BLASTX nr result
ID: Coptis21_contig00007181
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00007181
(1051 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN79596.1| hypothetical protein VITISV_042386 [Vitis vinifera] 191 4e-61
ref|XP_002267134.1| PREDICTED: E3 ubiquitin-protein ligase RING1... 191 4e-61
ref|XP_004137524.1| PREDICTED: E3 ubiquitin-protein ligase RING1... 195 2e-57
ref|XP_002329726.1| predicted protein [Populus trichocarpa] gi|1... 192 2e-55
gb|ACT21194.1| zinc finger protein [Carica papaya] 179 2e-54
>emb|CAN79596.1| hypothetical protein VITISV_042386 [Vitis vinifera]
Length = 371
Score = 191 bits (484), Expect(2) = 4e-61
Identities = 86/102 (84%), Positives = 93/102 (91%)
Frame = +1
Query: 34 DYFIGPGLEQLIQQLAENDPNRYGTPPAAKSAVQGLPDIKIDDQLLKSDSSQCAVCKDEF 213
DYFIGPGLEQLIQQLAENDPNRYGTPPA+KSA++GLP I+I +LL +DSSQCAVCKD F
Sbjct: 167 DYFIGPGLEQLIQQLAENDPNRYGTPPASKSAIEGLPTIRITVELLGTDSSQCAVCKDSF 226
Query: 214 ELGMDAKLMPCKHIYHPDCILPWLELHNSCPVCRYELPTDDP 339
EL +AK MPCKHIYH DCILPWLELHNSCPVCRYELPTDDP
Sbjct: 227 ELDEEAKQMPCKHIYHNDCILPWLELHNSCPVCRYELPTDDP 268
Score = 71.6 bits (174), Expect(2) = 4e-61
Identities = 36/80 (45%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +2
Query: 398 LPTDDPDYENRPANEDTSIQNRSGLTVSLGDSGGEDS---AGGVAAMQEDLASPSPRTAE 568
LPTDDPDYE+R + + V+ + + AGG A E+ +PRTA+
Sbjct: 263 LPTDDPDYEHRTRGGQVNQTGGNAAAVAAAGAASNSASGAAGGAAVSGENPNPQTPRTAD 322
Query: 569 RRFRISFPWPFSVFGAPAET 628
R FRISFPWPF FG+PAET
Sbjct: 323 RMFRISFPWPFRTFGSPAET 342
>ref|XP_002267134.1| PREDICTED: E3 ubiquitin-protein ligase RING1 isoform 1 [Vitis
vinifera] gi|359491811|ref|XP_003634328.1| PREDICTED: E3
ubiquitin-protein ligase RING1 isoform 2 [Vitis
vinifera]
Length = 369
Score = 191 bits (484), Expect(2) = 4e-61
Identities = 86/102 (84%), Positives = 93/102 (91%)
Frame = +1
Query: 34 DYFIGPGLEQLIQQLAENDPNRYGTPPAAKSAVQGLPDIKIDDQLLKSDSSQCAVCKDEF 213
DYFIGPGLEQLIQQLAENDPNRYGTPPA+KSA++GLP I+I +LL +DSSQCAVCKD F
Sbjct: 165 DYFIGPGLEQLIQQLAENDPNRYGTPPASKSAIEGLPTIRITVELLGTDSSQCAVCKDSF 224
Query: 214 ELGMDAKLMPCKHIYHPDCILPWLELHNSCPVCRYELPTDDP 339
EL +AK MPCKHIYH DCILPWLELHNSCPVCRYELPTDDP
Sbjct: 225 ELDEEAKQMPCKHIYHNDCILPWLELHNSCPVCRYELPTDDP 266
Score = 71.6 bits (174), Expect(2) = 4e-61
Identities = 36/80 (45%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +2
Query: 398 LPTDDPDYENRPANEDTSIQNRSGLTVSLGDSGGEDS---AGGVAAMQEDLASPSPRTAE 568
LPTDDPDYE+R + + V+ + + AGG A E+ +PRTA+
Sbjct: 261 LPTDDPDYEHRTRGGQVNQTGGNAAAVAAAGAASNSASGAAGGAAVSGENPNPQTPRTAD 320
Query: 569 RRFRISFPWPFSVFGAPAET 628
R FRISFPWPF FG+PAET
Sbjct: 321 RMFRISFPWPFRTFGSPAET 340
>ref|XP_004137524.1| PREDICTED: E3 ubiquitin-protein ligase RING1-like isoform 1
[Cucumis sativus] gi|449439503|ref|XP_004137525.1|
PREDICTED: E3 ubiquitin-protein ligase RING1-like
isoform 2 [Cucumis sativus]
gi|449439505|ref|XP_004137526.1| PREDICTED: E3
ubiquitin-protein ligase RING1-like isoform 3 [Cucumis
sativus] gi|449503086|ref|XP_004161827.1| PREDICTED: E3
ubiquitin-protein ligase RING1-like isoform 1 [Cucumis
sativus] gi|449503089|ref|XP_004161828.1| PREDICTED: E3
ubiquitin-protein ligase RING1-like isoform 2 [Cucumis
sativus] gi|449503091|ref|XP_004161829.1| PREDICTED: E3
ubiquitin-protein ligase RING1-like isoform 3 [Cucumis
sativus]
Length = 378
Score = 195 bits (495), Expect(2) = 2e-57
Identities = 87/102 (85%), Positives = 94/102 (92%)
Frame = +1
Query: 34 DYFIGPGLEQLIQQLAENDPNRYGTPPAAKSAVQGLPDIKIDDQLLKSDSSQCAVCKDEF 213
DYF GPGLEQLIQQLAENDPNRYGTPPA+KSA++GLPDIKI ++LL +DSSQCAVCKD F
Sbjct: 172 DYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIEGLPDIKITEELLATDSSQCAVCKDTF 231
Query: 214 ELGMDAKLMPCKHIYHPDCILPWLELHNSCPVCRYELPTDDP 339
EL AKLMPCKHIYH DCI+PWLELHNSCPVCRYELPTDDP
Sbjct: 232 ELDEVAKLMPCKHIYHADCIIPWLELHNSCPVCRYELPTDDP 273
Score = 54.7 bits (130), Expect(2) = 2e-57
Identities = 38/81 (46%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Frame = +2
Query: 398 LPTDDPDYENRPANEDTSIQNRS-GLTVSLGDS--GGEDSAGGVAAMQEDLASPSPRTAE 568
LPTDDPDYE R +S NRS + GDS GGE+ G E+ S + + E
Sbjct: 268 LPTDDPDYEQR--TRGSSAPNRSQSESQPFGDSSTGGENVVGSDPNSDEN--SQTQQMGE 323
Query: 569 RRF-RISFPWPFSVFGAPAET 628
RR RI+FPWPF FG+ AET
Sbjct: 324 RRVRRIAFPWPFRGFGSAAET 344
>ref|XP_002329726.1| predicted protein [Populus trichocarpa] gi|118486397|gb|ABK95038.1|
unknown [Populus trichocarpa]
gi|222870634|gb|EEF07765.1| predicted protein [Populus
trichocarpa]
Length = 345
Score = 192 bits (489), Expect(2) = 2e-55
Identities = 85/101 (84%), Positives = 94/101 (93%)
Frame = +1
Query: 34 DYFIGPGLEQLIQQLAENDPNRYGTPPAAKSAVQGLPDIKIDDQLLKSDSSQCAVCKDEF 213
DYFIGPGLEQLIQQLAENDPNRYGTPPAAKSAV+ LPD+K+ ++L++SDSSQCAVCKD F
Sbjct: 148 DYFIGPGLEQLIQQLAENDPNRYGTPPAAKSAVENLPDVKVTEELMQSDSSQCAVCKDSF 207
Query: 214 ELGMDAKLMPCKHIYHPDCILPWLELHNSCPVCRYELPTDD 336
ELG AK +PCKHIYH DCI+PWLELHNSCPVCRYELPTDD
Sbjct: 208 ELGEVAKQIPCKHIYHKDCIMPWLELHNSCPVCRYELPTDD 248
Score = 50.8 bits (120), Expect(2) = 2e-55
Identities = 30/70 (42%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +2
Query: 398 LPTDDPDYENRPANEDTSIQNRSGLTVSLGDSGGEDSAGGVA-AMQEDLASPSPRTAERR 574
LPTDD DYE R N + G GG +S G ++ D + +PR ERR
Sbjct: 244 LPTDDQDYEQRKGNGSNGVNQNVG--------GGINSGGSISDGDNSDGNAQTPR--ERR 293
Query: 575 FRISFPWPFS 604
FRI FPWPFS
Sbjct: 294 FRIPFPWPFS 303
>gb|ACT21194.1| zinc finger protein [Carica papaya]
Length = 340
Score = 179 bits (453), Expect(2) = 2e-54
Identities = 80/101 (79%), Positives = 88/101 (87%)
Frame = +1
Query: 34 DYFIGPGLEQLIQQLAENDPNRYGTPPAAKSAVQGLPDIKIDDQLLKSDSSQCAVCKDEF 213
DYF+GPGLEQLIQQLAENDPNR+GTPPA+KSA++ LP IKI ++ SDSSQCAVCKD F
Sbjct: 147 DYFLGPGLEQLIQQLAENDPNRHGTPPASKSAIEALPTIKIFQEMPDSDSSQCAVCKDSF 206
Query: 214 ELGMDAKLMPCKHIYHPDCILPWLELHNSCPVCRYELPTDD 336
L +AK MPCKHIYH CILPWLELHNSCPVCRYELPTDD
Sbjct: 207 ALAEEAKQMPCKHIYHSQCILPWLELHNSCPVCRYELPTDD 247
Score = 61.2 bits (147), Expect(2) = 2e-54
Identities = 43/111 (38%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Frame = +2
Query: 398 LPTDDPDYENRPANEDTSIQNRSGLT-----VSLGDSGGEDSAGGVAAMQEDLASPSPRT 562
LPTDD DYE+R T QN SG T V+ G++G D+ +PR+
Sbjct: 243 LPTDDADYEHRTRANRTPAQNVSGSTDAVNAVADGNAGNRDNP------------ETPRS 290
Query: 563 AERRFRISFPWPF-SVFGAPAETXXXXXXXXXXXXXXXPDPGNEPTYDDLD 712
ERRFRI PWPF S FG+ AET G+EP ++DLD
Sbjct: 291 VERRFRIFLPWPFRSSFGSGAETSNSGTSGGDADTNPG-SRGSEPRHEDLD 340