BLASTX nr result
ID: Coptis21_contig00007479
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00007479
(611 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI29860.3| unnamed protein product [Vitis vinifera] 276 2e-72
ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containi... 265 6e-69
ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containi... 248 6e-64
ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containi... 248 6e-64
ref|XP_002529617.1| pentatricopeptide repeat-containing protein,... 243 2e-62
>emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 276 bits (707), Expect = 2e-72
Identities = 128/201 (63%), Positives = 169/201 (84%)
Frame = +2
Query: 5 QQQQFLASLLKKCTNMKYLRQIHSHVLKSPLPPHLKTHLLCQIVGFCALSPSGDINHART 184
++++ +A L++KC +M+ LRQIH+ +L +P + LC+I+GFCALSP GDI++AR
Sbjct: 55 EEEERIALLIRKCRSMRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARK 114
Query: 185 VFTQIQNPNIFSYNSMIRGCSQIQNPSREPVSLYHKLIKTGYPNPNSYTLAFVLKACAVV 364
+F+QIQ PNIFS+NSMIRGCSQ Q PS+EPV L+ K+++ GYPNPN++T+AFVLKAC++V
Sbjct: 115 LFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIV 174
Query: 365 LGFKEGWQIHSHVLRFGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMI 544
+EG Q+H++VL+ G GSSPFV+TALVNFYAKCE+I LA K+FDEI +RNL+ WSTMI
Sbjct: 175 SALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMI 234
Query: 545 SGYARIGLVNEALGLFREMQK 607
SGYARIGLVNEALGLFR+MQK
Sbjct: 235 SGYARIGLVNEALGLFRDMQK 255
Score = 86.7 bits (213), Expect = 3e-15
Identities = 66/201 (32%), Positives = 109/201 (54%), Gaps = 5/201 (2%)
Frame = +2
Query: 20 LASLLKKCTNMKYL---RQIHSHVLKSPL--PPHLKTHLLCQIVGFCALSPSGDINHART 184
+A +LK C+ + L +Q+H++VLKS P ++T L V F A DI A
Sbjct: 164 MAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETAL----VNFYAKCE--DIVLASK 217
Query: 185 VFTQIQNPNIFSYNSMIRGCSQIQNPSREPVSLYHKLIKTGYPNPNSYTLAFVLKACAVV 364
VF +I + N+ ++++MI G ++I E + L+ + K G P+ T+ V+ ACA
Sbjct: 218 VFDEITDRNLVAWSTMISGYARI-GLVNEALGLFRDMQKAGVV-PDEVTMVSVISACAAS 275
Query: 365 LGFKEGWQIHSHVLRFGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMI 544
G +H+++ + + + + TALVN YAKC I A+++FD +P ++ WS+MI
Sbjct: 276 GALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMI 335
Query: 545 SGYARIGLVNEALGLFREMQK 607
G A GL +AL F M++
Sbjct: 336 VGLAINGLAEDALEEFFRMEE 356
>ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 265 bits (676), Expect = 6e-69
Identities = 124/186 (66%), Positives = 157/186 (84%)
Frame = +2
Query: 50 MKYLRQIHSHVLKSPLPPHLKTHLLCQIVGFCALSPSGDINHARTVFTQIQNPNIFSYNS 229
M+ LRQIH+ +L +P + LC+I+GFCALSP GDI++AR +F+QIQ PNIFS+NS
Sbjct: 1 MRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNS 60
Query: 230 MIRGCSQIQNPSREPVSLYHKLIKTGYPNPNSYTLAFVLKACAVVLGFKEGWQIHSHVLR 409
MIRGCSQ Q PS+EPV L+ K+++ GYPNPN++T+AFVLKAC++V +EG Q+H++VL+
Sbjct: 61 MIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLK 120
Query: 410 FGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMISGYARIGLVNEALGL 589
G GSSPFV+TALVNFYAKCE+I LA K+FDEI +RNL+ WSTMISGYARIGLVNEALGL
Sbjct: 121 SGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGL 180
Query: 590 FREMQK 607
FR+MQK
Sbjct: 181 FRDMQK 186
Score = 86.7 bits (213), Expect = 3e-15
Identities = 66/201 (32%), Positives = 109/201 (54%), Gaps = 5/201 (2%)
Frame = +2
Query: 20 LASLLKKCTNMKYL---RQIHSHVLKSPL--PPHLKTHLLCQIVGFCALSPSGDINHART 184
+A +LK C+ + L +Q+H++VLKS P ++T L V F A DI A
Sbjct: 95 MAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETAL----VNFYAKCE--DIVLASK 148
Query: 185 VFTQIQNPNIFSYNSMIRGCSQIQNPSREPVSLYHKLIKTGYPNPNSYTLAFVLKACAVV 364
VF +I + N+ ++++MI G ++I E + L+ + K G P+ T+ V+ ACA
Sbjct: 149 VFDEITDRNLVAWSTMISGYARI-GLVNEALGLFRDMQKAGVV-PDEVTMVSVISACAAS 206
Query: 365 LGFKEGWQIHSHVLRFGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMI 544
G +H+++ + + + + TALVN YAKC I A+++FD +P ++ WS+MI
Sbjct: 207 GALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMI 266
Query: 545 SGYARIGLVNEALGLFREMQK 607
G A GL +AL F M++
Sbjct: 267 VGLAINGLAEDALEEFFRMEE 287
>ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 376
Score = 248 bits (633), Expect = 6e-64
Identities = 119/186 (63%), Positives = 149/186 (80%)
Frame = +2
Query: 50 MKYLRQIHSHVLKSPLPPHLKTHLLCQIVGFCALSPSGDINHARTVFTQIQNPNIFSYNS 229
M+ LRQ+H+H+L PLP L +IV FCALSP G+IN+AR+VF QI +PNIFS+NS
Sbjct: 1 MRVLRQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNS 60
Query: 230 MIRGCSQIQNPSREPVSLYHKLIKTGYPNPNSYTLAFVLKACAVVLGFKEGWQIHSHVLR 409
+I+G SQI S+EP+ L+ KL +TGYP PNS+TLAFVLKACA+V F EG Q+HSHVL+
Sbjct: 61 LIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLK 120
Query: 410 FGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMISGYARIGLVNEALGL 589
G GSS FVQT+LVNFY KCEEIG ARK+F+E+P RNL+ W+ MISG+AR+G V+EA+ L
Sbjct: 121 DGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMEL 180
Query: 590 FREMQK 607
FREMQK
Sbjct: 181 FREMQK 186
Score = 90.1 bits (222), Expect = 3e-16
Identities = 62/198 (31%), Positives = 104/198 (52%), Gaps = 4/198 (2%)
Frame = +2
Query: 20 LASLLKKCTNMKYLR---QIHSHVLKSPLPPHLKTHL-LCQIVGFCALSPSGDINHARTV 187
LA +LK C + Q+HSHVLK L L G C +I AR V
Sbjct: 95 LAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCE-----EIGFARKV 149
Query: 188 FTQIQNPNIFSYNSMIRGCSQIQNPSREPVSLYHKLIKTGYPNPNSYTLAFVLKACAVVL 367
F ++ N+ ++ +MI G +++ E + L+ ++ K G P++ TL V+ ACAV
Sbjct: 150 FEEMPVRNLVAWTAMISGHARV-GAVDEAMELFREMQKAGI-QPDAMTLVSVVSACAVAG 207
Query: 368 GFKEGWQIHSHVLRFGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMIS 547
G +H+++ ++ + + + TALV+ YAKC I A+++F +P ++ WS+MI
Sbjct: 208 ALDIGCWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIM 267
Query: 548 GYARIGLVNEALGLFREM 601
G+A GL +A+ F++M
Sbjct: 268 GFAYHGLAQDAIDAFQQM 285
>ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 248 bits (633), Expect = 6e-64
Identities = 119/186 (63%), Positives = 149/186 (80%)
Frame = +2
Query: 50 MKYLRQIHSHVLKSPLPPHLKTHLLCQIVGFCALSPSGDINHARTVFTQIQNPNIFSYNS 229
M+ LRQ+H+H+L PLP L +IV FCALSP G+IN+AR+VF QI +PNIFS+NS
Sbjct: 1 MRVLRQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNS 60
Query: 230 MIRGCSQIQNPSREPVSLYHKLIKTGYPNPNSYTLAFVLKACAVVLGFKEGWQIHSHVLR 409
+I+G SQI S+EP+ L+ KL +TGYP PNS+TLAFVLKACA+V F EG Q+HSHVL+
Sbjct: 61 LIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLK 120
Query: 410 FGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMISGYARIGLVNEALGL 589
G GSS FVQT+LVNFY KCEEIG ARK+F+E+P RNL+ W+ MISG+AR+G V+EA+ L
Sbjct: 121 DGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMEL 180
Query: 590 FREMQK 607
FREMQK
Sbjct: 181 FREMQK 186
Score = 91.7 bits (226), Expect = 1e-16
Identities = 62/198 (31%), Positives = 105/198 (53%), Gaps = 4/198 (2%)
Frame = +2
Query: 20 LASLLKKCTNMKYLR---QIHSHVLKSPLPPHLKTHL-LCQIVGFCALSPSGDINHARTV 187
LA +LK C + Q+HSHVLK L L G C +I AR V
Sbjct: 95 LAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCE-----EIGFARKV 149
Query: 188 FTQIQNPNIFSYNSMIRGCSQIQNPSREPVSLYHKLIKTGYPNPNSYTLAFVLKACAVVL 367
F ++ N+ ++ +MI G +++ E + L+ ++ K G P++ TL V+ ACAV
Sbjct: 150 FEEMPVRNLVAWTAMISGHARV-GAVDEAMELFREMQKAGI-QPDAMTLVSVVSACAVAG 207
Query: 368 GFKEGWQIHSHVLRFGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMIS 547
G+ +H+++ ++ + + + TALV+ YAKC I A+++F +P ++ WS+MI
Sbjct: 208 ALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIM 267
Query: 548 GYARIGLVNEALGLFREM 601
G+A GL +A+ F++M
Sbjct: 268 GFAYHGLAQDAIDAFQQM 285
>ref|XP_002529617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223530902|gb|EEF32762.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 438
Score = 243 bits (620), Expect = 2e-62
Identities = 112/202 (55%), Positives = 156/202 (77%)
Frame = +2
Query: 5 QQQQFLASLLKKCTNMKYLRQIHSHVLKSPLPPHLKTHLLCQIVGFCALSPSGDINHART 184
++++ +ASL++KC N+ +LRQIH+ +L LP + LL +I+ F ALSP GD+N+AR
Sbjct: 126 EEEKQIASLIQKCPNLHFLRQIHARILTRLLPIPTISFLLSKILSFSALSPLGDLNYARK 185
Query: 185 VFTQIQNPNIFSYNSMIRGCSQIQNPSREPVSLYHKLIKTGYPNPNSYTLAFVLKACAVV 364
+F QI NP IF YN++IRGCS +NPSREP LY ++ G+P N++T+AFVLKACA +
Sbjct: 186 IFAQIPNPGIFPYNTIIRGCSYAKNPSREPYFLYKSMVTRGFPRANTFTMAFVLKACASI 245
Query: 365 LGFKEGWQIHSHVLRFGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMI 544
+ F+EG QIH+ +LR G +P+VQ++LV+ Y KCEEI LA+++FDEI ERNL+ WS MI
Sbjct: 246 MAFEEGRQIHARILRSGFSLNPYVQSSLVSLYGKCEEIRLAKQVFDEITERNLVCWSAMI 305
Query: 545 SGYARIGLVNEALGLFREMQKV 610
SGYAR+G+VNEAL +FREMQ+V
Sbjct: 306 SGYARVGMVNEALSMFREMQEV 327
Score = 91.3 bits (225), Expect = 1e-16
Identities = 62/201 (30%), Positives = 112/201 (55%), Gaps = 5/201 (2%)
Frame = +2
Query: 20 LASLLKKCTNMKYL---RQIHSHVLKS--PLPPHLKTHLLCQIVGFCALSPSGDINHART 184
+A +LK C ++ RQIH+ +L+S L P++++ L+ + G C +I A+
Sbjct: 235 MAFVLKACASIMAFEEGRQIHARILRSGFSLNPYVQSSLV-SLYGKCE-----EIRLAKQ 288
Query: 185 VFTQIQNPNIFSYNSMIRGCSQIQNPSREPVSLYHKLIKTGYPNPNSYTLAFVLKACAVV 364
VF +I N+ +++MI G +++ E +S++ ++ + G P+ +L V+ ACA+
Sbjct: 289 VFDEITERNLVCWSAMISGYARV-GMVNEALSMFREMQEVGI-EPDEVSLVGVISACAMA 346
Query: 365 LGFKEGWQIHSHVLRFGLGSSPFVQTALVNFYAKCEEIGLARKLFDEIPERNLIGWSTMI 544
G IH+++ + + + TALVN YAKC I A+++FD +P ++ WS+MI
Sbjct: 347 GALDIGRWIHAYIKKRMIHIDLELNTALVNMYAKCGCIEKAKEIFDYMPVKDSKAWSSMI 406
Query: 545 SGYARIGLVNEALGLFREMQK 607
G A GL +AL +F M++
Sbjct: 407 VGLAIHGLAEDALEMFSRMEE 427