BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00006900
         (1213 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276497.1| PREDICTED: THO complex subunit 4 [Vitis vini...   217   4e-54
ref|XP_002531919.1| RNA and export factor binding protein, putat...   213   1e-52
ref|XP_003553032.1| PREDICTED: THO complex subunit 4-like [Glyci...   197   3e-48
ref|XP_003537446.1| PREDICTED: uncharacterized protein LOC100820...   192   2e-46
ref|XP_003600719.1| THO complex subunit [Medicago truncatula] gi...   189   2e-45

>ref|XP_002276497.1| PREDICTED: THO complex subunit 4 [Vitis vinifera]
           gi|296087136|emb|CBI33510.3| unnamed protein product
           [Vitis vinifera]
          Length = 269

 Score =  217 bits (553), Expect = 4e-54
 Identities = 117/220 (53%), Positives = 139/220 (63%)
 Frame = +1

Query: 22  KGNLRVNARPSAHTIAKTFSRNKTVPWQRGLLEDSLIAAGYSGTETGAKLYVSNLHSGVT 201
           +G LRVNARPS++ IAK+  R K +PWQ  L EDSL AAG  G E G KLY+SNL  GVT
Sbjct: 50  RGPLRVNARPSSYAIAKSSRRTK-IPWQHDLFEDSLRAAGLPGLEAGTKLYISNLDYGVT 108

Query: 202 NEDIKELFSLIGELKRYTVHYDRNGRSSGSAEVIFTRRADALAAMKRYNNVQLDGKPMNI 381
           NEDI+ELFS IG++KRY VHY++NGR SGSAEV++TRR+DA AA+KRYNNV LDGKPM I
Sbjct: 109 NEDIRELFSEIGDIKRYAVHYEKNGRPSGSAEVVYTRRSDAFAAVKRYNNVLLDGKPMKI 168

Query: 382 EIIGTSVATPXXXXXXXXXXXXXXXMRTVFMPPGSGRARTSAPVNXXXXXXXXXXXXXXX 561
           EIIG+    P                RTV M PG G AR S  +N               
Sbjct: 169 EIIGSDSDMPVSARVNVIGGVNGKRRRTVVMTPGVGHARGSTAINRSSSRRGRGGLSNGR 228

Query: 562 XXXXXXXXXXXXXXXKKEPIEKSADELNKELDNYHAEAMN 681
                          +K+P+EKSA EL+KELDNYHAEAM+
Sbjct: 229 GRGRAGSRGRGRGRGRKQPVEKSAVELDKELDNYHAEAMH 268


>ref|XP_002531919.1| RNA and export factor binding protein, putative [Ricinus communis]
           gi|223528429|gb|EEF30463.1| RNA and export factor
           binding protein, putative [Ricinus communis]
          Length = 268

 Score =  213 bits (541), Expect = 1e-52
 Identities = 118/223 (52%), Positives = 140/223 (62%), Gaps = 1/223 (0%)
 Frame = +1

Query: 13  AGPKGNLRVNARPSAHTIAKTFSRNKTVPWQRGLLEDSLIAAGYSGTETGAKLYVSNLHS 192
           AG KG L VNARPS  +IAK   R + +PWQ  LLEDS+ AAG +G E G KLYVSNL  
Sbjct: 45  AGRKGPLSVNARPSQFSIAKPNRRIRNLPWQHDLLEDSIRAAGITGVEVGTKLYVSNLEY 104

Query: 193 GVTNEDIKELFSLIGELKRYTVHYDRNGRSSGSAEVIFTRRADALAAMKRYNNVQLDGKP 372
           GV+NEDI+ELF+ IG+LKRY VHYD+NGRS+GSAEV++TRR++A AA+K+YNNV LDGKP
Sbjct: 105 GVSNEDIRELFAEIGDLKRYAVHYDKNGRSTGSAEVVYTRRSEAFAALKKYNNVLLDGKP 164

Query: 373 MNIEIIGTSVATPXXXXXXXXXXXXXXXMRTVFMPPGSGRARTSAPVN-XXXXXXXXXXX 549
           M IEI+G +   P                RTV M PG GR R  AP N            
Sbjct: 165 MKIEIVGVTGEAP-ISARVNVTGINGRRKRTVVMTPGPGRGRGFAPSNRGAGQRSRGGLR 223

Query: 550 XXXXXXXXXXXXXXXXXXXKKEPIEKSADELNKELDNYHAEAM 678
                              KK+P+EKSADEL+KELD YHAEAM
Sbjct: 224 NLGRGRGRGRGRGGHGGRGKKQPLEKSADELDKELDTYHAEAM 266


>ref|XP_003553032.1| PREDICTED: THO complex subunit 4-like [Glycine max]
          Length = 298

 Score =  197 bits (502), Expect = 3e-48
 Identities = 113/236 (47%), Positives = 136/236 (57%), Gaps = 14/236 (5%)
 Frame = +1

Query: 22  KGNLRVNARPSAHTIAKTFSRNKTVPWQRGLLEDSLIAAGYSGTETGAKLYVSNLHSGVT 201
           +G L VN RPS++ IAK+  R +  PWQ  L EDSL AAG  G E G KLYVSNL  GVT
Sbjct: 68  RGPLMVNTRPSSYAIAKSIRRARPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVT 127

Query: 202 NEDIKELFSLIGELKRYTVHYDRNGRSSGSAEVIFTRRADALAAMKRYNNVQLDGKPMNI 381
           NEDI+ELFS +GELKR+ VHYD+NG  SGSAEV++TRR+DA AA+KRYNNV LDGKPM I
Sbjct: 128 NEDIRELFSELGELKRFAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKI 187

Query: 382 EIIGTSVATPXXXXXXXXXXXXXXXMRTVFMPP--------------GSGRARTSAPVNX 519
           EI+G++   P                RTV M P              G+GR R   P   
Sbjct: 188 EIVGSNSELP-ISARVNVTGVNGRRKRTVVMTPRGGQAGGGPTMPNRGAGRGRRGGP--- 243

Query: 520 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKEPIEKSADELNKELDNYHAEAMNIS 687
                                        +K+ +EKSA+EL+KEL+ YHAEAMNIS
Sbjct: 244 -RSGSGRGGGGGRGRGRGSRGGGGGRGRGRKDAVEKSAEELDKELETYHAEAMNIS 298


>ref|XP_003537446.1| PREDICTED: uncharacterized protein LOC100820344 [Glycine max]
          Length = 298

 Score =  192 bits (487), Expect = 2e-46
 Identities = 109/231 (47%), Positives = 133/231 (57%), Gaps = 9/231 (3%)
 Frame = +1

Query: 22  KGNLRVNARPSAHTIAKTFSRNKTVPWQRGLLEDSLIAAGYSGTETGAKLYVSNLHSGVT 201
           +G L VN RPS++ IAK+  R +  PWQ  L EDSL AAG  G E G KLYVSNL  GVT
Sbjct: 69  RGPLMVNTRPSSYAIAKSIRRARPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVT 128

Query: 202 NEDIKELFSLIGELKRYTVHYDRNGRSSGSAEVIFTRRADALAAMKRYNNVQLDGKPMNI 381
           NEDI+ELFS +GELKR+ VHYD+NG  SGSAEV++TRR+DA AA+KRYNNV LDGKPM I
Sbjct: 129 NEDIRELFSELGELKRFAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKI 188

Query: 382 EIIGTSVATPXXXXXXXXXXXXXXXMRTVFMPPGSGRARTSAPV---------NXXXXXX 534
           EI+G++   P                RTV M    G+A     +                
Sbjct: 189 EIVGSNSELP-ISARVNVTGVNGRRKRTVVMTSRGGQAGGGPAMPTRGAGWGRRGGPRSG 247

Query: 535 XXXXXXXXXXXXXXXXXXXXXXXXKKEPIEKSADELNKELDNYHAEAMNIS 687
                                   +K+ +EKSA+EL+KEL+ YHAEAMNIS
Sbjct: 248 SGRGGAGGRGRGRGRGGAGGRGRGRKDAVEKSAEELDKELETYHAEAMNIS 298


>ref|XP_003600719.1| THO complex subunit [Medicago truncatula]
           gi|355489767|gb|AES70970.1| THO complex subunit
           [Medicago truncatula]
          Length = 291

 Score =  189 bits (479), Expect = 2e-45
 Identities = 108/228 (47%), Positives = 131/228 (57%), Gaps = 9/228 (3%)
 Frame = +1

Query: 22  KGNLRVNARPSAHTIAKTFSRNKTVPWQRGLLEDSLIAAGYSGTETGAKLYVSNLHSGVT 201
           +G L VN R S++ IAK+  R KT+ WQ  L EDSL AAG  G E   KLYVSNL  GVT
Sbjct: 62  RGPLNVNTRASSYAIAKSIRRPKTLAWQSDLFEDSLRAAGIQGVEADTKLYVSNLDRGVT 121

Query: 202 NEDIKELFSLIGELKRYTVHYDRNGRSSGSAEVIFTRRADALAAMKRYNNVQLDGKPMNI 381
           NEDI+ELFS +GELKRY VHYD+NG  +GSAEV++ RR+DA AA+KRYNNV LDGKPM I
Sbjct: 122 NEDIRELFSELGELKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKI 181

Query: 382 EIIGTSVATP----XXXXXXXXXXXXXXXMRTVFMPPGSGRARTSAPVN-----XXXXXX 534
           EI+GT+ A P                    RTV M P  GR    A +N           
Sbjct: 182 EIVGTNSALPVTARVNVSSMNVSAMNGQRKRTVVMTPRGGRGGGPAMLNRGAGWGRRGGS 241

Query: 535 XXXXXXXXXXXXXXXXXXXXXXXXKKEPIEKSADELNKELDNYHAEAM 678
                                   +K+ +EKSA++L+KEL+ YHAEAM
Sbjct: 242 RGGSGSMRGRGRGRPGRGGGRGRGRKDGVEKSAEQLDKELETYHAEAM 289