BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00007242
         (1253 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279513.1| PREDICTED: pre-mRNA-splicing factor syf2 iso...   386   e-105
emb|CAN77350.1| hypothetical protein VITISV_007542 [Vitis vinifera]   386   e-105
ref|XP_002279493.1| PREDICTED: pre-mRNA-splicing factor syf2 iso...   380   e-103
ref|XP_002886079.1| GCIP-interacting family protein [Arabidopsis...   361   2e-97
ref|NP_565396.1| pre-mRNA-splicing factor SYF2 [Arabidopsis thal...   359   7e-97

>ref|XP_002279513.1| PREDICTED: pre-mRNA-splicing factor syf2 isoform 2 [Vitis vinifera]
          Length = 295

 Score =  386 bits (992), Expect = e-105
 Identities = 200/294 (68%), Positives = 221/294 (75%), Gaps = 3/294 (1%)
 Frame = +2

Query: 212  EGRVHPKCINASNPYHECTDYCFLKIAQQPSSAGDQS---PDHEEPXXXXXXXXXXXXXX 382
            E RVHP CINASNPYHEC +YCF KIA+  +    +    PD ++               
Sbjct: 4    ERRVHPDCINASNPYHECVEYCFRKIAEAKAQMDKKESGVPDQDKNTHDEGTDPEERSDD 63

Query: 383  XXXXXXXXXXXXXXXGSKLTGRQKKLFDLRLKMNEARKANQNAMVAEKKRIEAPQETRGI 562
                            ++LTGRQKKLF+LRLKMNEARKANQ AMVAEKK++EAP E+RGI
Sbjct: 64   DNDQPVEEIEEVDF--TQLTGRQKKLFELRLKMNEARKANQTAMVAEKKKMEAPPESRGI 121

Query: 563  SKQKFNEERKKKIGRLLDANGLDMKKAYMLDTXXXXXXXXXXXXXXXXXFGWDVFNQKTL 742
            SKQK+ EERKKKIG+LLD NGLDMKKAYMLDT                 FGWDVFNQKTL
Sbjct: 122  SKQKWIEERKKKIGKLLDVNGLDMKKAYMLDTQEMAETKYKKWEKDPAPFGWDVFNQKTL 181

Query: 743  YDAYKKRTKNIVCDIEEYNKMKEADPEFYRDASSLQYGKSPKVSEAKIDKMVKELHDRDD 922
            Y+AYKKRTKNI  DI+EYNKMKEADPEFYR+ASSLQYGK+PK SE KIDKMVKEL DRD+
Sbjct: 182  YNAYKKRTKNIEVDIDEYNKMKEADPEFYREASSLQYGKAPKCSEDKIDKMVKELKDRDE 241

Query: 923  NRKAFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 1084
             R++FSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD
Sbjct: 242  KRQSFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 295


>emb|CAN77350.1| hypothetical protein VITISV_007542 [Vitis vinifera]
          Length = 295

 Score =  386 bits (992), Expect = e-105
 Identities = 200/294 (68%), Positives = 221/294 (75%), Gaps = 3/294 (1%)
 Frame = +2

Query: 212  EGRVHPKCINASNPYHECTDYCFLKIAQQPSSAGDQS---PDHEEPXXXXXXXXXXXXXX 382
            E RVHP CINASNPYHEC +YCF KIA+  +    +    PD ++               
Sbjct: 4    ERRVHPDCINASNPYHECVEYCFRKIAEAKAQMDKKESGVPDQDKNPHDEGTDPEEQSDD 63

Query: 383  XXXXXXXXXXXXXXXGSKLTGRQKKLFDLRLKMNEARKANQNAMVAEKKRIEAPQETRGI 562
                            ++LTGRQKKLF+LRLKMNEARKANQ AMVAEKK++EAP E+RGI
Sbjct: 64   DNDQPVEEIEEVDF--TQLTGRQKKLFELRLKMNEARKANQTAMVAEKKKMEAPPESRGI 121

Query: 563  SKQKFNEERKKKIGRLLDANGLDMKKAYMLDTXXXXXXXXXXXXXXXXXFGWDVFNQKTL 742
            SKQK+ EERKKKIG+LLD NGLDMKKAYMLDT                 FGWDVFNQKTL
Sbjct: 122  SKQKWIEERKKKIGKLLDVNGLDMKKAYMLDTQEMAETKYKKWEKDPAPFGWDVFNQKTL 181

Query: 743  YDAYKKRTKNIVCDIEEYNKMKEADPEFYRDASSLQYGKSPKVSEAKIDKMVKELHDRDD 922
            Y+AYKKRTKNI  DI+EYNKMKEADPEFYR+ASSLQYGK+PK SE KIDKMVKEL DRD+
Sbjct: 182  YNAYKKRTKNIEVDIDEYNKMKEADPEFYREASSLQYGKAPKCSEDKIDKMVKELKDRDE 241

Query: 923  NRKAFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 1084
             R++FSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD
Sbjct: 242  KRQSFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 295


>ref|XP_002279493.1| PREDICTED: pre-mRNA-splicing factor syf2 isoform 1 [Vitis vinifera]
            gi|297744598|emb|CBI37860.3| unnamed protein product
            [Vitis vinifera]
          Length = 313

 Score =  380 bits (977), Expect = e-103
 Identities = 203/312 (65%), Positives = 223/312 (71%), Gaps = 21/312 (6%)
 Frame = +2

Query: 212  EGRVHPKCINASNPYHECTDYCFLKIAQQPSS----------AGDQS-----------PD 328
            E RVHP CINASNPYHEC +YCF KIA+  +           AG  S           PD
Sbjct: 4    ERRVHPDCINASNPYHECVEYCFRKIAEAKAQMDKKESEVMEAGSGSGGGNDQYISGVPD 63

Query: 329  HEEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSKLTGRQKKLFDLRLKMNEARKANQN 508
             ++                               ++LTGRQKKLF+LRLKMNEARKANQ 
Sbjct: 64   QDKNTHDEGTDPEERSDDDNDQPVEEIEEVDF--TQLTGRQKKLFELRLKMNEARKANQT 121

Query: 509  AMVAEKKRIEAPQETRGISKQKFNEERKKKIGRLLDANGLDMKKAYMLDTXXXXXXXXXX 688
            AMVAEKK++EAP E+RGISKQK+ EERKKKIG+LLD NGLDMKKAYMLDT          
Sbjct: 122  AMVAEKKKMEAPPESRGISKQKWIEERKKKIGKLLDVNGLDMKKAYMLDTQEMAETKYKK 181

Query: 689  XXXXXXXFGWDVFNQKTLYDAYKKRTKNIVCDIEEYNKMKEADPEFYRDASSLQYGKSPK 868
                   FGWDVFNQKTLY+AYKKRTKNI  DI+EYNKMKEADPEFYR+ASSLQYGK+PK
Sbjct: 182  WEKDPAPFGWDVFNQKTLYNAYKKRTKNIEVDIDEYNKMKEADPEFYREASSLQYGKAPK 241

Query: 869  VSEAKIDKMVKELHDRDDNRKAFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEI 1048
             SE KIDKMVKEL DRD+ R++FSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEI
Sbjct: 242  CSEDKIDKMVKELKDRDEKRQSFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEI 301

Query: 1049 KNNLERGTALPD 1084
            KNNLERGTALPD
Sbjct: 302  KNNLERGTALPD 313


>ref|XP_002886079.1| GCIP-interacting family protein [Arabidopsis lyrata subsp. lyrata]
            gi|297331919|gb|EFH62338.1| GCIP-interacting family
            protein [Arabidopsis lyrata subsp. lyrata]
          Length = 298

 Score =  361 bits (926), Expect = 2e-97
 Identities = 187/295 (63%), Positives = 212/295 (71%), Gaps = 4/295 (1%)
 Frame = +2

Query: 212  EGRVHPKCINASNPYHECTDYCFLKIAQQPSSAGDQSPD----HEEPXXXXXXXXXXXXX 379
            E RVHP CINASNPYHEC +YCF KIA+  +    Q+      HE+              
Sbjct: 4    ERRVHPDCINASNPYHECVEYCFKKIAEAKARFEKQNTGFAKVHEQTREPLDDKRIEEDS 63

Query: 380  XXXXXXXXXXXXXXXXGSKLTGRQKKLFDLRLKMNEARKANQNAMVAEKKRIEAPQETRG 559
                             ++LTGRQKKLF+LRLKMNEARK+NQ  + +EKK++EAP ET+G
Sbjct: 64   SEEEEEEEDNQEPQVDVTQLTGRQKKLFELRLKMNEARKSNQTDVGSEKKKMEAPTETKG 123

Query: 560  ISKQKFNEERKKKIGRLLDANGLDMKKAYMLDTXXXXXXXXXXXXXXXXXFGWDVFNQKT 739
            ISKQK+ E RKKKIG+LLDANGLDM KAYMLDT                  GWDVFNQKT
Sbjct: 124  ISKQKWLEGRKKKIGKLLDANGLDMTKAYMLDTQETAETKYKKWEKEPTPAGWDVFNQKT 183

Query: 740  LYDAYKKRTKNIVCDIEEYNKMKEADPEFYRDASSLQYGKSPKVSEAKIDKMVKELHDRD 919
            LY+AYKKRTKNI  D+EEYN+M+ ADPEFYR+ASSLQYGK+PK S+ KIDKM KEL DR+
Sbjct: 184  LYNAYKKRTKNIQVDLEEYNRMRAADPEFYREASSLQYGKAPKTSQDKIDKMAKELLDRE 243

Query: 920  DNRKAFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 1084
              R+ FSRRRKF EEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD
Sbjct: 244  QKRQEFSRRRKFREEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 298


>ref|NP_565396.1| pre-mRNA-splicing factor SYF2 [Arabidopsis thaliana]
            gi|20197279|gb|AAC64217.2| Expressed protein [Arabidopsis
            thaliana] gi|20197459|gb|AAM15083.1| Expressed protein
            [Arabidopsis thaliana] gi|20466270|gb|AAM20452.1| unknown
            protein [Arabidopsis thaliana] gi|22136328|gb|AAM91242.1|
            unknown protein [Arabidopsis thaliana]
            gi|330251450|gb|AEC06544.1| pre-mRNA-splicing factor SYF2
            [Arabidopsis thaliana]
          Length = 298

 Score =  359 bits (922), Expect = 7e-97
 Identities = 186/295 (63%), Positives = 212/295 (71%), Gaps = 4/295 (1%)
 Frame = +2

Query: 212  EGRVHPKCINASNPYHECTDYCFLKIAQQPSSAGDQSPD----HEEPXXXXXXXXXXXXX 379
            E RVHP CINASNPYHEC +YCF KIA+  +    Q+      HE+              
Sbjct: 4    ERRVHPDCINASNPYHECVEYCFKKIAEAKARFEKQNTGLAKVHEQTREPLDDKRIEEDS 63

Query: 380  XXXXXXXXXXXXXXXXGSKLTGRQKKLFDLRLKMNEARKANQNAMVAEKKRIEAPQETRG 559
                             ++LTGRQKKLF+LRLKMNEARK+NQ  + +EKK++EAP ET+G
Sbjct: 64   SEEEEEEEDNQEPQVDVTQLTGRQKKLFELRLKMNEARKSNQTDVGSEKKKMEAPTETKG 123

Query: 560  ISKQKFNEERKKKIGRLLDANGLDMKKAYMLDTXXXXXXXXXXXXXXXXXFGWDVFNQKT 739
            ISKQK+ E RKKKIG+LLDANGLDM +AYMLDT                  GWDVFNQKT
Sbjct: 124  ISKQKWLEGRKKKIGKLLDANGLDMTQAYMLDTQEAAESKYKKWEKEPTPAGWDVFNQKT 183

Query: 740  LYDAYKKRTKNIVCDIEEYNKMKEADPEFYRDASSLQYGKSPKVSEAKIDKMVKELHDRD 919
            LY+AYKKRTKNI  D+EEYN+M+ ADPEFYR+ASSLQYGK+PK S+ KIDKM KEL DR+
Sbjct: 184  LYNAYKKRTKNIQVDLEEYNRMRAADPEFYREASSLQYGKAPKTSQDKIDKMAKELLDRE 243

Query: 920  DNRKAFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 1084
              R+ FSRRRKF EEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD
Sbjct: 244  QKRQEFSRRRKFREEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 298