BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00006842
         (678 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsi...    45   2e-07
gb|ABW81180.1| gag-pol-polyprotein1 [Arabidopsis cebennensis]          49   2e-07
emb|CAN65033.1| hypothetical protein VITISV_041069 [Vitis vinifera]    44   3e-06
emb|CAN70585.1| hypothetical protein VITISV_013305 [Vitis vinifera]    43   7e-06
emb|CAN84021.1| hypothetical protein VITISV_032575 [Vitis vinifera]    43   7e-06

>gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 889

 Score = 45.1 bits (105), Expect(2) = 2e-07
 Identities = 22/72 (30%), Positives = 40/72 (55%)
 Frame = -3

Query: 535 IYTDSLHNKSGSGLGFDILKLNKNIIGRSLRFGFDASHNMAVSETVICGIRTTLQLGATK 356
           ++ D   N+ GSG+G  +      +I +SL+ GF+AS+N +  E +I GI+   + G  +
Sbjct: 645 LHVDGSSNRQGSGVGIQLTSPTGEVIEQSLQLGFNASNNESEYEALIAGIKLAQEKGIRE 704

Query: 355 LRLIILSQLLAT 320
           +     SQL+ +
Sbjct: 705 IHAYSDSQLVTS 716



 Score = 36.2 bits (82), Expect(2) = 2e-07
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = -2

Query: 341 SKPVASHFE**YAARDDRMDVYLDLVQQIAGNFTSISIVQYSRYDVRHPSSIVSLS 174
           S+ V S F   Y A+D+RM+ YL+LV+ +A  F S  + +  R +     ++ +L+
Sbjct: 711 SQLVTSQFHGEYEAKDERMEAYLELVKTLAQQFESFKLTRIPRGENTSADTLAALA 766


>gb|ABW81180.1| gag-pol-polyprotein1 [Arabidopsis cebennensis]
          Length = 296

 Score = 49.3 bits (116), Expect(2) = 2e-07
 Identities = 30/92 (32%), Positives = 47/92 (51%)
 Frame = -3

Query: 598 LSLPPEGDDLKYLSDISADC*IYTDSLHNKSGSGLGFDILKLNKNIIGRSLRFGFDASHN 419
           + LPPE     + S   A   ++ +   +K GSG+G  +      I+ +S R  FDA++N
Sbjct: 75  IELPPETPPDTHESSPDAFWILHVNGSSSKQGSGVGIRLASPAGKILEQSFRLNFDATNN 134

Query: 418 MAVSETVICGIRTTLQLGATKLRLIILSQLLA 323
           +A  E +I G++    L   KLR    SQL+A
Sbjct: 135 VAGYEALIAGLKLARGLKVNKLRAFCHSQLVA 166



 Score = 32.0 bits (71), Expect(2) = 2e-07
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -2

Query: 344 YSKPVASHFE**YAARDDRMDVYLDLVQQIA 252
           +S+ VA  F   Y ARD+RM+ YL L Q +A
Sbjct: 161 HSQLVAKQFNGEYTARDERMEAYLALTQDVA 191


>emb|CAN65033.1| hypothetical protein VITISV_041069 [Vitis vinifera]
          Length = 981

 Score = 44.3 bits (103), Expect(2) = 3e-06
 Identities = 23/67 (34%), Positives = 36/67 (53%)
 Frame = -3

Query: 526 DSLHNKSGSGLGFDILKLNKNIIGRSLRFGFDASHNMAVSETVICGIRTTLQLGATKLRL 347
           D     SGSG+G  +       + +++R GF AS+N A  E ++ G+   L L  +KLR+
Sbjct: 446 DGASRSSGSGVGLXLQSPTGEXLEQAIRLGFSASNNEAEYEAILSGLDLALALSVSKLRI 505

Query: 346 IILSQLL 326
              SQL+
Sbjct: 506 YSDSQLV 512



 Score = 32.3 bits (72), Expect(2) = 3e-06
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -2

Query: 341 SKPVASHFE**YAARDDRMDVYLDLVQQIAGNFTSISIVQYSRYDVRHPSSIVSLS 174
           S+ V  H +  Y A+D RM  YL  V+     FT  +I +  R D RH  ++  ++
Sbjct: 509 SQLVVRHVQKEYEAKDSRMARYLAKVRSTLQQFTEWTIEKIKRADNRHADALAGIA 564


>emb|CAN70585.1| hypothetical protein VITISV_013305 [Vitis vinifera]
          Length = 1027

 Score = 42.7 bits (99), Expect(2) = 7e-06
 Identities = 23/67 (34%), Positives = 36/67 (53%)
 Frame = -3

Query: 526 DSLHNKSGSGLGFDILKLNKNIIGRSLRFGFDASHNMAVSETVICGIRTTLQLGATKLRL 347
           D     SGSG+G  +       + +++R GF AS+N A  E ++ G+   L L  +KLR+
Sbjct: 459 DGASRSSGSGVGLVLQSPTGEHLEQAIRLGFSASNNEAEYEAILSGLDLALALSVSKLRI 518

Query: 346 IILSQLL 326
              SQL+
Sbjct: 519 YSDSQLV 525



 Score = 32.7 bits (73), Expect(2) = 7e-06
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -2

Query: 341 SKPVASHFE**YAARDDRMDVYLDLVQQIAGNFTSISIVQYSRYDVRHPSSIVSLS 174
           S+ V  H +  Y A+D RM  YL  V+     FT  +I +  R D RH  ++  ++
Sbjct: 522 SQLVVRHIQKEYEAKDSRMARYLAKVRSTLQQFTEWTIEKIKRADNRHADALAGIA 577


>emb|CAN84021.1| hypothetical protein VITISV_032575 [Vitis vinifera]
          Length = 962

 Score = 42.7 bits (99), Expect(2) = 7e-06
 Identities = 23/67 (34%), Positives = 36/67 (53%)
 Frame = -3

Query: 526 DSLHNKSGSGLGFDILKLNKNIIGRSLRFGFDASHNMAVSETVICGIRTTLQLGATKLRL 347
           D     SGSG+G  +       + +++R GF AS+N A  E ++ G+   L L  +KLR+
Sbjct: 428 DGASRSSGSGVGLVLQSPTGEHLEQAIRLGFSASNNEAEYEAILSGLDLALALSVSKLRI 487

Query: 346 IILSQLL 326
              SQL+
Sbjct: 488 YSDSQLV 494



 Score = 32.7 bits (73), Expect(2) = 7e-06
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -2

Query: 341 SKPVASHFE**YAARDDRMDVYLDLVQQIAGNFTSISIVQYSRYDVRHPSSIVSLS 174
           S+ V  H +  Y A+D RM  YL  V+     FT  +I +  R D RH  ++  ++
Sbjct: 491 SQLVVRHIQKEYEAKDSRMARYLAKVRSTLQQFTEWTIEKIKRADNRHADALAGIA 546