BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00007219
         (1674 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002322717.1| predicted protein [Populus trichocarpa] gi|2...    93   4e-30
ref|XP_002308947.1| predicted protein [Populus trichocarpa] gi|2...    89   7e-29
ref|XP_002532079.1| exosome complex exonuclease rrp43, putative ...    95   9e-29
ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-l...    91   6e-28
ref|XP_003544676.1| PREDICTED: exosome complex component RRP43-l...    90   2e-27

>ref|XP_002322717.1| predicted protein [Populus trichocarpa] gi|222867347|gb|EEF04478.1|
           predicted protein [Populus trichocarpa]
          Length = 439

 Score = 93.2 bits (230), Expect(2) = 4e-30
 Identities = 43/57 (75%), Positives = 50/57 (87%)
 Frame = -2

Query: 176 TMLVAIKMEVIPPASVSLGEGCIAIDFHMPPICSPLIRPSRPAEAAPVLSKQLTDII 6
           TML AIKMEV+ P++ S  EGCIAIDFHMPPICSP++RP RPAEAAPV+SKQL+D I
Sbjct: 71  TMLAAIKMEVMTPSTESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTI 127



 Score = 66.6 bits (161), Expect(2) = 4e-30
 Identities = 35/53 (66%), Positives = 40/53 (75%), Gaps = 6/53 (11%)
 Frame = -1

Query: 318 MGLTDASGDLAGEMEVDAF*GLFPLRFYERHLLESIHPD------PRDTTVAL 178
           MG+ DASGDL+ EMEVDAF  LFPLR++ERHL ESI PD       RDTT+AL
Sbjct: 1   MGVPDASGDLSSEMEVDAFRHLFPLRYFERHLSESIRPDARPLGRARDTTLAL 53


>ref|XP_002308947.1| predicted protein [Populus trichocarpa] gi|222854923|gb|EEE92470.1|
           predicted protein [Populus trichocarpa]
          Length = 318

 Score = 89.0 bits (219), Expect(2) = 7e-29
 Identities = 42/57 (73%), Positives = 49/57 (85%)
 Frame = -2

Query: 176 TMLVAIKMEVIPPASVSLGEGCIAIDFHMPPICSPLIRPSRPAEAAPVLSKQLTDII 6
           TML AIKMEV+ P++ S  EG IAIDFHMPPICSP++RP RPAEAAPV+SKQL+D I
Sbjct: 71  TMLAAIKMEVMTPSTESPEEGSIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTI 127



 Score = 66.6 bits (161), Expect(2) = 7e-29
 Identities = 35/53 (66%), Positives = 40/53 (75%), Gaps = 6/53 (11%)
 Frame = -1

Query: 318 MGLTDASGDLAGEMEVDAF*GLFPLRFYERHLLESIHPD------PRDTTVAL 178
           MG+ DASGDL+ EMEVDAF  LFPLR++ERHL ESI PD       RDTT+AL
Sbjct: 1   MGVPDASGDLSSEMEVDAFRRLFPLRYFERHLSESIRPDARPLGRARDTTLAL 53


>ref|XP_002532079.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
           gi|223528261|gb|EEF30313.1| exosome complex exonuclease
           rrp43, putative [Ricinus communis]
          Length = 303

 Score = 94.7 bits (234), Expect(2) = 9e-29
 Identities = 44/58 (75%), Positives = 51/58 (87%)
 Frame = -2

Query: 176 TMLVAIKMEVIPPASVSLGEGCIAIDFHMPPICSPLIRPSRPAEAAPVLSKQLTDIIL 3
           TM+ AIKMEV+ P+S S  EGCIAIDFHMPPICSPL+RP RPAEAAPV+SKQL+D I+
Sbjct: 71  TMMAAIKMEVMTPSSESPDEGCIAIDFHMPPICSPLVRPGRPAEAAPVVSKQLSDTIM 128



 Score = 60.5 bits (145), Expect(2) = 9e-29
 Identities = 33/53 (62%), Positives = 37/53 (69%), Gaps = 6/53 (11%)
 Frame = -1

Query: 318 MGLTDASGDLAGEMEVDAF*GLFPLRFYERHLLESIHPD------PRDTTVAL 178
           MGL + SGDL+ EME DAF  LFPL F+ERHL ESI PD       RDTT+AL
Sbjct: 1   MGLPNVSGDLSTEMEADAFRRLFPLLFHERHLAESIRPDGRSLGRARDTTLAL 53


>ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-like [Cucumis sativus]
           gi|449503802|ref|XP_004162184.1| PREDICTED: exosome
           complex component RRP43-like [Cucumis sativus]
          Length = 304

 Score = 90.9 bits (224), Expect(2) = 6e-28
 Identities = 41/57 (71%), Positives = 49/57 (85%)
 Frame = -2

Query: 176 TMLVAIKMEVIPPASVSLGEGCIAIDFHMPPICSPLIRPSRPAEAAPVLSKQLTDII 6
           TML AIKMEV+ P+  S  EGCIA+DFHMPP+CSP++RP RPAEAAPV+SKQL+D I
Sbjct: 72  TMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTI 128



 Score = 61.6 bits (148), Expect(2) = 6e-28
 Identities = 34/54 (62%), Positives = 40/54 (74%), Gaps = 7/54 (12%)
 Frame = -1

Query: 318 MGLTDA-SGDLAGEMEVDAF*GLFPLRFYERHLLESIHPD------PRDTTVAL 178
           MGL +A SGDL+ +MEVDAF  LFP++FYERHL ESI PD       RDTT+AL
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIAL 54


>ref|XP_003544676.1| PREDICTED: exosome complex component RRP43-like [Glycine max]
          Length = 299

 Score = 90.1 bits (222), Expect(2) = 2e-27
 Identities = 41/63 (65%), Positives = 52/63 (82%)
 Frame = -2

Query: 194 IQLWLLTMLVAIKMEVIPPASVSLGEGCIAIDFHMPPICSPLIRPSRPAEAAPVLSKQLT 15
           +++   TML AIKMEV+ P+  S  EGC+AIDFHMPPICSP++RP RPAEA+PV+SKQL+
Sbjct: 65  VKIGSTTMLTAIKMEVMTPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLS 124

Query: 14  DII 6
           D I
Sbjct: 125 DTI 127



 Score = 60.5 bits (145), Expect(2) = 2e-27
 Identities = 29/41 (70%), Positives = 34/41 (82%)
 Frame = -1

Query: 318 MGLTDASGDLAGEMEVDAF*GLFPLRFYERHLLESIHPDPR 196
           MGL++AS DL+ EMEVDAF  LFPLR++ERHL ESI PD R
Sbjct: 1   MGLSNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDGR 41