BLASTX nr result
ID: Coptis21_contig00007258
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00007258
(3060 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI24939.3| unnamed protein product [Vitis vinifera] 598 e-168
ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containi... 598 e-168
ref|XP_003599420.1| Pentatricopeptide repeat-containing protein ... 566 e-158
ref|XP_002517779.1| pentatricopeptide repeat-containing protein,... 556 e-155
ref|XP_002313317.1| predicted protein [Populus trichocarpa] gi|2... 555 e-155
>emb|CBI24939.3| unnamed protein product [Vitis vinifera]
Length = 485
Score = 598 bits (1542), Expect = e-168
Identities = 292/450 (64%), Positives = 357/450 (79%), Gaps = 11/450 (2%)
Frame = -1
Query: 1596 PKHHPTFFSVKASKKQS-----------KKTLSRILTTEAAVQGIERRALSANSTRLWPK 1450
P +P F V+A K+ S KK LSRIL TEAA+ GIER+A S + LWPK
Sbjct: 34 PTSNPPFLFVRAGKRSSGSSQNGLQRQPKKDLSRILRTEAAISGIERKANSRKYSTLWPK 93
Query: 1449 SVLEALTGAITNNQWETALKIFELLRKQDWYVPRCQTYTKLFVMLGKCKQPGYASLLYEK 1270
+VLEAL AI N++E+ALKIF LLRKQ WY PRCQTYTKL +MLGKCKQP ASLL+E
Sbjct: 94 AVLEALDEAIRENRYESALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEV 153
Query: 1269 MVAEGLKPSIDVYTSLVSVYGLSGHFKEAFGIVDDMKSVTDCKPDIYTYSILINCCSKFR 1090
M++EGL+P++DVYT+LVS YG SG +AF V+DMKSV+DCKPD+YTYSILI CC+
Sbjct: 154 MLSEGLRPTLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLG 213
Query: 1089 RFDLIERVLDDMSYLGIECSIVTYNTLIDGYGKAEMFEQMEKLLDDMTKNNKCLPDVYTM 910
RFDLIER+ +MSYLGIECS VTYNT+IDGYGKA+MFE ME L +M ++ CLPD++T+
Sbjct: 214 RFDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTL 273
Query: 909 NSFLWAYGNVGEIKEMERWYEKFQLMEVQSDIKTFNILIRSYGKARMHDKMEKVIDFMKK 730
NSF+WAYGN G+I++ME+WY++FQLM ++ DIKTFNILIRSYGKA M++KM V++FMKK
Sbjct: 274 NSFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKK 333
Query: 729 RFCSPTTVTFNILIEMFGRVGNIVKMEYYFRMMKYRGVKPNSVTYCSLVNFYSKAEEPNK 550
RF SPT VTFNI+IEMFGRVGNI KME +F MK++GVKPNS+TYCSLV+ YSKA K
Sbjct: 334 RFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKK 393
Query: 549 ISLILRQVENSDVVLDTPFFNCVISAYGQVGELQRMEEMFVEMKRRKCMPDNITFATMIQ 370
+ ILRQ+ENSDV LDTPFFNCV+SAYGQ G+++RM E+F+ MK RKC PDNITFATMIQ
Sbjct: 394 VDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQ 453
Query: 369 AYTAQGMTESAQQLETSLLNRKENSGDFLM 280
AY AQGM E+AQ LE +++ K SG L+
Sbjct: 454 AYNAQGMIEAAQNLEVNMITTKNKSGTRLI 483
>ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein At3g53170-like
[Vitis vinifera]
Length = 538
Score = 598 bits (1541), Expect = e-168
Identities = 291/446 (65%), Positives = 355/446 (79%), Gaps = 11/446 (2%)
Frame = -1
Query: 1596 PKHHPTFFSVKASKKQS-----------KKTLSRILTTEAAVQGIERRALSANSTRLWPK 1450
P +P F V+A K+ S KK LSRIL TEAA+ GIER+A S + LWPK
Sbjct: 34 PTSNPPFLFVRAGKRSSGSSQNGLQRQPKKDLSRILRTEAAISGIERKANSRKYSTLWPK 93
Query: 1449 SVLEALTGAITNNQWETALKIFELLRKQDWYVPRCQTYTKLFVMLGKCKQPGYASLLYEK 1270
+VLEAL AI N++E+ALKIF LLRKQ WY PRCQTYTKL +MLGKCKQP ASLL+E
Sbjct: 94 AVLEALDEAIRENRYESALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEV 153
Query: 1269 MVAEGLKPSIDVYTSLVSVYGLSGHFKEAFGIVDDMKSVTDCKPDIYTYSILINCCSKFR 1090
M++EGL+P++DVYT+LVS YG SG +AF V+DMKSV+DCKPD+YTYSILI CC+
Sbjct: 154 MLSEGLRPTLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLG 213
Query: 1089 RFDLIERVLDDMSYLGIECSIVTYNTLIDGYGKAEMFEQMEKLLDDMTKNNKCLPDVYTM 910
RFDLIER+ +MSYLGIECS VTYNT+IDGYGKA+MFE ME L +M ++ CLPD++T+
Sbjct: 214 RFDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTL 273
Query: 909 NSFLWAYGNVGEIKEMERWYEKFQLMEVQSDIKTFNILIRSYGKARMHDKMEKVIDFMKK 730
NSF+WAYGN G+I++ME+WY++FQLM ++ DIKTFNILIRSYGKA M++KM V++FMKK
Sbjct: 274 NSFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKK 333
Query: 729 RFCSPTTVTFNILIEMFGRVGNIVKMEYYFRMMKYRGVKPNSVTYCSLVNFYSKAEEPNK 550
RF SPT VTFNI+IEMFGRVGNI KME +F MK++GVKPNS+TYCSLV+ YSKA K
Sbjct: 334 RFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKK 393
Query: 549 ISLILRQVENSDVVLDTPFFNCVISAYGQVGELQRMEEMFVEMKRRKCMPDNITFATMIQ 370
+ ILRQ+ENSDV LDTPFFNCV+SAYGQ G+++RM E+F+ MK RKC PDNITFATMIQ
Sbjct: 394 VDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQ 453
Query: 369 AYTAQGMTESAQQLETSLLNRKENSG 292
AY AQGM E+AQ LE +++ K SG
Sbjct: 454 AYNAQGMIEAAQNLEVNMITTKNKSG 479
>ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488468|gb|AES69671.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 511
Score = 566 bits (1459), Expect = e-158
Identities = 276/447 (61%), Positives = 348/447 (77%), Gaps = 10/447 (2%)
Frame = -1
Query: 1602 KNPKHHPTF--FSVKASKKQS--------KKTLSRILTTEAAVQGIERRALSANSTRLWP 1453
KN H +F +S+K S K S KK LSRIL TEAA++G+E +A S +LWP
Sbjct: 37 KNHFHSSSFRVYSLKRSSKPSYEGLQKDPKKDLSRILRTEAAIKGVENKAKSWKHKQLWP 96
Query: 1452 KSVLEALTGAITNNQWETALKIFELLRKQDWYVPRCQTYTKLFVMLGKCKQPGYASLLYE 1273
K+VLEAL AI QW+ AL IFELLR Q WY PRCQTYTKL +ML KCKQP AS LYE
Sbjct: 97 KAVLEALDDAIKGCQWQNALMIFELLRNQYWYEPRCQTYTKLLMMLSKCKQPKEASQLYE 156
Query: 1272 KMVAEGLKPSIDVYTSLVSVYGLSGHFKEAFGIVDDMKSVTDCKPDIYTYSILINCCSKF 1093
M+ EGLKP++DV T+LVS YG SG F+ AF ++DMKSV DCKPD+YTYS+LI+CC+KF
Sbjct: 157 TMLFEGLKPTVDVLTALVSAYGQSGLFRHAFSTIEDMKSVVDCKPDVYTYSVLISCCAKF 216
Query: 1092 RRFDLIERVLDDMSYLGIECSIVTYNTLIDGYGKAEMFEQMEKLLDDMTKNNKCLPDVYT 913
RRFDLIERVL DMSY GIEC+ VTYN++IDGYGKA MFEQME L DM +N C PDV+T
Sbjct: 217 RRFDLIERVLADMSYSGIECNSVTYNSIIDGYGKAGMFEQMENSLTDMIENENCQPDVFT 276
Query: 912 MNSFLWAYGNVGEIKEMERWYEKFQLMEVQSDIKTFNILIRSYGKARMHDKMEKVIDFMK 733
+NS + +YGN G+I +ME+WY++FQLM ++ DIKTFN++I+SYGKA M+DKM+ V+DFM+
Sbjct: 277 LNSLIGSYGNGGKIDKMEKWYDEFQLMSIKPDIKTFNMMIKSYGKAGMYDKMKSVMDFME 336
Query: 732 KRFCSPTTVTFNILIEMFGRVGNIVKMEYYFRMMKYRGVKPNSVTYCSLVNFYSKAEEPN 553
+RF +PT VT+N +IE++G+ G I KM+ +F+ MK+ G+KPNSVTYCSLVN YSKA
Sbjct: 337 RRFFAPTIVTYNTVIEVYGKAGEIEKMDKHFKNMKHIGMKPNSVTYCSLVNAYSKAGLIR 396
Query: 552 KISLILRQVENSDVVLDTPFFNCVISAYGQVGELQRMEEMFVEMKRRKCMPDNITFATMI 373
KI ILR VENSDV+LDTPFFNC+ISAYGQVG+L++M E+F+ M+ RKC PD TF MI
Sbjct: 397 KIDSILRHVENSDVILDTPFFNCIISAYGQVGDLKKMGELFLAMRARKCEPDRTTFTCMI 456
Query: 372 QAYTAQGMTESAQQLETSLLNRKENSG 292
QAY QG+TE+A+ LET +++ K++SG
Sbjct: 457 QAYNTQGITEAAKNLETMMISAKDSSG 483
>ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223543051|gb|EEF44586.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 486
Score = 556 bits (1432), Expect = e-155
Identities = 272/469 (57%), Positives = 351/469 (74%), Gaps = 11/469 (2%)
Frame = -1
Query: 1650 SLTTFPANFFIPHTNKKNPKHHPTFFSVKAS-----------KKQSKKTLSRILTTEAAV 1504
S++T P I ++N P + +S K+ +KK LSR L T+AA+
Sbjct: 16 SISTPPTIHLIKVLKERNFHSDPPILGIHSSNLSSDLIPVGPKRHTKKELSRFLRTDAAI 75
Query: 1503 QGIERRALSANSTRLWPKSVLEALTGAITNNQWETALKIFELLRKQDWYVPRCQTYTKLF 1324
+ IE++A S+ RLWPK+VLEAL AI +W++ALKIFELLRKQ WY PRCQTYTKL
Sbjct: 76 KAIEQKADSSKYNRLWPKAVLEALDDAIKERRWKSALKIFELLRKQHWYEPRCQTYTKLL 135
Query: 1323 VMLGKCKQPGYASLLYEKMVAEGLKPSIDVYTSLVSVYGLSGHFKEAFGIVDDMKSVTDC 1144
+MLGKC+QP A LL+E M EGL+P+IDVYT+LVS YG SG +AF VD+MKSV+DC
Sbjct: 136 MMLGKCRQPEEARLLFEVMQTEGLRPTIDVYTALVSAYGESGLLAKAFSTVDEMKSVSDC 195
Query: 1143 KPDIYTYSILINCCSKFRRFDLIERVLDDMSYLGIECSIVTYNTLIDGYGKAEMFEQMEK 964
KPD+YTYS+LIN C+K RFDLI R+L +MSYLG+ECS VT+NT+I+GYGKA+MF +ME
Sbjct: 196 KPDVYTYSVLINICTKLHRFDLIGRILSEMSYLGVECSTVTFNTIINGYGKAKMFREMEN 255
Query: 963 LLDDMTKNNKCLPDVYTMNSFLWAYGNVGEIKEMERWYEKFQLMEVQSDIKTFNILIRSY 784
L +M + +PD++T NS + AYGN G I++ME+WY +FQLM + DIKTFNILI+SY
Sbjct: 256 SLTNMIEIGNSVPDLFTFNSVIGAYGNSGRIEKMEKWYNEFQLMGISPDIKTFNILIKSY 315
Query: 783 GKARMHDKMEKVIDFMKKRFCSPTTVTFNILIEMFGRVGNIVKMEYYFRMMKYRGVKPNS 604
GKA M++K+ VI+FMKKRF PT VT+NI+IE FGR G+I M+ YF+ MK+ G+KPN+
Sbjct: 316 GKAGMYEKINSVIEFMKKRFFPPTVVTYNIIIETFGRAGDIENMDEYFKTMKHLGMKPNA 375
Query: 603 VTYCSLVNFYSKAEEPNKISLILRQVENSDVVLDTPFFNCVISAYGQVGELQRMEEMFVE 424
+TYCSLV+ YSKA K++ ILRQVENSDVVLDT FFNC+I+AYGQ G++ +M E+F+E
Sbjct: 376 ITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNCIINAYGQAGDVDKMAELFLE 435
Query: 423 MKRRKCMPDNITFATMIQAYTAQGMTESAQQLETSLLNRKENSGDFLML 277
M+ R+CMPDN+TFATMIQAY QGMTE+AQ LE +L K NSG M+
Sbjct: 436 MRERECMPDNVTFATMIQAYRGQGMTEAAQALEKMMLAAKGNSGGTWMI 484
>ref|XP_002313317.1| predicted protein [Populus trichocarpa] gi|222849725|gb|EEE87272.1|
predicted protein [Populus trichocarpa]
Length = 474
Score = 555 bits (1430), Expect = e-155
Identities = 270/447 (60%), Positives = 343/447 (76%), Gaps = 11/447 (2%)
Frame = -1
Query: 1599 NPKHHPTFFSVKASK-----------KQSKKTLSRILTTEAAVQGIERRALSANSTRLWP 1453
N P F ++++SK +QSKK LSRIL TEAA++ IE++A S LWP
Sbjct: 20 NGNQDPQFLTIQSSKWCPDPTSTGLQRQSKKELSRILRTEAAIKAIEQKANSKKYNNLWP 79
Query: 1452 KSVLEALTGAITNNQWETALKIFELLRKQDWYVPRCQTYTKLFVMLGKCKQPGYASLLYE 1273
K+VLEAL AI NQWE+ALKIFELLRKQ WY PR +TYTKL +MLGKC+QP S L+E
Sbjct: 80 KAVLEALDDAIKENQWESALKIFELLRKQHWYEPRTKTYTKLLMMLGKCRQPEEGSFLFE 139
Query: 1272 KMVAEGLKPSIDVYTSLVSVYGLSGHFKEAFGIVDDMKSVTDCKPDIYTYSILINCCSKF 1093
M+++GLKP+IDVYT+LVS YG SG +AF IV +MK++++CKPD+YTYSILINCC K
Sbjct: 140 VMLSDGLKPTIDVYTALVSAYGKSGQLDKAFSIVVEMKAISECKPDVYTYSILINCCIKL 199
Query: 1092 RRFDLIERVLDDMSYLGIECSIVTYNTLIDGYGKAEMFEQMEKLLDDMTKNNKCLPDVYT 913
RF+LI +L +MSYLGIECS VTYNT+IDGYGKA+MFE+ME L DM ++ +PD++T
Sbjct: 200 HRFELIRGILAEMSYLGIECSTVTYNTIIDGYGKAKMFEEMENTLTDMIESGSSVPDLFT 259
Query: 912 MNSFLWAYGNVGEIKEMERWYEKFQLMEVQSDIKTFNILIRSYGKARMHDKMEKVIDFMK 733
NS + AYG+ G I +ME+WY +FQLM ++ DIKTFNILIRSYGKA M+ KM V++FM+
Sbjct: 260 FNSIIGAYGSKGRIDKMEKWYTEFQLMGLRQDIKTFNILIRSYGKAGMYGKMRSVLEFME 319
Query: 732 KRFCSPTTVTFNILIEMFGRVGNIVKMEYYFRMMKYRGVKPNSVTYCSLVNFYSKAEEPN 553
KRF SP+ VT NI IE FG+ G+I ME YF MK+ G+KPN+VTYCSLV+ YSKA
Sbjct: 320 KRFFSPSIVTHNIFIETFGKAGDIETMEEYFSKMKHLGIKPNTVTYCSLVSAYSKAGHIM 379
Query: 552 KISLILRQVENSDVVLDTPFFNCVISAYGQVGELQRMEEMFVEMKRRKCMPDNITFATMI 373
K+ ILRQVENSDV+LDTPFFNCVISAYG+ G++++M E+F+ M+ RKC PD+ITFATMI
Sbjct: 380 KVDSILRQVENSDVILDTPFFNCVISAYGRAGDIEKMSELFLGMEGRKCKPDSITFATMI 439
Query: 372 QAYTAQGMTESAQQLETSLLNRKENSG 292
QAY AQGM E+AQ +E ++ ++NSG
Sbjct: 440 QAYNAQGMIEAAQGMENMMIATRKNSG 466