BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00007155
         (2050 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   498   e-138
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc...   427   e-117
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc...   416   e-113
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   414   e-113
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop...   412   e-112

>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  498 bits (1283), Expect = e-138
 Identities = 288/627 (45%), Positives = 378/627 (60%), Gaps = 42/627 (6%)
 Frame = +3

Query: 6    KALFLGIANGVKGYRLWSLEDN--KFLVSSDVTFDEASVLKFSKPER-----------VE 146
            K +FLG A GVKGYRLW  ED   KF++S DVTFDE+++    K                
Sbjct: 780  KCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAMFGQRKEFGDLAGTSKTDLGAN 839

Query: 147  QSGDSELTPAIELELSDAADEWLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASTRP 326
            Q  + E+   +E  + D ++E  V                               A+ RP
Sbjct: 840  QKVEFEVDAPMENGVDDTSEEQPVIDQNDSQSI----------------------AAHRP 877

Query: 327  KRLFKEVLKFGHDTPVKHYGRVDLVAYTLNIVGNE-PDSFKEAVRDAHYRDWLVAMQEEM 503
            +R  +  +++           V         +G E P S+KEA+     + WL +M +EM
Sbjct: 878  RREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLSSMDDEM 937

Query: 504  LSLDKNHTRDLVLLPKGKRVIGRKWVFRKKEVLPESHDTEFKARVVAKGFSQRKEVDCNE 683
             SL KN T +LV LP+G + +  KW+F+ K+ +      ++K+R+VAKGFSQ++ +D NE
Sbjct: 938  ASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXDEPPKYKSRLVAKGFSQKEGIDYNE 997

Query: 684  VFSSVVKDTSIRVLLSLVAHFDLELVHLDVKTAFLHGDLEEEFYMRQPVGFVVAGKENHV 863
            VFS VVK  SIRVLL++V+ F+LEL  LDVKTAFLHG+LEEE YM+QP GFV + K +HV
Sbjct: 998  VFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHV 1057

Query: 864  CKLNGSLYGLKQSPGQWYKRFDTFMMEKHHNRSKFDCYVYFRKLRGDVFVYLLLYVDDML 1043
            C L  SLYGLKQSP QWYKRFD FM+     R+++D  VYF+ L    F+YLLLYVDDML
Sbjct: 1058 CFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDML 1117

Query: 1044 IASKSMVEIEKWKSQLSSEFEIKDLG----------------------SLVEEHEHMARV 1157
            IA+K+  EI K K  LSSEFE+KDLG                      S  EE E+M  V
Sbjct: 1118 IAAKNRAEINKLKQLLSSEFEMKDLGAAKKILGMEIWRDRDAXLFTLPSTDEEVEYMKSV 1177

Query: 1158 PYTSAVGNLMHAMVCIRPDISQAVSVVSRYMATPGKQHWKAVKWVMRCLKGTLDVGLVYG 1337
            PY+S VG+LM+AMVC RPD++ AVSVVSR+M+ PGK HW+AVKW+MR LKG+  V LVYG
Sbjct: 1178 PYSSVVGSLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYLKGSSSVCLVYG 1237

Query: 1338 -GDTSHVSGLVDYAD-----DLDRRRSTTGYVFTIHGAPVSWRSMLQATVALSTTEAEYM 1499
             GD S  SGLV + D     DL +RRS T Y+FT+ G  +SWR+ LQ TVALSTTEAEYM
Sbjct: 1238 NGDVS--SGLVGFTDSDHGGDLMKRRSLTCYIFTLFGCAISWRASLQPTVALSTTEAEYM 1295

Query: 1500 AVAEAEKEAIGLRGLLEDMGIEQDSVALYGDSQSTIHMAKHRVHHARPKHMDVRYRFVRD 1679
            ++ E  KE + L G L  +G+      +Y DSQS + +AK+ V+H R KH+DVR  F+RD
Sbjct: 1296 SLTEGVKEGMWLNGFLGSLGLNLSKPVIYCDSQSALCLAKNPVYHERTKHIDVRLNFIRD 1355

Query: 1680 AVEDGDVALEKVGTTDNPVDMLPKVVT 1760
             +E+   ++EKV T  NP DML K +T
Sbjct: 1356 VIEEKLFSIEKVATEVNPADMLTKPIT 1382


>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1131

 Score =  427 bits (1098), Expect = e-117
 Identities = 256/594 (43%), Positives = 343/594 (57%), Gaps = 4/594 (0%)
 Frame = +3

Query: 6    KALFLGIANGVKGYRLWSLEDNKFLVSSDVTFDEASVLKFSKPERVEQSGDSELTPAIEL 185
            K LFLG  +GVKGY+LW+ E NK  +S  V F+E+ +   S P        ++ +P + L
Sbjct: 602  KCLFLGYGSGVKGYKLWNPETNKTFMSRSVVFNESVMFNDSLP--------TDHSPPV-L 652

Query: 186  ELSDAADEWLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASTRPKRLFKEVLKFGHD 365
            +  D                                      A  R KR    +++   +
Sbjct: 653  QPQDEP-----------------------------------IAHRRTKRSCGALVRLIEE 677

Query: 366  TPVKHYGR--VDLVAYTLNIVGNEPDSFKEAVRDAHYRDWLVAMQEEMLSLDKNHTRDLV 539
              + +Y     + V  TL +      ++ EAV       W+ AMQ EM  L+KN T +LV
Sbjct: 678  CDIVYYAFSCAEQVENTLELA-----TYTEAVVSGDREKWISAMQGEMQPLEKNGTWELV 732

Query: 540  LLPKGKRVIGRKWVFRKKEVLPESHDTEFKARVVAKGFSQRKEVDCNEVFSSVVKDTSIR 719
             LPK K+ +  KW+F++KE L  S    FKA +VAKGFSQ   VD N+VFS VVK +SIR
Sbjct: 733  HLPKQKKPVRCKWIFKRKEGLSPSEPPRFKATLVAKGFSQIAGVDYNDVFSPVVKHSSIR 792

Query: 720  VLLSLVAHFDLELVHLDVKTAFLHGDLEEEFYMRQPVGFVVAGKENHVCKLNGSLYGLKQ 899
               S+VA  DLEL  LDVKT FLHG+LE E YM QP GF+V GKE++VCKL  SL GLKQ
Sbjct: 793  TFFSIVAMHDLELEQLDVKTTFLHGELEVEIYMDQPEGFIVPGKEDYVCKLKRSLDGLKQ 852

Query: 900  SPGQWYKRFDTFMMEKHHNRSKFDCYVYFRKLRGDVFVYLLLYVDDMLIASKSMVEIEKW 1079
            SP QWYKRFD+FM+     RS+FD  VY + + G   +YLLL+VDDMLIA+KS  +I   
Sbjct: 853  SPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFINGSP-IYLLLHVDDMLIAAKSKEQITTL 911

Query: 1080 KSQLSSEFEIKDLGSLVEEHEHMARVPYTSAVGNLMHAMVCIRPDISQAVSVVSRYMATP 1259
            K QLSSEF++KDLG+             T  + +L HAM           S+VSRY+A P
Sbjct: 912  KKQLSSEFDMKDLGA-------------TKKILDLSHAM-----------SLVSRYLANP 947

Query: 1260 GKQHWKAVKWVMRCLKGTLDVGLVYGGDTSHVSGLV--DYADDLDRRRSTTGYVFTIHGA 1433
            GK+HWKA++W+ R L+GT D  L +G     + G V  D+A DLD+RRS  GYVFTI   
Sbjct: 948  GKEHWKAIQWIFRYLRGTADACLKFGRTDKGLVGYVDSDFAADLDKRRSLIGYVFTIGSC 1007

Query: 1434 PVSWRSMLQATVALSTTEAEYMAVAEAEKEAIGLRGLLEDMGIEQDSVALYGDSQSTIHM 1613
             VSW++ LQ+ VA STTEAEYMA+AEA KE++ L+GL  ++      + L+ DSQS I +
Sbjct: 1008 AVSWKATLQSVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCINLFCDSQSAICL 1067

Query: 1614 AKHRVHHARPKHMDVRYRFVRDAVEDGDVALEKVGTTDNPVDMLPKVVTGVKFQ 1775
             K ++ H R KH+D++Y +VRD V  G + + K+ T DNP +M+ K V   KF+
Sbjct: 1068 TKDKMFHERTKHIDIKYHYVRDVVAQGKLKVCKISTHDNPANMMTKHVPVAKFE 1121


>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1156

 Score =  416 bits (1069), Expect = e-113
 Identities = 247/575 (42%), Positives = 325/575 (56%), Gaps = 15/575 (2%)
 Frame = +3

Query: 6    KALFLGIANGVKGYRLWSLEDNKFLVSSDVTFDEASVLKFSKPERVEQSGDSELTPAIEL 185
            K LFLG  +GVKGY+LW+ + NK  +S  V F+E+ +   S P  V   G  E    + +
Sbjct: 614  KCLFLGYGSGVKGYKLWNPKTNKTFMSRSVVFNESVMFNDSLPTDVILGGSDEEQQYVSV 673

Query: 186  ELSDAADEWLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASTRPKRLFKEVLKFGHD 365
            ++    D+                                  A  R KR     ++F  +
Sbjct: 674  QVEHVDDQ-------ETEIVGNDVNVTVQHSPPVLQPQDEPIAHRRTKRSCGAPIRFIEE 726

Query: 366  TPVKHYGR--VDLVAYTLNIVGNEPDSFKEAVRDAHYRDWLVAMQEEMLSLDKNHTRDLV 539
              + +Y     + V  TL     EP ++ EAV       W+ AMQEEM SL+KN T +LV
Sbjct: 727  CDMVYYAFSCAEQVENTL-----EPATYTEAVVSGDREKWISAMQEEMQSLEKNGTWELV 781

Query: 540  LLPKGKRVIGRKWVFRKKEVLPESHDTEFKARVVAKGFSQRKEVDCNEVFSSVVKDTSIR 719
             LPK K+ +  KW+F++KE L  S    FKA +                           
Sbjct: 782  HLPKQKKPVHCKWIFKRKEGLSPSEPPRFKASI--------------------------- 814

Query: 720  VLLSLVAHFDLELVHLDVKTAFLHGDLEEEFYMRQPVGFVVAGKENHVCKLNGSLYGLKQ 899
                            DVKTAFLHG+LEEE YM QP GF+V GKE++VCKL  SLYGLKQ
Sbjct: 815  ----------------DVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQ 858

Query: 900  SPGQWYKRFDTFMMEKHHNRSKFDCYVYFRKLRGDVFVYLLLYVDDMLIASKSMVEIEKW 1079
            SP QWYKRFD+FM+     RS+FD  VY + + G   +YLLLYVDDMLIA+KS  +I   
Sbjct: 859  SPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVNGSP-IYLLLYVDDMLIAAKSKEQITAL 917

Query: 1080 KSQLSSEFEIKDLG-----------SLVEEHEHMARVPYTSAVGNLMHAMVCIRPDISQA 1226
            K QLSSEF++KDLG           S  E+ E+M+RVPY+SAVG+LM+AMVC RPD+S A
Sbjct: 918  KKQLSSEFDMKDLGVAKKILALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSRPDLSHA 977

Query: 1227 VSVVSRYMATPGKQHWKAVKWVMRCLKGTLDVGLVYGGDTSHVSGLV--DYADDLDRRRS 1400
            +S+VSRYMA PGK+HWKAV+W+ R LKG  D  L +G     + G V  D+A DLD+RRS
Sbjct: 978  MSLVSRYMANPGKEHWKAVQWIFRYLKGIADACLKFGRTDKGLVGYVDSDFAADLDKRRS 1037

Query: 1401 TTGYVFTIHGAPVSWRSMLQATVALSTTEAEYMAVAEAEKEAIGLRGLLEDMGIEQDSVA 1580
             TGYVFTI    +SW++ LQ  VA STTEAEYMA+AEA KE++ L+GL  ++      + 
Sbjct: 1038 LTGYVFTIGSCAMSWKATLQPVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCIN 1097

Query: 1581 LYGDSQSTIHMAKHRVHHARPKHMDVRYRFVRDAV 1685
            L+ DSQS I + K ++ H R KH+D++Y +VRD V
Sbjct: 1098 LFCDSQSAICLTKDQMFHERTKHIDIKYHYVRDVV 1132


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  414 bits (1064), Expect = e-113
 Identities = 257/643 (39%), Positives = 340/643 (52%), Gaps = 53/643 (8%)
 Frame = +3

Query: 6    KALFLGIANGVKGYRLWSLEDNKFLVSSDVTFDEASVLKFSKPERVEQSGDSELTPAIEL 185
            K +FLG  +GVKGY+LW  E  K ++S +V F E+ +L       V      + +  +E 
Sbjct: 716  KCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEH 775

Query: 186  ELSDAADEWLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASTRPKRLFKEVLKFGHD 365
             +S                                       A  +PKR  K        
Sbjct: 776  LISSGH----APEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKP------- 824

Query: 366  TPVKHYGRVDLVAYTLNIV----GN-EPDSFKEAVRDAHYRDWLVAMQEEMLSLDKNHTR 530
             P ++    ++VAY L++     GN EP ++ EA+       W+ AM +EM SL KNHT 
Sbjct: 825  -PRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTW 883

Query: 531  DLVLLPKGKRVIGRKWVFRKKEVLPESHDTEFKARVVAKGFSQRKEVDCNEVFSSVVKDT 710
            + V LPK K+ I  KW+F++KE +  S +  +KAR+VAKG+SQ   +D N+VFS ++K +
Sbjct: 884  EFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPIMKHS 943

Query: 711  SIRVLLSLVAHFDLELVHLDVKTAFLHGDLEEEFYMRQPVGFVVAGKENHVCKLNGSLYG 890
            SIR LL +VA  D EL  +DVKTAFLHG+LEE+ YM QP GFVV GKEN VC+L  SLYG
Sbjct: 944  SIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYG 1003

Query: 891  LKQSPGQWYKRFDTFMMEKHHNRSKFDCYVYFRKLRGDVFVYLLLYVDDMLIASKSMVEI 1070
            LKQSP QWYKRFD+FM+ +   RS +D  VY + + G   +YLLLYVDDMLIA+K   EI
Sbjct: 1004 LKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVDGSA-IYLLLYVDDMLIAAKDKSEI 1062

Query: 1071 EKWKSQLSSEFEIKDLGSLV---------EEH---------------------------- 1139
             K K+QLSSEF +KDLG+           E H                            
Sbjct: 1063 AKLKAQLSSEFGMKDLGAAKKILGMEITRERHSGKLYLSQKGYIKKVLRRFNMHDVKPII 1122

Query: 1140 -----------EHMARVPYTSAVGNLMHAMVCIRPDISQAVSVVSRYMATPGKQHWKAVK 1286
                       E+M+RVPY+SAVG+LM+AM                              
Sbjct: 1123 FRLCPQSDYDIEYMSRVPYSSAVGSLMYAM------------------------------ 1152

Query: 1287 WVMRCLKGTLDVGLVYGGDTSHVSGLVDYADDLDRRRSTTGYVFTIHGAPVSWRSMLQAT 1466
                        G    G   +V    D+A DLDRRRS TGYVFTI G  VSW++ LQAT
Sbjct: 1153 -----------FGRSRDGFVGYVDS--DFAGDLDRRRSLTGYVFTIGGCDVSWKASLQAT 1199

Query: 1467 VALSTTEAEYMAVAEAEKEAIGLRGLLEDMGIEQDSVALYGDSQSTIHMAKHRVHHARPK 1646
            VALSTTEAEYMA++EA KEAI LRGL  ++      + ++ DSQS I + K ++ H R K
Sbjct: 1200 VALSTTEAEYMAISEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTK 1259

Query: 1647 HMDVRYRFVRDAVEDGDVALEKVGTTDNPVDMLPKVVTGVKFQ 1775
            H+DVRY  +R  + +GDV + K+ T DNP DM+ K V+  KF+
Sbjct: 1260 HIDVRYHIIRGVIVEGDVKVCKISTHDNPADMMTKPVSATKFE 1302


>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1166

 Score =  412 bits (1059), Expect = e-112
 Identities = 219/462 (47%), Positives = 307/462 (66%), Gaps = 18/462 (3%)
 Frame = +3

Query: 333  LFKEVLKFGHDTPVKHYGRVDLVAYTL----NIVGNEPDSFKEAVRDAHYRDWLVAMQEE 500
            L +++ +  +  P   +   D VAY L    ++   EP S++EA++ +  + W  AM+EE
Sbjct: 696  LARDMKRRSNIRPPSRFEDEDFVAYALATAEDLEEEEPKSYEEALKSSKRKQWENAMKEE 755

Query: 501  MLSLDKNHTRDLVLLPKGKRVIGRKWVFRKKEVLPESHDTEFKARVVAKGFSQRKEVDCN 680
            M S  K+HT DL+  P+ +++IG KW+F+ K  +P      +KAR+VAKGFSQ++ +D N
Sbjct: 756  MDSHKKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGVEKQRYKARLVAKGFSQQEGIDYN 815

Query: 681  EVFSSVVKDTSIRVLLSLVAHFDLELVHLDVKTAFLHGDLEEEFYMRQPVGFVVAGKENH 860
            EVFS VVK  SIR++LSL+ + D EL  +DVKTAFLHG+LEE   M QP GF+  G EN 
Sbjct: 816  EVFSLVVKHVSIRLMLSLMVNMDYELEQMDVKTAFLHGNLEERILMSQPEGFIQEGNENK 875

Query: 861  VCKLNGSLYGLKQSPGQWYKRFDTFMMEKHHNRSKFDCYVYFRKLRGDVFVYLLLYVDDM 1040
            VC L  SLYGLKQSP  W +RFD FM ++   RS +D  VY R  + D  +YLLLYVDDM
Sbjct: 876  VCLLRKSLYGLKQSPRLWNQRFDAFMKDQKFERSCYDPCVYMRDTQTDKAIYLLLYVDDM 935

Query: 1041 LIASKSMVEIEKWKSQLSS---------EFEIKDLGSLVEEHE--HMARVPYTSAVGNLM 1187
            LIAS +M  I++ K++L+S          F+ + L    ++ E  HM R+PY + VG+LM
Sbjct: 936  LIASGNMAIIQELKNKLNSRPVITPTAAHFKFRSLSEEEKKTEAVHMERIPYANVVGSLM 995

Query: 1188 HAMVCIRPDISQAVSVVSRYMATPGKQHWKAVKWVMRCLKGTLDVGLVYGGDTSH-VSGL 1364
            +AMV  RPD++  V  +SR+M++PG++HW AVKWV+R LKG     L++  D+   + G 
Sbjct: 996  YAMVGSRPDLAFVVGFISRFMSSPGREHWSAVKWVLRYLKGAYTQNLIFKKDSKFCIEGF 1055

Query: 1365 --VDYADDLDRRRSTTGYVFTIHGAPVSWRSMLQATVALSTTEAEYMAVAEAEKEAIGLR 1538
               DYA DLDRRRS TGYVF + G  +SW+S LQ+ VALSTTEAEYMA+ EA KEAI L+
Sbjct: 1056 SDSDYATDLDRRRSVTGYVFKVGGNTISWKSSLQSVVALSTTEAEYMALTEAVKEAIWLK 1115

Query: 1539 GLLEDMGIEQDSVALYGDSQSTIHMAKHRVHHARPKHMDVRY 1664
            GL  ++G +QD+V ++ DSQS + +AK+ VHH R +H+D ++
Sbjct: 1116 GLCSELGFKQDNVMVHCDSQSALALAKNSVHHERTEHIDTKF 1157