGNASMLPV 226
Score = 42.4 bits (98), Expect(2) = 3e-87
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +2
Query: 68 MKREAEIDRLPVDILAHIFFLFSSFTHLA 154
M+ EIDRLP+D+LAHIF L +SFT LA
Sbjct: 1 MEEGTEIDRLPIDLLAHIFVLINSFTDLA 29
>ref|XP_002282881.1| PREDICTED: F-box protein At5g67140 [Vitis vinifera]
gi|296082395|emb|CBI21400.3| unnamed protein product
[Vitis vinifera]
Length = 232
Score = 306 bits (785), Expect(2) = 2e-86
Identities = 145/196 (73%), Positives = 171/196 (87%)
Frame = +1
Query: 220 ASSVCKKWRQGVKQSLARKDKLSFAGWKMDDDSTARIVRYAYNLKELDISRSCWGCQITD 399
ASSVC+KW+QGVKQSL R++ LSFAGW+MDDDS AR++R+AY LKELDISRS WGCQ+TD
Sbjct: 36 ASSVCRKWKQGVKQSLGRRESLSFAGWQMDDDSIARLLRHAYGLKELDISRSRWGCQVTD 95
Query: 400 DGLYKISLAKCVSNLTSISLWGMTGITDRGVIQLVSRAKSLQHLNVGGTFVTDESLYAIA 579
+GLYKISLAKCV+ LTSISLWG+TGITD GV+QL+SRA SLQHLN+GGTF+TDESL+AIA
Sbjct: 96 NGLYKISLAKCVNKLTSISLWGVTGITDSGVVQLISRAISLQHLNIGGTFITDESLFAIA 155
Query: 580 TSCPHLKAIGLWSCRQVTESGLIALVNNCHKLESINVFGMRVPVDCFIGLLAISPALQIK 759
SCP LK I LWSCR VTE+GL+ LV+ C KL+SINV+G RVPVDCF LLAI PALQIK
Sbjct: 156 ESCPCLKTIVLWSCRHVTENGLLVLVSKCRKLQSINVWGTRVPVDCFFALLAIRPALQIK 215
Query: 760 AGRVHLNVRRIPLLPI 807
GR+ LNV R+ + P+
Sbjct: 216 PGRLLLNVERVSMWPV 231
Score = 40.4 bits (93), Expect(2) = 2e-86
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +2
Query: 77 EAEIDRLPVDILAHIFFLFSSFTHLAQ 157
EAEI+RLP+D+LA+IF + +SFT LAQ
Sbjct: 9 EAEIERLPMDLLANIFVMLTSFTDLAQ 35
>ref|XP_002306478.1| predicted protein [Populus trichocarpa] gi|222855927|gb|EEE93474.1|
predicted protein [Populus trichocarpa]
Length = 228
Score = 294 bits (752), Expect(2) = 1e-82
Identities = 143/196 (72%), Positives = 165/196 (84%)
Frame = +1
Query: 220 ASSVCKKWRQGVKQSLARKDKLSFAGWKMDDDSTARIVRYAYNLKELDISRSCWGCQITD 399
ASSVC+KW++GVKQSLA+++ +SFAGWKMDD ST R+VR AYNLKELDISRS W CQITD
Sbjct: 32 ASSVCRKWKEGVKQSLAQRNSMSFAGWKMDDVSTTRLVRLAYNLKELDISRSRWDCQITD 91
Query: 400 DGLYKISLAKCVSNLTSISLWGMTGITDRGVIQLVSRAKSLQHLNVGGTFVTDESLYAIA 579
+GLY+ISLA C+ NLTSISLWGM ITDRGV+QL+SRA SLQHLN+GGTFVTDESL+AIA
Sbjct: 92 NGLYQISLANCIGNLTSISLWGMARITDRGVVQLISRANSLQHLNIGGTFVTDESLFAIA 151
Query: 580 TSCPHLKAIGLWSCRQVTESGLIALVNNCHKLESINVFGMRVPVDCFIGLLAISPALQIK 759
SCP LK+I LWSCR VTE GL+ L N C KLESINV+G RVPV+CFI LL ISP+LQIK
Sbjct: 152 DSCPRLKSIVLWSCRHVTEIGLLNLANKCRKLESINVWGTRVPVNCFIDLLTISPSLQIK 211
Query: 760 AGRVHLNVRRIPLLPI 807
V LNV +LP+
Sbjct: 212 PPGVLLNVGGAAILPV 227
Score = 40.0 bits (92), Expect(2) = 1e-82
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +2
Query: 71 KREAEIDRLPVDILAHIFFLFSSFTHLAQ 157
+ EAEIDRLP+D++A+IF SFT LAQ
Sbjct: 3 REEAEIDRLPIDLVAYIFGFIVSFTDLAQ 31
>ref|XP_004149695.1| PREDICTED: F-box protein At5g67140-like [Cucumis sativus]
gi|449508293|ref|XP_004163274.1| PREDICTED: F-box
protein At5g67140-like [Cucumis sativus]
Length = 235
Score = 287 bits (734), Expect(2) = 7e-82
Identities = 135/181 (74%), Positives = 160/181 (88%)
Frame = +1
Query: 220 ASSVCKKWRQGVKQSLARKDKLSFAGWKMDDDSTARIVRYAYNLKELDISRSCWGCQITD 399
A VC+KW++GVK SL R+ LSFAGWKMDD+STAR++R+AY+L+ELDISRS WGC ITD
Sbjct: 44 ACGVCRKWKEGVKLSLGRRKSLSFAGWKMDDNSTARLIRHAYSLRELDISRSRWGCHITD 103
Query: 400 DGLYKISLAKCVSNLTSISLWGMTGITDRGVIQLVSRAKSLQHLNVGGTFVTDESLYAIA 579
GLY+ISLAKC+ NL SISLWGM GITD+GV+QL+SRA SLQ+LN+GGTFVTD SLYAIA
Sbjct: 104 HGLYEISLAKCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLYAIA 163
Query: 580 TSCPHLKAIGLWSCRQVTESGLIALVNNCHKLESINVFGMRVPVDCFIGLLAISPALQIK 759
SCP+LK I LWSCR VTE+GL+ LV+ C KLESINV+GMRVPVDCFIGL+AISP+LQIK
Sbjct: 164 DSCPNLKTIVLWSCRHVTETGLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIK 223
Query: 760 A 762
+
Sbjct: 224 S 224
Score = 44.7 bits (104), Expect(2) = 7e-82
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = +2
Query: 68 MKREAEIDRLPVDILAHIFFLFSSFTHLAQ 157
M+ E EIDRLP+D+LAHIF + +SFT LAQ
Sbjct: 14 MELEPEIDRLPIDLLAHIFAMITSFTDLAQ 43
>ref|XP_002865025.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
gi|297310860|gb|EFH41284.1| F-box family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 228
Score = 288 bits (738), Expect(2) = 1e-80
Identities = 137/194 (70%), Positives = 159/194 (81%)
Frame = +1
Query: 220 ASSVCKKWRQGVKQSLARKDKLSFAGWKMDDDSTARIVRYAYNLKELDISRSCWGCQITD 399
AS VCKKWR+ V QS+AR++ LSFAGWKMDDDST+R+V AYNLKELDISRS WGC ITD
Sbjct: 31 ASGVCKKWRKAVNQSMARRESLSFAGWKMDDDSTSRLVHLAYNLKELDISRSRWGCHITD 90
Query: 400 DGLYKISLAKCVSNLTSISLWGMTGITDRGVIQLVSRAKSLQHLNVGGTFVTDESLYAIA 579
+GLY+I+ A+CVSNL S+SLWGMT ITD GV+QL+SR SLQHLN+GGTF+TDESL+AIA
Sbjct: 91 NGLYQIASARCVSNLNSVSLWGMTAITDSGVVQLISRTSSLQHLNIGGTFITDESLFAIA 150
Query: 580 TSCPHLKAIGLWSCRQVTESGLIALVNNCHKLESINVFGMRVPVDCFIGLLAISPALQIK 759
C HLK IG+W CR VTE GL+ LVN C KLESIN++G RVPVDCFI LL ISPALQIK
Sbjct: 151 ERCHHLKTIGMWCCRHVTERGLLVLVNKCGKLESINLWGTRVPVDCFIALLTISPALQIK 210
Query: 760 AGRVHLNVRRIPLL 801
+ LN + P L
Sbjct: 211 PMELLLNAQNPPPL 224
Score = 39.3 bits (90), Expect(2) = 1e-80
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 68 MKREAEIDRLPVDILAHIFFLFSSFTHLAQ 157
M EA IDRLP+D+LA+IF L +SFT L Q
Sbjct: 1 MDEEAAIDRLPLDLLAYIFSLVTSFTVLGQ 30