BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00007217
         (854 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    63   1e-12
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    54   3e-07

>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 62.8 bits (151), Expect(2) = 1e-12
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
 Frame = +2

Query: 245 PSIH--KQV*STYTLKLLDSVVWKLIHNALPTYDNQKER-IHMVSRCHLY-KKEEESVIH 412
           P++H  K + + YT      + W+ +HN LPT DN ++R  ++VS C  + +K+ E+  H
Sbjct: 67  PTVHWAKMLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQAETSSH 126

Query: 413 MLWECESTKELWT*LFEVHKVQPTNSFHGILTAPKLLSPIRKEL*NSAIAHIMS*IWKTR 592
           +  +C  T +LW  L +         F  IL   +++  +     NSAI HIM  IW   
Sbjct: 127 IFLQCPVTLQLWDWLLKA--TDQHLDFSSILNISRMVQHVM----NSAIVHIMWSIWLEC 180

Query: 593 NRIYFEDKRMQNSYIKNGIKASGMMATEFMFNTI 694
           N  YF+  +   S + N I A  ++   FM + +
Sbjct: 181 NNKYFDGVQKPMSTLFNTILAE-VLRLSFMLDIV 213



 Score = 36.6 bits (83), Expect(2) = 1e-12
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 693 SIEDLSVLHSLNIKGRS-R*RRIKEVSWIPPDFGMLKANTDGSSIGSP 833
           S++D  +    +I  ++ R    +E+ W+PP  G +K N DGS +GSP
Sbjct: 218 SMQDFKLARLFSIPFKTNRVNPCREIIWVPPHGGCMKINCDGSVVGSP 265


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 53.9 bits (128), Expect(2) = 3e-07
 Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 7/131 (5%)
 Frame = +2

Query: 299 VVWKLIHNALPTYDNQKER-IHMVSRCHLYKKEEESVIHMLWECESTKELWT*LFE-VHK 472
           + W+L+HN LPT +N ++R   +VS C    K  ES  H+ +EC  T  LW  L +   K
Sbjct: 52  ITWRLLHNKLPTDENLRKRGCLIVSICCFCMKSAESSQHIFFECHVTSRLWDWLGKGTDK 111

Query: 473 VQPTNSFHGIL-----TAPKLLSPIRKEL*NSAIAHIMS*IWKTRNRIYFEDKRMQNSYI 637
           +   +S   +L     +  KL++ I     NSAI H +  IW  RN+  F +K    + +
Sbjct: 112 LLDCSSCLQLLIRNWGSGSKLVNNIL----NSAIIHTIWSIWIERNQRCFHNKHQAMTTL 167

Query: 638 KNGIKASGMMA 670
            N I A   M+
Sbjct: 168 FNIILAEVKMS 178



 Score = 26.9 bits (58), Expect(2) = 3e-07
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 762 EVSWIPPDFGMLKANTDGSSIG 827
           ++ W PP   ++K N DGSS+G
Sbjct: 213 DIIWKPPIGDIVKINCDGSSVG 234