BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00006877
         (388 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_177468.2| GDP-L-fucose synthase [Arabidopsis thaliana] gi...   177   8e-43
ref|NP_564040.1| GDP-L-fucose synthase [Arabidopsis thaliana] gi...   176   2e-42
ref|NP_973853.1| GDP-L-fucose synthase [Arabidopsis thaliana] gi...   176   2e-42
gb|AAG52124.1|AC010556_6 GDP-4-keto-6-deoxy-D-mannose-3,5-epimer...   175   3e-42
ref|XP_002888917.1| GDP-4-keto-6-deoxymannose-3,5-epimerase-4-re...   174   7e-42

>ref|NP_177468.2| GDP-L-fucose synthase [Arabidopsis thaliana]
           gi|334302905|sp|O49213.3|FCL1_ARATH RecName:
           Full=GDP-L-fucose synthase 1; AltName:
           Full=GDP-4-keto-6-deoxy-D-mannose-3,
           5-epimerase-4-reductase 1; Short=AtFX; Short=AtGER1
           gi|110737581|dbj|BAF00732.1|
           GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4- reductase
           [Arabidopsis thaliana] gi|119360017|gb|ABL66737.1|
           At1g73250 [Arabidopsis thaliana]
           gi|332197313|gb|AEE35434.1| GDP-L-fucose synthase
           [Arabidopsis thaliana]
          Length = 323

 Score =  177 bits (449), Expect = 8e-43
 Identities = 88/118 (74%), Positives = 100/118 (84%)
 Frame = +1

Query: 34  ISNQPLSTMDPSSKIFVAGHKGLVGSAIVKKLTESGYTNLLLPTHSELDLTRQTQVEQFF 213
           I ++  S  D S+KIFVAGH+GLVGSAIV+KL E G+TNL+L TH+ELDLTRQ  VE FF
Sbjct: 5   IGSEVSSMSDKSAKIFVAGHRGLVGSAIVRKLQEQGFTNLVLKTHAELDLTRQADVESFF 64

Query: 214 STHKPNYVILAAAKVGGIHANHTYPADFISINLQIQTNVIHSAYTNDVKKILFLGSSC 387
           S  KP YVILAAAKVGGIHAN+TYPADFI +NLQIQTNVIHSAY + VKK+LFLGSSC
Sbjct: 65  SQEKPVYVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYEHGVKKLLFLGSSC 122


>ref|NP_564040.1| GDP-L-fucose synthase [Arabidopsis thaliana]
           gi|75174832|sp|Q9LMU0.1|FCL2_ARATH RecName:
           Full=Putative GDP-L-fucose synthase 2; AltName:
           Full=GDP-4-keto-6-deoxy-D-mannose-3,
           5-epimerase-4-reductase 2; Short=AtGER2
           gi|9665067|gb|AAF97269.1|AC034106_12 Strong similarity
           to GER1 from Arabidopsis thaliana gb|AF045286. ESTs
           gb|AI996642, gb|AV533951 come from this gene
           [Arabidopsis thaliana] gi|17380848|gb|AAL36236.1|
           putative GDP-L-fucose synthetase [Arabidopsis thaliana]
           gi|20465283|gb|AAM20005.1| putative GDP-L-fucose
           synthetase [Arabidopsis thaliana]
           gi|332191529|gb|AEE29650.1| GDP-L-fucose synthase
           [Arabidopsis thaliana]
          Length = 328

 Score =  176 bits (445), Expect = 2e-42
 Identities = 85/110 (77%), Positives = 99/110 (90%)
 Frame = +1

Query: 58  MDPSSKIFVAGHKGLVGSAIVKKLTESGYTNLLLPTHSELDLTRQTQVEQFFSTHKPNYV 237
           ++ S+KIFVAGH+GLVGSAIV+KL + G+TNL+L THSELDLT Q+ VE FF+T KP YV
Sbjct: 16  LEKSAKIFVAGHRGLVGSAIVRKLQDQGFTNLVLRTHSELDLTSQSDVESFFATEKPVYV 75

Query: 238 ILAAAKVGGIHANHTYPADFISINLQIQTNVIHSAYTNDVKKILFLGSSC 387
           ILAAAKVGGIHAN+TYPADFI +NLQIQTNVIHSAYT+ VKK+LFLGSSC
Sbjct: 76  ILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYTHGVKKLLFLGSSC 125


>ref|NP_973853.1| GDP-L-fucose synthase [Arabidopsis thaliana]
           gi|42571527|ref|NP_973854.1| GDP-L-fucose synthase
           [Arabidopsis thaliana] gi|222424189|dbj|BAH20053.1|
           AT1G17890 [Arabidopsis thaliana]
           gi|332191527|gb|AEE29648.1| GDP-L-fucose synthase
           [Arabidopsis thaliana] gi|332191528|gb|AEE29649.1|
           GDP-L-fucose synthase [Arabidopsis thaliana]
          Length = 320

 Score =  176 bits (445), Expect = 2e-42
 Identities = 85/110 (77%), Positives = 99/110 (90%)
 Frame = +1

Query: 58  MDPSSKIFVAGHKGLVGSAIVKKLTESGYTNLLLPTHSELDLTRQTQVEQFFSTHKPNYV 237
           ++ S+KIFVAGH+GLVGSAIV+KL + G+TNL+L THSELDLT Q+ VE FF+T KP YV
Sbjct: 8   LEKSAKIFVAGHRGLVGSAIVRKLQDQGFTNLVLRTHSELDLTSQSDVESFFATEKPVYV 67

Query: 238 ILAAAKVGGIHANHTYPADFISINLQIQTNVIHSAYTNDVKKILFLGSSC 387
           ILAAAKVGGIHAN+TYPADFI +NLQIQTNVIHSAYT+ VKK+LFLGSSC
Sbjct: 68  ILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYTHGVKKLLFLGSSC 117


>gb|AAG52124.1|AC010556_6 GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase (GER1);
           21556-22494 [Arabidopsis thaliana]
           gi|6016479|gb|AAC02703.2|
           GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
           [Arabidopsis thaliana] gi|7804474|dbj|BAA95670.1|
           GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
           [Arabidopsis thaliana]
          Length = 312

 Score =  175 bits (444), Expect = 3e-42
 Identities = 86/109 (78%), Positives = 96/109 (88%)
 Frame = +1

Query: 61  DPSSKIFVAGHKGLVGSAIVKKLTESGYTNLLLPTHSELDLTRQTQVEQFFSTHKPNYVI 240
           D S+KIFVAGH+GLVGSAIV+KL E G+TNL+L TH+ELDLTRQ  VE FFS  KP YVI
Sbjct: 3   DKSAKIFVAGHRGLVGSAIVRKLQEQGFTNLVLKTHAELDLTRQADVESFFSQEKPVYVI 62

Query: 241 LAAAKVGGIHANHTYPADFISINLQIQTNVIHSAYTNDVKKILFLGSSC 387
           LAAAKVGGIHAN+TYPADFI +NLQIQTNVIHSAY + VKK+LFLGSSC
Sbjct: 63  LAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYEHGVKKLLFLGSSC 111


>ref|XP_002888917.1| GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 [Arabidopsis
           lyrata subsp. lyrata] gi|297334758|gb|EFH65176.1|
           GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1
           [Arabidopsis lyrata subsp. lyrata]
          Length = 323

 Score =  174 bits (441), Expect = 7e-42
 Identities = 86/118 (72%), Positives = 99/118 (83%)
 Frame = +1

Query: 34  ISNQPLSTMDPSSKIFVAGHKGLVGSAIVKKLTESGYTNLLLPTHSELDLTRQTQVEQFF 213
           I ++  S  D S+KIFVAGH+GLVGSAI +KL E G+TNL+L TH+ELDLTRQ  VE FF
Sbjct: 5   IGSEVSSMSDKSAKIFVAGHRGLVGSAIARKLQEQGFTNLVLRTHAELDLTRQADVESFF 64

Query: 214 STHKPNYVILAAAKVGGIHANHTYPADFISINLQIQTNVIHSAYTNDVKKILFLGSSC 387
           +  KP YVILAAAKVGGIHAN+TYPADFI +NLQIQTNVIHSAY + VKK+LFLGSSC
Sbjct: 65  AQEKPVYVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYEHGVKKLLFLGSSC 122