BLASTX nr result

ID: Coptis21_contig00007368 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00007368
         (578 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308217.1| predicted protein [Populus trichocarpa] gi|2...   158   7e-55
ref|XP_002280330.1| PREDICTED: LIMR family protein At5g01460 [Vi...   157   2e-54
ref|XP_002323579.1| predicted protein [Populus trichocarpa] gi|2...   158   8e-54
ref|XP_003516971.1| PREDICTED: LOW QUALITY PROTEIN: LIMR family ...   158   1e-53
ref|XP_002528095.1| conserved hypothetical protein [Ricinus comm...   157   2e-53

>ref|XP_002308217.1| predicted protein [Populus trichocarpa] gi|222854193|gb|EEE91740.1|
           predicted protein [Populus trichocarpa]
          Length = 509

 Score =  158 bits (400), Expect(2) = 7e-55
 Identities = 73/80 (91%), Positives = 77/80 (96%)
 Frame = +1

Query: 337 PADVANRQACRHAIYNGACNLTLPMKSLWLVIYIVDAVLVFFVIPFAMFYYEGDQDKSVG 516
           PADVANRQACRHAIYNGACNLTLPMK LW+ +YIVDAVLVFF+IPFAMFYYEGDQDKSV 
Sbjct: 61  PADVANRQACRHAIYNGACNLTLPMKDLWIAVYIVDAVLVFFIIPFAMFYYEGDQDKSVA 120

Query: 517 KRIKSALLWVVTTAIVCGLV 576
           KRIKSALLWV+TTAIVCGLV
Sbjct: 121 KRIKSALLWVITTAIVCGLV 140



 Score = 81.3 bits (199), Expect(2) = 7e-55
 Identities = 40/59 (67%), Positives = 42/59 (71%)
 Frame = +3

Query: 90  MGDFNXXXXXXXXXXXXXXXXFNIYLLVNYQHPDDANQSYFPKFVVVFGLSVAAISILM 266
           MGDFN                FN+YLLVNYQHPDD NQ+YFPKFVVVFGLSVAAISILM
Sbjct: 1   MGDFNLALVIVAIVVCIIVLLFNVYLLVNYQHPDDKNQAYFPKFVVVFGLSVAAISILM 59


>ref|XP_002280330.1| PREDICTED: LIMR family protein At5g01460 [Vitis vinifera]
           gi|297740207|emb|CBI30389.3| unnamed protein product
           [Vitis vinifera]
          Length = 509

 Score =  157 bits (397), Expect(2) = 2e-54
 Identities = 74/80 (92%), Positives = 76/80 (95%)
 Frame = +1

Query: 337 PADVANRQACRHAIYNGACNLTLPMKSLWLVIYIVDAVLVFFVIPFAMFYYEGDQDKSVG 516
           PADVANRQACRHAIYNGACN TLPM+ LWL IYIVDAVLVFFVIPFAMFYYEGDQDKSVG
Sbjct: 61  PADVANRQACRHAIYNGACNFTLPMRDLWLAIYIVDAVLVFFVIPFAMFYYEGDQDKSVG 120

Query: 517 KRIKSALLWVVTTAIVCGLV 576
           KRIKSALLWV+TTAIVC LV
Sbjct: 121 KRIKSALLWVITTAIVCALV 140



 Score = 80.9 bits (198), Expect(2) = 2e-54
 Identities = 40/59 (67%), Positives = 42/59 (71%)
 Frame = +3

Query: 90  MGDFNXXXXXXXXXXXXXXXXFNIYLLVNYQHPDDANQSYFPKFVVVFGLSVAAISILM 266
           MGDFN                FNIYLLVNYQHPDDANQ+YFPKFVVV GLS+AAISILM
Sbjct: 1   MGDFNLALVIVAIVVCVLVFLFNIYLLVNYQHPDDANQAYFPKFVVVLGLSIAAISILM 59


>ref|XP_002323579.1| predicted protein [Populus trichocarpa] gi|222868209|gb|EEF05340.1|
           predicted protein [Populus trichocarpa]
          Length = 509

 Score =  158 bits (400), Expect(2) = 8e-54
 Identities = 73/80 (91%), Positives = 77/80 (96%)
 Frame = +1

Query: 337 PADVANRQACRHAIYNGACNLTLPMKSLWLVIYIVDAVLVFFVIPFAMFYYEGDQDKSVG 516
           PADVANRQACRHAIYNGACNLTLPMK LW+ +YIVDAVLVFF+IPFAMFYYEGDQDKSV 
Sbjct: 61  PADVANRQACRHAIYNGACNLTLPMKDLWIAVYIVDAVLVFFIIPFAMFYYEGDQDKSVA 120

Query: 517 KRIKSALLWVVTTAIVCGLV 576
           KRIKSALLWV+TTAIVCGLV
Sbjct: 121 KRIKSALLWVITTAIVCGLV 140



 Score = 77.8 bits (190), Expect(2) = 8e-54
 Identities = 39/59 (66%), Positives = 40/59 (67%)
 Frame = +3

Query: 90  MGDFNXXXXXXXXXXXXXXXXFNIYLLVNYQHPDDANQSYFPKFVVVFGLSVAAISILM 266
           MGDFN                FNIYLLVNYQHPDD NQ+YFPKFVVVFGL VA ISILM
Sbjct: 1   MGDFNLALVIVAIVVCIIVFLFNIYLLVNYQHPDDKNQAYFPKFVVVFGLFVATISILM 59


>ref|XP_003516971.1| PREDICTED: LOW QUALITY PROTEIN: LIMR family protein At3g08930-like
           [Glycine max]
          Length = 508

 Score =  158 bits (399), Expect(2) = 1e-53
 Identities = 75/80 (93%), Positives = 77/80 (96%)
 Frame = +1

Query: 337 PADVANRQACRHAIYNGACNLTLPMKSLWLVIYIVDAVLVFFVIPFAMFYYEGDQDKSVG 516
           PADVANRQACRHAIYNGACNLTLPMK LWL IYI+DAVLVFFVIPFAMFYYEGDQDKSVG
Sbjct: 61  PADVANRQACRHAIYNGACNLTLPMKDLWLAIYILDAVLVFFVIPFAMFYYEGDQDKSVG 120

Query: 517 KRIKSALLWVVTTAIVCGLV 576
           KRIKSALLW+VTTAIVC LV
Sbjct: 121 KRIKSALLWMVTTAIVCALV 140



 Score = 77.8 bits (190), Expect(2) = 1e-53
 Identities = 38/59 (64%), Positives = 41/59 (69%)
 Frame = +3

Query: 90  MGDFNXXXXXXXXXXXXXXXXFNIYLLVNYQHPDDANQSYFPKFVVVFGLSVAAISILM 266
           MGDFN                FN+YLLVN+QHPDD NQ+YFPKFVVV GLSVAAISILM
Sbjct: 1   MGDFNLALVIVAIVVCVIVFLFNVYLLVNFQHPDDVNQAYFPKFVVVLGLSVAAISILM 59


>ref|XP_002528095.1| conserved hypothetical protein [Ricinus communis]
           gi|223532484|gb|EEF34274.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 509

 Score =  157 bits (398), Expect(2) = 2e-53
 Identities = 71/80 (88%), Positives = 78/80 (97%)
 Frame = +1

Query: 337 PADVANRQACRHAIYNGACNLTLPMKSLWLVIYIVDAVLVFFVIPFAMFYYEGDQDKSVG 516
           PADVANRQACRHAIYNGACNLTLPMK LW+ +YI+DAVLVFF+IPFAMFYYEGDQDKSVG
Sbjct: 61  PADVANRQACRHAIYNGACNLTLPMKDLWIAVYIIDAVLVFFIIPFAMFYYEGDQDKSVG 120

Query: 517 KRIKSALLWVVTTAIVCGLV 576
           +RIKSAL+WV+TTAIVCGLV
Sbjct: 121 QRIKSALVWVITTAIVCGLV 140



 Score = 77.0 bits (188), Expect(2) = 2e-53
 Identities = 38/59 (64%), Positives = 40/59 (67%)
 Frame = +3

Query: 90  MGDFNXXXXXXXXXXXXXXXXFNIYLLVNYQHPDDANQSYFPKFVVVFGLSVAAISILM 266
           MGDFN                FN+YLLVNYQHPDD NQ+YFPKFVVV GLSVA ISILM
Sbjct: 1   MGDFNLALVIVAIVVCIVVLLFNVYLLVNYQHPDDKNQAYFPKFVVVLGLSVALISILM 59


Top