BLASTX nr result

ID: Coptis21_contig00007385 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00007385
         (678 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279868.1| PREDICTED: uncharacterized protein LOC100263...   164   1e-38
ref|XP_002527419.1| RNA binding protein, putative [Ricinus commu...   157   1e-36
ref|XP_002327534.1| predicted protein [Populus trichocarpa] gi|2...   157   1e-36
gb|AFK36557.1| unknown [Medicago truncatula]                          155   9e-36
ref|NP_001242824.1| uncharacterized protein LOC100810989 [Glycin...   144   2e-32

>ref|XP_002279868.1| PREDICTED: uncharacterized protein LOC100263499 [Vitis vinifera]
           gi|297743102|emb|CBI35969.3| unnamed protein product
           [Vitis vinifera]
          Length = 272

 Score =  164 bits (416), Expect = 1e-38
 Identities = 81/125 (64%), Positives = 95/125 (76%)
 Frame = -3

Query: 676 PNSSNKGEISTAESADKAVDHGNAGVTENEQSEKAVAGDLPPCSTLFIANLGPNCTEEEL 497
           P+S N  ++ TA+S + AVD  +     NEQ EK     LPPCSTLFIANLGP CTE+EL
Sbjct: 147 PDSGNNDDLVTAKSGEMAVDPDSTLTAVNEQPEKTTDAGLPPCSTLFIANLGPTCTEDEL 206

Query: 496 KGALSQYTGFHIVKMRANRGMPVAFADFEEVDQATEAMHGLQDSLLPSSDRGGMHLEYAR 317
           K  LSQY GF+++KMRA  GMPVAFADFEE++QA +AM  LQ S+L SSDRGGMHLEYAR
Sbjct: 207 KQVLSQYPGFNVLKMRAKGGMPVAFADFEEIEQANKAMDALQGSMLASSDRGGMHLEYAR 266

Query: 316 SKMRK 302
           SKMRK
Sbjct: 267 SKMRK 271


>ref|XP_002527419.1| RNA binding protein, putative [Ricinus communis]
           gi|223533229|gb|EEF34985.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 206

 Score =  157 bits (398), Expect = 1e-36
 Identities = 80/124 (64%), Positives = 98/124 (79%)
 Frame = -3

Query: 673 NSSNKGEISTAESADKAVDHGNAGVTENEQSEKAVAGDLPPCSTLFIANLGPNCTEEELK 494
           +S+N+G++   +S + A D  NA V  NE SEK   G + PCSTLFIANLGPNCTE+EL+
Sbjct: 84  DSANQGDLMNVKS-EPAGDPDNASVLANE-SEKTAEGGVHPCSTLFIANLGPNCTEDELR 141

Query: 493 GALSQYTGFHIVKMRANRGMPVAFADFEEVDQATEAMHGLQDSLLPSSDRGGMHLEYARS 314
             LSQY GF+++KMRA  GMPVAFADFEE++QA +AM  LQ +LLPSSDRGGMH+EYARS
Sbjct: 142 HTLSQYPGFNVLKMRAKGGMPVAFADFEEIEQAIKAMEDLQGTLLPSSDRGGMHIEYARS 201

Query: 313 KMRK 302
           KMRK
Sbjct: 202 KMRK 205


>ref|XP_002327534.1| predicted protein [Populus trichocarpa] gi|222836088|gb|EEE74509.1|
           predicted protein [Populus trichocarpa]
          Length = 281

 Score =  157 bits (398), Expect = 1e-36
 Identities = 77/124 (62%), Positives = 96/124 (77%)
 Frame = -3

Query: 673 NSSNKGEISTAESADKAVDHGNAGVTENEQSEKAVAGDLPPCSTLFIANLGPNCTEEELK 494
           +++ +G+   A+S + A D  NA V  NE  E+   G + PCSTLFIANLGPNCTE+ELK
Sbjct: 158 DTAYQGDSENAKS-EAASDPDNAAVAVNEIGERTAEGGVRPCSTLFIANLGPNCTEDELK 216

Query: 493 GALSQYTGFHIVKMRANRGMPVAFADFEEVDQATEAMHGLQDSLLPSSDRGGMHLEYARS 314
             LSQY GFH++K+RA  GMPVAFADFEE++QAT+ M  LQ++ LPSSDRGGMH+EYARS
Sbjct: 217 QVLSQYPGFHVLKIRAKGGMPVAFADFEEIEQATKVMENLQETTLPSSDRGGMHIEYARS 276

Query: 313 KMRK 302
           KMRK
Sbjct: 277 KMRK 280


>gb|AFK36557.1| unknown [Medicago truncatula]
          Length = 268

 Score =  155 bits (391), Expect = 9e-36
 Identities = 80/124 (64%), Positives = 91/124 (73%)
 Frame = -3

Query: 673 NSSNKGEISTAESADKAVDHGNAGVTENEQSEKAVAGDLPPCSTLFIANLGPNCTEEELK 494
           N SN G+I+TA+S D  V   N       Q  K   GD  PCSTLFIANLGPNCTE+ELK
Sbjct: 144 NGSNHGDIATAQSGDAVVGSDNHVPVARAQHGKG-GGDGGPCSTLFIANLGPNCTEDELK 202

Query: 493 GALSQYTGFHIVKMRANRGMPVAFADFEEVDQATEAMHGLQDSLLPSSDRGGMHLEYARS 314
            ALS Y GF++VKMR+  GMPVAFADFEE+DQA + M  LQ S LPSSDRGGMH+EYARS
Sbjct: 203 QALSVYAGFNLVKMRSRGGMPVAFADFEEIDQAVKVMEELQGSSLPSSDRGGMHIEYARS 262

Query: 313 KMRK 302
           +MRK
Sbjct: 263 RMRK 266


>ref|NP_001242824.1| uncharacterized protein LOC100810989 [Glycine max]
           gi|255636681|gb|ACU18677.1| unknown [Glycine max]
          Length = 265

 Score =  144 bits (363), Expect = 2e-32
 Identities = 78/124 (62%), Positives = 89/124 (71%)
 Frame = -3

Query: 673 NSSNKGEISTAESADKAVDHGNAGVTENEQSEKAVAGDLPPCSTLFIANLGPNCTEEELK 494
           +  N+G I+   S + AV   NA     EQ  K  AG L  CSTLFIANLGPNCTE+ELK
Sbjct: 145 SGDNQGNIAIMTSDETAVGSDNA--VSVEQHGKGSAGGL--CSTLFIANLGPNCTEDELK 200

Query: 493 GALSQYTGFHIVKMRANRGMPVAFADFEEVDQATEAMHGLQDSLLPSSDRGGMHLEYARS 314
            A S YTGF++VKMR+  GMPVAF DFEE DQA + +  LQ SLLPSSDRGGMH+EYARS
Sbjct: 201 QAFSVYTGFNMVKMRSRGGMPVAFVDFEETDQAAKVVEELQGSLLPSSDRGGMHIEYARS 260

Query: 313 KMRK 302
           KMRK
Sbjct: 261 KMRK 264


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