BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00007623
         (1657 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631423.1| PREDICTED: E3 ubiquitin-protein ligase At4g1...   395   e-107
ref|XP_003631422.1| PREDICTED: E3 ubiquitin-protein ligase At4g1...   395   e-107
ref|XP_002509740.1| cleavage and polyadenylation specificity fac...   393   e-107
ref|XP_002271651.1| PREDICTED: E3 ubiquitin-protein ligase At4g1...   392   e-106
ref|XP_003631421.1| PREDICTED: E3 ubiquitin-protein ligase At4g1...   391   e-106

>ref|XP_003631423.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 3
            [Vitis vinifera]
          Length = 392

 Score =  395 bits (1016), Expect = e-107
 Identities = 200/339 (58%), Positives = 228/339 (67%), Gaps = 2/339 (0%)
 Frame = -2

Query: 1368 IMREPSMLVXXXXXXXXXXXQSDWAYSKPVVFLDIIWNXXXXXXXXXXXXXSRNENPIMP 1189
            +MREPSMLV           QSDWAYSKPVV LD+IWN             SR E+P MP
Sbjct: 58   MMREPSMLVRETAAEQLEERQSDWAYSKPVVVLDMIWNFAFVVVAAAVLVLSRRESPSMP 117

Query: 1188 LRLWILGYALQCVLHMVFVCMEYRRRHPPNGPLVQQNLGNXXXXXXXXXXXXXDGRDGAD 1009
            LR WI+GYALQC+LH+V V +EYRRR    G    ++ G                 D + 
Sbjct: 118  LRFWIVGYALQCILHIVCVSVEYRRRRRRAGVFGSEDDGIGSGGSYSSSPQG----DSSQ 173

Query: 1008 FLGERHEGEENTSFAVFTS--ESVAKHLESANTMFSFIWWIIGFYWVSAGGPDLTRDSPQ 835
            ++   +  E ++    F S   SVAKHLESANTMFSFIWWIIGFYWVSAGG  L RDSPQ
Sbjct: 174  YVTLANVDEHHSQTCQFLSLLSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPQ 233

Query: 834  LYWLCIXXXXXXXXXXXXXXXXXXVIGIAVCCCLPCIIAILYAVAEQEGATTEDINQLPK 655
            LYWLCI                  VIGIAVCCCLPCIIAILYAVA+QEGA+ EDI+QL +
Sbjct: 234  LYWLCIIFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAILYAVADQEGASKEDIDQLSR 293

Query: 654  YKFRKIGDFEKVNGEAQGPFGGIMTECDTDTPIEHVLQMENAECCICLSAYDDGAELREL 475
            +KFRK+GD EK++G+ QG  GGIMTEC TD P EHVL  E+AECCICLSAYDDG ELREL
Sbjct: 294  FKFRKVGDIEKIDGDIQGACGGIMTECGTDAPTEHVLSQEDAECCICLSAYDDGVELREL 353

Query: 474  PCRHHFHSACIDKWLYINATCPLCKYNIIKSGNGSREEV 358
            PC HHFH  C+DKWLYINATCPLCKYNI+KS +  REEV
Sbjct: 354  PCGHHFHCTCVDKWLYINATCPLCKYNILKSSSNGREEV 392


>ref|XP_003631422.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 2
            [Vitis vinifera]
          Length = 383

 Score =  395 bits (1016), Expect = e-107
 Identities = 200/337 (59%), Positives = 226/337 (67%)
 Frame = -2

Query: 1368 IMREPSMLVXXXXXXXXXXXQSDWAYSKPVVFLDIIWNXXXXXXXXXXXXXSRNENPIMP 1189
            +MREPSMLV           QSDWAYSKPVV LD+IWN             SR E+P MP
Sbjct: 58   MMREPSMLVRETAAEQLEERQSDWAYSKPVVVLDMIWNFAFVVVAAAVLVLSRRESPSMP 117

Query: 1188 LRLWILGYALQCVLHMVFVCMEYRRRHPPNGPLVQQNLGNXXXXXXXXXXXXXDGRDGAD 1009
            LR WI+GYALQC+LH+V V +EYRRR    G    ++ G               G   + 
Sbjct: 118  LRFWIVGYALQCILHIVCVSVEYRRRRRRAGVFGSEDDG-----------IGSGGSYSSS 166

Query: 1008 FLGERHEGEENTSFAVFTSESVAKHLESANTMFSFIWWIIGFYWVSAGGPDLTRDSPQLY 829
              G+  +     S    +S SVAKHLESANTMFSFIWWIIGFYWVSAGG  L RDSPQLY
Sbjct: 167  PQGDSSQYVTLASLGDESSTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPQLY 226

Query: 828  WLCIXXXXXXXXXXXXXXXXXXVIGIAVCCCLPCIIAILYAVAEQEGATTEDINQLPKYK 649
            WLCI                  VIGIAVCCCLPCIIAILYAVA+QEGA+ EDI+QL ++K
Sbjct: 227  WLCIIFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAILYAVADQEGASKEDIDQLSRFK 286

Query: 648  FRKIGDFEKVNGEAQGPFGGIMTECDTDTPIEHVLQMENAECCICLSAYDDGAELRELPC 469
            FRK+GD EK++G+ QG  GGIMTEC TD P EHVL  E+AECCICLSAYDDG ELRELPC
Sbjct: 287  FRKVGDIEKIDGDIQGACGGIMTECGTDAPTEHVLSQEDAECCICLSAYDDGVELRELPC 346

Query: 468  RHHFHSACIDKWLYINATCPLCKYNIIKSGNGSREEV 358
             HHFH  C+DKWLYINATCPLCKYNI+KS +  REEV
Sbjct: 347  GHHFHCTCVDKWLYINATCPLCKYNILKSSSNGREEV 383


>ref|XP_002509740.1| cleavage and polyadenylation specificity factor, putative [Ricinus
            communis] gi|223549639|gb|EEF51127.1| cleavage and
            polyadenylation specificity factor, putative [Ricinus
            communis]
          Length = 383

 Score =  393 bits (1009), Expect = e-107
 Identities = 201/343 (58%), Positives = 231/343 (67%), Gaps = 6/343 (1%)
 Frame = -2

Query: 1368 IMREPSMLVXXXXXXXXXXXQSDWAYSKPVVFLDIIWNXXXXXXXXXXXXXSRNENPIMP 1189
            +MREPSMLV           QSDWAYSKPVV LDI+WN             SR E+P MP
Sbjct: 58   MMREPSMLVRETAAEQLEERQSDWAYSKPVVILDILWNFAFVAVAIGVLIMSRKEDPSMP 117

Query: 1188 LRLWILGYALQCVLHMVFVCMEYRRRHPPNGPLVQQNLGNXXXXXXXXXXXXXDGRDGAD 1009
            LRLWI+GY LQCVLHMV VC+EYRRR        ++ +G               G DG  
Sbjct: 118  LRLWIVGYGLQCVLHMVCVCVEYRRRRRR-----RRRVG------------FGIGSDGNL 160

Query: 1008 FLGERHEGEENTSFAVFT----SESVAKHLESANTMFSFIWWIIGFYWVSAGGPDLTRDS 841
              G R +  E  + A       + SVAKHLESANTMFSFIWWIIGFYWVSAGG  L+ +S
Sbjct: 161  SSGSRGDSGEYVTLAQLEDHDGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALSHNS 220

Query: 840  PQLYWLCIXXXXXXXXXXXXXXXXXXVIGIAVCCCLPCIIAILYAVAEQEGATTEDINQL 661
            PQLYWLCI                  +IGIAVCCCLPCIIAILYAVA+QEGA+ EDI QL
Sbjct: 221  PQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIEQL 280

Query: 660  PKYKFRKIGDFEKV--NGEAQGPFGGIMTECDTDTPIEHVLQMENAECCICLSAYDDGAE 487
             K+KFR++ + EK+  NG+ QGP GG+MTEC TD+P+EH+L  E+AECCICLSAYDDG E
Sbjct: 281  SKFKFRRVDNDEKLTGNGDEQGPLGGVMTECGTDSPVEHILSEEDAECCICLSAYDDGVE 340

Query: 486  LRELPCRHHFHSACIDKWLYINATCPLCKYNIIKSGNGSREEV 358
            LRELPC HHFH AC+DKWLYINATCPLCKYNI+KS +  REEV
Sbjct: 341  LRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSRDREEV 383


>ref|XP_002271651.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 1
            [Vitis vinifera]
          Length = 382

 Score =  392 bits (1007), Expect = e-106
 Identities = 201/334 (60%), Positives = 225/334 (67%), Gaps = 1/334 (0%)
 Frame = -2

Query: 1368 IMREPSMLVXXXXXXXXXXXQSDWAYSKPVVFLDIIWNXXXXXXXXXXXXXSRNENPIMP 1189
            IMREPSM V           QSDWAYSKP+V LDI+WN             SR+E P  P
Sbjct: 53   IMREPSMRVRETAAEQLEERQSDWAYSKPIVILDIVWNLAFVVVAMTVLVMSRDETPSTP 112

Query: 1188 LRLWILGYALQCVLHMVFVCMEYRRRHPPNGPLVQQNLGNXXXXXXXXXXXXXDGRDGAD 1009
            LRLWI+GY LQCVLHMV VC+EY+RR         +  G              +G D  D
Sbjct: 113  LRLWIIGYGLQCVLHMVCVCVEYKRRRRLVSSGALERSGGWGSGHLSSSSGSDEG-DPID 171

Query: 1008 FLGE-RHEGEENTSFAVFTSESVAKHLESANTMFSFIWWIIGFYWVSAGGPDLTRDSPQL 832
            +  E R+  E+ TS        VAKHLESANTMFSFIWWIIGFYWVSAGG DLTRDSPQL
Sbjct: 172  YRVEVRNRDEDETS--------VAKHLESANTMFSFIWWIIGFYWVSAGGQDLTRDSPQL 223

Query: 831  YWLCIXXXXXXXXXXXXXXXXXXVIGIAVCCCLPCIIAILYAVAEQEGATTEDINQLPKY 652
            YWLCI                  VIGIAVCCCLPCIIAILY VA+QEGAT E+I +LPKY
Sbjct: 224  YWLCIVFLAFDVFFVVICVAVACVIGIAVCCCLPCIIAILYTVADQEGATKEEIERLPKY 283

Query: 651  KFRKIGDFEKVNGEAQGPFGGIMTECDTDTPIEHVLQMENAECCICLSAYDDGAELRELP 472
            KFR+IG+ EK+NGE Q  FGGIMTECDTDTP+EHV+  E+AECCICLSAY+D  ELRELP
Sbjct: 284  KFRRIGESEKLNGEIQESFGGIMTECDTDTPMEHVIPQEDAECCICLSAYEDETELRELP 343

Query: 471  CRHHFHSACIDKWLYINATCPLCKYNIIKSGNGS 370
            CRH FH  CIDKWLYINATCPLCK NI+K+ + S
Sbjct: 344  CRHRFHCTCIDKWLYINATCPLCKLNILKNASQS 377


>ref|XP_003631421.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 1
            [Vitis vinifera]
          Length = 372

 Score =  391 bits (1005), Expect = e-106
 Identities = 199/337 (59%), Positives = 222/337 (65%)
 Frame = -2

Query: 1368 IMREPSMLVXXXXXXXXXXXQSDWAYSKPVVFLDIIWNXXXXXXXXXXXXXSRNENPIMP 1189
            +MREPSMLV           QSDWAYSKPVV LD+IWN             SR E+P MP
Sbjct: 58   MMREPSMLVRETAAEQLEERQSDWAYSKPVVVLDMIWNFAFVVVAAAVLVLSRRESPSMP 117

Query: 1188 LRLWILGYALQCVLHMVFVCMEYRRRHPPNGPLVQQNLGNXXXXXXXXXXXXXDGRDGAD 1009
            LR WI+GYALQC+LH+V V +EYRRR    G    ++                   DG  
Sbjct: 118  LRFWIVGYALQCILHIVCVSVEYRRRRRRAGVFGSED-------------------DGIG 158

Query: 1008 FLGERHEGEENTSFAVFTSESVAKHLESANTMFSFIWWIIGFYWVSAGGPDLTRDSPQLY 829
              G      +  S    T   VAKHLESANTMFSFIWWIIGFYWVSAGG  L RDSPQLY
Sbjct: 159  SGGSYSSSPQGDSSQYVT---VAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPQLY 215

Query: 828  WLCIXXXXXXXXXXXXXXXXXXVIGIAVCCCLPCIIAILYAVAEQEGATTEDINQLPKYK 649
            WLCI                  VIGIAVCCCLPCIIAILYAVA+QEGA+ EDI+QL ++K
Sbjct: 216  WLCIIFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAILYAVADQEGASKEDIDQLSRFK 275

Query: 648  FRKIGDFEKVNGEAQGPFGGIMTECDTDTPIEHVLQMENAECCICLSAYDDGAELRELPC 469
            FRK+GD EK++G+ QG  GGIMTEC TD P EHVL  E+AECCICLSAYDDG ELRELPC
Sbjct: 276  FRKVGDIEKIDGDIQGACGGIMTECGTDAPTEHVLSQEDAECCICLSAYDDGVELRELPC 335

Query: 468  RHHFHSACIDKWLYINATCPLCKYNIIKSGNGSREEV 358
             HHFH  C+DKWLYINATCPLCKYNI+KS +  REEV
Sbjct: 336  GHHFHCTCVDKWLYINATCPLCKYNILKSSSNGREEV 372