BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00007091
         (658 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...    46   1e-06
ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...    41   2e-06

>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score = 45.8 bits (107), Expect(2) = 1e-06
 Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
 Frame = -3

Query: 557 STKLNYETILYVLKQLEKYPHWALDFLNWSV-KNEFKPS 444
           S  L +ET++YVLK+L+K PH A DF NW   +N FKPS
Sbjct: 87  SPLLTHETVIYVLKKLDKDPHKAWDFFNWVCDRNGFKPS 125



 Score = 32.0 bits (71), Expect(2) = 1e-06
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 376 KPSLTVYNLVLRILGCNESMNKFRDVVNKISSQGRY 269
           KPS  +Y+L+LRIL   +SM  F   + K+  QG Y
Sbjct: 123 KPSSPLYSLMLRILVKKDSMKNFWITLRKMKEQGFY 158


>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score = 40.8 bits (94), Expect(3) = 2e-06
 Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
 Frame = -3

Query: 557 STKLNYETILYVLKQLEKYPHWALDFLNW-SVKNEFKPS 444
           S+ L +ET++YVLK+L+K P    +F NW + KN F+PS
Sbjct: 89  SSVLTHETVIYVLKKLDKDPQRTWNFFNWVTEKNGFRPS 127



 Score = 30.4 bits (67), Expect(3) = 2e-06
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 376 KPSLTVYNLVLRILGCNESMNKFRDVVNKISSQG 275
           +PS  +Y+L+LR L   ESM +F   + K+  QG
Sbjct: 125 RPSSAMYSLILRSLVHGESMKQFWVTIRKMKEQG 158



 Score = 25.4 bits (54), Expect(3) = 2e-06
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -2

Query: 654 KL*FSCTPSSIVELVMMNE 598
           KL FS  P+SIVELV+ N+
Sbjct: 58  KLFFSSKPNSIVELVLEND 76