BLASTX nr result
ID: Coptis21_contig00007586
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00007586
(540 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containi... 259 2e-67
ref|XP_002314110.1| predicted protein [Populus trichocarpa] gi|2... 240 9e-62
ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containi... 239 1e-61
ref|XP_002525630.1| pentatricopeptide repeat-containing protein,... 231 4e-59
ref|NP_180537.1| pentatricopeptide repeat-containing protein [Ar... 211 6e-53
>ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 259 bits (662), Expect = 2e-67
Identities = 126/179 (70%), Positives = 151/179 (84%)
Frame = -2
Query: 539 FAQAGCLEEALELFQRMQGEGMRPNDVTTVSVISVCAKKLNLKLGRWIHSFIEKNKIEMS 360
F Q GC EEALELFQ M+ + ++PN +T V V+S CAKK + + GRW+HS+IE+N+I S
Sbjct: 212 FVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGES 271
Query: 359 LILSNAMLDMYTKCGSLEEAKILYDKMPEKDVVSLTTMLVGYAQSGEFASARKFFNAMTS 180
L LSNAMLDMYTKCGS+E+AK L+DKMPEKD+VS TTMLVGYA+ GE+ +A+ F+AM +
Sbjct: 272 LTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPN 331
Query: 179 QDITAWNSLISAYEQNGHPKEALALFNELQLSKNAKPDQVTLVSTLSACAQLGAMDLGG 3
QDI AWN+LISAYEQ G PKEAL LF+ELQLSK AKPD+VTLVSTLSACAQLGAMDLGG
Sbjct: 332 QDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGG 390
Score = 99.0 bits (245), Expect = 4e-19
Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 1/179 (0%)
Frame = -2
Query: 539 FAQAGCLEEALELFQRMQ-GEGMRPNDVTTVSVISVCAKKLNLKLGRWIHSFIEKNKIEM 363
+ Q G +EALELF +Q + +P++VT VS +S CA+ + LG WIH +I+K +++
Sbjct: 344 YEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKL 403
Query: 362 SLILSNAMLDMYTKCGSLEEAKILYDKMPEKDVVSLTTMLVGYAQSGEFASARKFFNAMT 183
+ L+ +++DMY KCG L++A +++ + KDV + M+ G A
Sbjct: 404 NCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLA---------------- 447
Query: 182 SQDITAWNSLISAYEQNGHPKEALALFNELQLSKNAKPDQVTLVSTLSACAQLGAMDLG 6
+GH K+A+ALF+++Q K KP+ VT + L AC+ +G ++ G
Sbjct: 448 ---------------MHGHGKDAIALFSKMQEDK-VKPNAVTFTNILCACSHVGLVEEG 490
Score = 70.5 bits (171), Expect = 2e-10
Identities = 34/88 (38%), Positives = 56/88 (63%)
Frame = -2
Query: 269 DVVSLTTMLVGYAQSGEFASARKFFNAMTSQDITAWNSLISAYEQNGHPKEALALFNELQ 90
DV L +++ YA+ GE + F + +D+ +WNS+I+A+ Q G P+EAL LF E++
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229
Query: 89 LSKNAKPDQVTLVSTLSACAQLGAMDLG 6
++N KP+ +T+V LSACA+ + G
Sbjct: 230 -TQNVKPNGITMVGVLSACAKKSDFEFG 256
>ref|XP_002314110.1| predicted protein [Populus trichocarpa] gi|222850518|gb|EEE88065.1|
predicted protein [Populus trichocarpa]
Length = 738
Score = 240 bits (613), Expect = 9e-62
Identities = 115/179 (64%), Positives = 148/179 (82%)
Frame = -2
Query: 539 FAQAGCLEEALELFQRMQGEGMRPNDVTTVSVISVCAKKLNLKLGRWIHSFIEKNKIEMS 360
F Q G EEAL+LF+RM+ E RPN VT V V+S CAK+++L+ GRW +IE+N I+++
Sbjct: 207 FVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDIN 266
Query: 359 LILSNAMLDMYTKCGSLEEAKILYDKMPEKDVVSLTTMLVGYAQSGEFASARKFFNAMTS 180
LILSNAMLDMY KCGSLE+A+ L+DKM EKD+VS TTM+ GYA+ G++ +AR+ F+ M
Sbjct: 267 LILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPR 326
Query: 179 QDITAWNSLISAYEQNGHPKEALALFNELQLSKNAKPDQVTLVSTLSACAQLGAMDLGG 3
+DITAWN+LIS+Y+QNG PKEALA+F ELQL+KN KP++VTL STL+ACAQLGAMDLGG
Sbjct: 327 EDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGG 385
Score = 90.5 bits (223), Expect = 1e-16
Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 1/179 (0%)
Frame = -2
Query: 539 FAQAGCLEEALELFQRMQ-GEGMRPNDVTTVSVISVCAKKLNLKLGRWIHSFIEKNKIEM 363
+ Q G +EAL +F+ +Q + +PN+VT S ++ CA+ + LG WIH +I+K I++
Sbjct: 339 YQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKL 398
Query: 362 SLILSNAMLDMYTKCGSLEEAKILYDKMPEKDVVSLTTMLVGYAQSGEFASARKFFNAMT 183
+ ++ +++DMY+KCG LE+A ++ + +DV + M+ G A
Sbjct: 399 NFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLA---------------- 442
Query: 182 SQDITAWNSLISAYEQNGHPKEALALFNELQLSKNAKPDQVTLVSTLSACAQLGAMDLG 6
+GH + A+ LF+++Q +K KP+ VT + L AC+ G +D G
Sbjct: 443 ---------------MHGHGRAAIDLFSKMQETK-VKPNAVTFTNLLCACSHSGLVDEG 485
Score = 79.7 bits (195), Expect = 3e-13
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 1/171 (0%)
Frame = -2
Query: 515 EALELFQRMQGEGMR-PNDVTTVSVISVCAKKLNLKLGRWIHSFIEKNKIEMSLILSNAM 339
+ L +F +M E R PN T VI + +L G+ IH + K L +SN++
Sbjct: 113 QGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSL 172
Query: 338 LDMYTKCGSLEEAKILYDKMPEKDVVSLTTMLVGYAQSGEFASARKFFNAMTSQDITAWN 159
+ Y+ G L+ A +++ K + +DI +WN
Sbjct: 173 IHFYSSLGDLDSAYLVFSK-------------------------------IVEKDIVSWN 201
Query: 158 SLISAYEQNGHPKEALALFNELQLSKNAKPDQVTLVSTLSACAQLGAMDLG 6
S+IS + Q G P+EAL LF +++ +NA+P++VT+V LSACA+ ++ G
Sbjct: 202 SMISGFVQGGSPEEALQLFKRMKM-ENARPNRVTMVGVLSACAKRIDLEFG 251
>ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED:
pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED:
pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 239 bits (611), Expect = 1e-61
Identities = 118/179 (65%), Positives = 146/179 (81%)
Frame = -2
Query: 539 FAQAGCLEEALELFQRMQGEGMRPNDVTTVSVISVCAKKLNLKLGRWIHSFIEKNKIEMS 360
FAQ C E+ALELF +M+ E + PN VT V V+S CAKKL+L+ GRW+ S+IE+ I++
Sbjct: 202 FAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVD 261
Query: 359 LILSNAMLDMYTKCGSLEEAKILYDKMPEKDVVSLTTMLVGYAQSGEFASARKFFNAMTS 180
L L NAMLDMYTKCGS+++A+ L+D+MPE+DV S T ML GYA+ G++ +AR FNAM
Sbjct: 262 LTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPV 321
Query: 179 QDITAWNSLISAYEQNGHPKEALALFNELQLSKNAKPDQVTLVSTLSACAQLGAMDLGG 3
++I AWN LISAYEQNG PKEALA+FNELQLSK AKPD+VTLVSTLSACAQLGA+DLGG
Sbjct: 322 KEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGG 380
Score = 90.5 bits (223), Expect = 1e-16
Identities = 56/179 (31%), Positives = 93/179 (51%), Gaps = 1/179 (0%)
Frame = -2
Query: 539 FAQAGCLEEALELFQRMQ-GEGMRPNDVTTVSVISVCAKKLNLKLGRWIHSFIEKNKIEM 363
+ Q G +EAL +F +Q + +P++VT VS +S CA+ + LG WIH +I++ I +
Sbjct: 334 YEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVL 393
Query: 362 SLILSNAMLDMYTKCGSLEEAKILYDKMPEKDVVSLTTMLVGYAQSGEFASARKFFNAMT 183
+ L ++++DMY KCGSLE+A ++ + E+DV
Sbjct: 394 NCHLISSLVDMYAKCGSLEKALEVFYSVEERDVY-------------------------- 427
Query: 182 SQDITAWNSLISAYEQNGHPKEALALFNELQLSKNAKPDQVTLVSTLSACAQLGAMDLG 6
W+++I+ +G K A+ LF E+Q +K KP+ VT + L AC+ G +D G
Sbjct: 428 -----VWSAMIAGLGMHGRGKAAIDLFFEMQEAK-VKPNSVTFTNVLCACSHAGLVDEG 480
Score = 65.1 bits (157), Expect = 7e-09
Identities = 41/155 (26%), Positives = 70/155 (45%)
Frame = -2
Query: 470 PNDVTTVSVISVCAKKLNLKLGRWIHSFIEKNKIEMSLILSNAMLDMYTKCGSLEEAKIL 291
PN T VI ++ ++G +H K M L + N+++ Y CG L
Sbjct: 124 PNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDL------ 177
Query: 290 YDKMPEKDVVSLTTMLVGYAQSGEFASARKFFNAMTSQDITAWNSLISAYEQNGHPKEAL 111
+ A + F ++ +D+ +WNS+ISA+ Q P++AL
Sbjct: 178 -------------------------SMAERLFKGISCKDVVSWNSMISAFAQGNCPEDAL 212
Query: 110 ALFNELQLSKNAKPDQVTLVSTLSACAQLGAMDLG 6
LF +++ +N P+ VT+V LSACA+ ++ G
Sbjct: 213 ELFLKME-RENVMPNSVTMVGVLSACAKKLDLEFG 246
>ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223535066|gb|EEF36748.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 765
Score = 231 bits (590), Expect = 4e-59
Identities = 115/179 (64%), Positives = 145/179 (81%)
Frame = -2
Query: 539 FAQAGCLEEALELFQRMQGEGMRPNDVTTVSVISVCAKKLNLKLGRWIHSFIEKNKIEMS 360
F GC ++ALELFQ M+ E +RPNDVT V V+S CAKK++L+ GR + +IE+N I ++
Sbjct: 208 FVLGGCPDKALELFQLMKAENVRPNDVTMVGVLSACAKKMDLEFGRRVCHYIERNGINVN 267
Query: 359 LILSNAMLDMYTKCGSLEEAKILYDKMPEKDVVSLTTMLVGYAQSGEFASARKFFNAMTS 180
L +SNAMLDMY K GSLE+A+ L+DKM EKD+ S TTM+ GYA+ +F +AR F+AM
Sbjct: 268 LTVSNAMLDMYVKNGSLEDARRLFDKMEEKDIFSWTTMIDGYAKRRDFDAARSVFDAMPR 327
Query: 179 QDITAWNSLISAYEQNGHPKEALALFNELQLSKNAKPDQVTLVSTLSACAQLGAMDLGG 3
QDI+AWN LISAYEQ+G PKEALA+F+ELQLSK AKPD+VTLVSTLSACAQLGA+D+GG
Sbjct: 328 QDISAWNVLISAYEQDGKPKEALAIFHELQLSKTAKPDEVTLVSTLSACAQLGAIDIGG 386
Score = 85.9 bits (211), Expect = 4e-15
Identities = 50/179 (27%), Positives = 93/179 (51%), Gaps = 1/179 (0%)
Frame = -2
Query: 539 FAQAGCLEEALELFQRMQ-GEGMRPNDVTTVSVISVCAKKLNLKLGRWIHSFIEKNKIEM 363
+ Q G +EAL +F +Q + +P++VT VS +S CA+ + +G WIH +I+K I++
Sbjct: 340 YEQDGKPKEALAIFHELQLSKTAKPDEVTLVSTLSACAQLGAIDIGGWIHVYIKKQDIKL 399
Query: 362 SLILSNAMLDMYTKCGSLEEAKILYDKMPEKDVVSLTTMLVGYAQSGEFASARKFFNAMT 183
+ L+ +++DMY+KCG +E+A ++ + +DV
Sbjct: 400 NCHLTTSLIDMYSKCGEVEKALDIFYSVDRRDVF-------------------------- 433
Query: 182 SQDITAWNSLISAYEQNGHPKEALALFNELQLSKNAKPDQVTLVSTLSACAQLGAMDLG 6
W+++I+ +G + A+ LF E+Q +K +P+ VT + L AC+ G ++ G
Sbjct: 434 -----VWSAMIAGLAMHGRGRAAIDLFFEMQETK-VRPNAVTFTNLLCACSHTGLVNEG 486
Score = 63.9 bits (154), Expect = 1e-08
Identities = 44/155 (28%), Positives = 68/155 (43%)
Frame = -2
Query: 470 PNDVTTVSVISVCAKKLNLKLGRWIHSFIEKNKIEMSLILSNAMLDMYTKCGSLEEAKIL 291
PN T VI A +L + IH K + L + N+++ Y CG L+ A +
Sbjct: 130 PNKFTFPFVIKAAAGVASLPFSQAIHGMAIKASLGSDLFILNSLIHCYASCGDLDSAYSV 189
Query: 290 YDKMPEKDVVSLTTMLVGYAQSGEFASARKFFNAMTSQDITAWNSLISAYEQNGHPKEAL 111
+ K+ EKDVVS +M+ G+ G P +AL
Sbjct: 190 FVKIEEKDVVSWNSMIKGFV-------------------------------LGGCPDKAL 218
Query: 110 ALFNELQLSKNAKPDQVTLVSTLSACAQLGAMDLG 6
LF +L ++N +P+ VT+V LSACA+ ++ G
Sbjct: 219 ELF-QLMKAENVRPNDVTMVGVLSACAKKMDLEFG 252
>ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein
[Arabidopsis thaliana] gi|330253207|gb|AEC08301.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 738
Score = 211 bits (537), Expect = 6e-53
Identities = 104/178 (58%), Positives = 140/178 (78%)
Frame = -2
Query: 539 FAQAGCLEEALELFQRMQGEGMRPNDVTTVSVISVCAKKLNLKLGRWIHSFIEKNKIEMS 360
F Q G ++ALELF++M+ E ++ + VT V V+S CAK NL+ GR + S+IE+N++ ++
Sbjct: 207 FVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVN 266
Query: 359 LILSNAMLDMYTKCGSLEEAKILYDKMPEKDVVSLTTMLVGYAQSGEFASARKFFNAMTS 180
L L+NAMLDMYTKCGS+E+AK L+D M EKD V+ TTML GYA S ++ +AR+ N+M
Sbjct: 267 LTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQ 326
Query: 179 QDITAWNSLISAYEQNGHPKEALALFNELQLSKNAKPDQVTLVSTLSACAQLGAMDLG 6
+DI AWN+LISAYEQNG P EAL +F+ELQL KN K +Q+TLVSTLSACAQ+GA++LG
Sbjct: 327 KDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG 384
Score = 91.7 bits (226), Expect = 6e-17
Identities = 53/177 (29%), Positives = 93/177 (52%), Gaps = 1/177 (0%)
Frame = -2
Query: 539 FAQAGCLEEALELFQRMQ-GEGMRPNDVTTVSVISVCAKKLNLKLGRWIHSFIEKNKIEM 363
+ Q G EAL +F +Q + M+ N +T VS +S CA+ L+LGRWIHS+I+K+ I M
Sbjct: 339 YEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRM 398
Query: 362 SLILSNAMLDMYTKCGSLEEAKILYDKMPEKDVVSLTTMLVGYAQSGEFASARKFFNAMT 183
+ +++A++ MY+KCG LE+++ +++ + ++DV
Sbjct: 399 NFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVF-------------------------- 432
Query: 182 SQDITAWNSLISAYEQNGHPKEALALFNELQLSKNAKPDQVTLVSTLSACAQLGAMD 12
W+++I +G EA+ +F ++Q N KP+ VT + AC+ G +D
Sbjct: 433 -----VWSAMIGGLAMHGCGNEAVDMFYKMQ-EANVKPNGVTFTNVFCACSHTGLVD 483
Score = 73.2 bits (178), Expect = 2e-11
Identities = 42/155 (27%), Positives = 74/155 (47%)
Frame = -2
Query: 470 PNDVTTVSVISVCAKKLNLKLGRWIHSFIEKNKIEMSLILSNAMLDMYTKCGSLEEAKIL 291
PN T +I A+ +L LG+ +H K+ + + ++N+++ Y CG L+
Sbjct: 129 PNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLD----- 183
Query: 290 YDKMPEKDVVSLTTMLVGYAQSGEFASARKFFNAMTSQDITAWNSLISAYEQNGHPKEAL 111
SA K F + +D+ +WNS+I+ + Q G P +AL
Sbjct: 184 --------------------------SACKVFTTIKEKDVVSWNSMINGFVQKGSPDKAL 217
Query: 110 ALFNELQLSKNAKPDQVTLVSTLSACAQLGAMDLG 6
LF +++ S++ K VT+V LSACA++ ++ G
Sbjct: 218 ELFKKME-SEDVKASHVTMVGVLSACAKIRNLEFG 251