BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00006966
         (344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512769.1| pentatricopeptide repeat-containing protein,...   176   1e-42
ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containi...   175   3e-42
ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containi...   156   2e-36
ref|XP_003623854.1| Pentatricopeptide repeat-containing protein ...   151   5e-35
gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]   151   5e-35

>ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547780|gb|EEF49272.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 684

 Score =  176 bits (447), Expect = 1e-42
 Identities = 82/114 (71%), Positives = 96/114 (84%)
 Frame = +1

Query: 1   GELELSQRVFNNLPRRDTVAWNTIILANSMHGKGEEALSLFNKMISSGIKPNSVTFTGVL 180
           G+LELS+ VFN +PR+D VAWNT+I+ANSMHGKG E+L LFNKM+ SG++PNSVTF GVL
Sbjct: 361 GDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVL 420

Query: 181 SGCSHSRLVDEARFILQSMSKNHQIQPDADHYSSMVDVLSRAGRVEEAYDFIKK 342
           SGCSHS+L DE   +  SMS  H I PDADHYS MVDVLSRAGR+EEAYDFI+K
Sbjct: 421 SGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRK 474


>ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera] gi|297736133|emb|CBI24171.3| unnamed
           protein product [Vitis vinifera]
          Length = 687

 Score =  175 bits (444), Expect = 3e-42
 Identities = 81/114 (71%), Positives = 100/114 (87%)
 Frame = +1

Query: 1   GELELSQRVFNNLPRRDTVAWNTIILANSMHGKGEEALSLFNKMISSGIKPNSVTFTGVL 180
           G+LELS+RVF+ + +RDTV+WNT+I+A SMHG GEEAL LF +M+ SG++PNSVTFTGVL
Sbjct: 364 GDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVL 423

Query: 181 SGCSHSRLVDEARFILQSMSKNHQIQPDADHYSSMVDVLSRAGRVEEAYDFIKK 342
           SGCSHSRLVDE   I  SMS++H ++PDADH+S MVDVLSRAGR+EEAY+FIKK
Sbjct: 424 SGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKK 477



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 33/111 (29%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
 Frame = +1

Query: 16  SQRVFNNLPRRDTVAWNTIILANSMHGKGEEALSLFNKMISSGIKPNSVTFTGVLSGCSH 195
           +Q VF+++ RRDTV+WN +I A  ++ + E+ LS+F +M+S G+  N  ++  V+ GC  
Sbjct: 233 AQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQ 292

Query: 196 SRLVDEARFILQSMSKNHQIQPDADHYSSMVDVLS-----RAGRVEEAYDF 333
           +   ++A  +L  M +N   +P+    +S++   +     R G+    Y F
Sbjct: 293 NGRTEKALEVLSRM-QNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIF 342


>ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  156 bits (394), Expect = 2e-36
 Identities = 72/114 (63%), Positives = 92/114 (80%)
 Frame = +1

Query: 1   GELELSQRVFNNLPRRDTVAWNTIILANSMHGKGEEALSLFNKMISSGIKPNSVTFTGVL 180
           G+L LS+ VF+ + R+D VAWNT+I+AN+MHG G E L LF  M+ SGIKPNSVTFTGVL
Sbjct: 418 GDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVL 477

Query: 181 SGCSHSRLVDEARFILQSMSKNHQIQPDADHYSSMVDVLSRAGRVEEAYDFIKK 342
           SGCSHSRLV+E   I  SM ++H ++PDA+HY+ MVDV SRAGR+ EAY+FI++
Sbjct: 478 SGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQR 531


>ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355498869|gb|AES80072.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  151 bits (382), Expect = 5e-35
 Identities = 70/113 (61%), Positives = 93/113 (82%)
 Frame = +1

Query: 1   GELELSQRVFNNLPRRDTVAWNTIILANSMHGKGEEALSLFNKMISSGIKPNSVTFTGVL 180
           G+L LS+ VF+ + R+D VAWNT+I+AN+MHG G+EAL LF+KM+ S ++PNSVTFTGVL
Sbjct: 450 GDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVL 509

Query: 181 SGCSHSRLVDEARFILQSMSKNHQIQPDADHYSSMVDVLSRAGRVEEAYDFIK 339
           SGCSHSRLV+E   I  SM ++H ++PDA+HYS +VD+ SRAGR+ EAY FI+
Sbjct: 510 SGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQ 562


>gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  151 bits (382), Expect = 5e-35
 Identities = 70/113 (61%), Positives = 93/113 (82%)
 Frame = +1

Query: 1   GELELSQRVFNNLPRRDTVAWNTIILANSMHGKGEEALSLFNKMISSGIKPNSVTFTGVL 180
           G+L LS+ VF+ + R+D VAWNT+I+AN+MHG G+EAL LF+KM+ S ++PNSVTFTGVL
Sbjct: 364 GDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVL 423

Query: 181 SGCSHSRLVDEARFILQSMSKNHQIQPDADHYSSMVDVLSRAGRVEEAYDFIK 339
           SGCSHSRLV+E   I  SM ++H ++PDA+HYS +VD+ SRAGR+ EAY FI+
Sbjct: 424 SGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQ 476