BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00006808
         (652 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001105562.1| 40S ribosomal protein S11 [Zea mays] gi|2420...   238   1e-60
ref|NP_001060007.1| Os07g0565000 [Oryza sativa Japonica Group] g...   237   2e-60
ref|NP_194809.1| 40S ribosomal protein S11-2 [Arabidopsis thalia...   237   2e-60
ref|XP_002285422.1| PREDICTED: 40S ribosomal protein S11 [Vitis ...   236   3e-60
gb|AFK49430.1| unknown [Lotus japonicus]                              235   5e-60

>ref|NP_001105562.1| 40S ribosomal protein S11 [Zea mays]
           gi|242074300|ref|XP_002447086.1| hypothetical protein
           SORBIDRAFT_06g028330 [Sorghum bicolor]
           gi|133867|sp|P25460.1|RS11_MAIZE RecName: Full=40S
           ribosomal protein S11 gi|22470|emb|CAA39438.1| ribosomal
           protein S11 [Zea mays] gi|195618816|gb|ACG31238.1| 40S
           ribosomal protein S11 [Zea mays]
           gi|195624418|gb|ACG34039.1| 40S ribosomal protein S11
           [Zea mays] gi|195636792|gb|ACG37864.1| 40S ribosomal
           protein S11 [Zea mays] gi|195654421|gb|ACG46678.1| 40S
           ribosomal protein S11 [Zea mays]
           gi|223948191|gb|ACN28179.1| unknown [Zea mays]
           gi|223974433|gb|ACN31404.1| unknown [Zea mays]
           gi|223974575|gb|ACN31475.1| unknown [Zea mays]
           gi|241938269|gb|EES11414.1| hypothetical protein
           SORBIDRAFT_06g028330 [Sorghum bicolor]
           gi|413919495|gb|AFW59427.1| ribosomal protein S11 [Zea
           mays] gi|414585478|tpg|DAA36049.1| TPA: 40S ribosomal
           protein S11 [Zea mays]
          Length = 159

 Score =  238 bits (606), Expect = 1e-60
 Identities = 117/145 (80%), Positives = 121/145 (83%)
 Frame = +2

Query: 56  MAEQTEKAFLKQPKVFLXXXXXXXXXXXXXXXNRFYKSIGLNYKTPREAIEGTYIDKKCP 235
           MAEQTEKAFLKQPKVFL               NRF+KSIGL +KTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 236 FVGDVSIRGRIITGICHSAKMVRTIIVRRAYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 415
           F G VSIRGRII G CHSAKM RTIIVRR YLHFVKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 416 GDRVTIGQCRPLSKTVRFNVVKVVP 490
           GD V IGQCRPLSKTVRFNVVKV+P
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVVKVIP 145


>ref|NP_001060007.1| Os07g0565000 [Oryza sativa Japonica Group]
           gi|297603343|ref|NP_001053856.2| Os04g0613600 [Oryza
           sativa Japonica Group] gi|313103641|pdb|3IZ6|P Chain P,
           Localization Of The Small Subunit Ribosomal Proteins
           Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
           Translating 80s Ribosome gi|33146750|dbj|BAC79661.1|
           putative 40S ribosomal protein S11 [Oryza sativa
           Japonica Group] gi|50508298|dbj|BAD30107.1| putative 40S
           ribosomal protein S11 [Oryza sativa Japonica Group]
           gi|113611543|dbj|BAF21921.1| Os07g0565000 [Oryza sativa
           Japonica Group] gi|215768067|dbj|BAH00296.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|218195559|gb|EEC77986.1| hypothetical protein
           OsI_17372 [Oryza sativa Indica Group]
           gi|222637292|gb|EEE67424.1| hypothetical protein
           OsJ_24764 [Oryza sativa Japonica Group]
           gi|255675771|dbj|BAF15770.2| Os04g0613600 [Oryza sativa
           Japonica Group]
          Length = 161

 Score =  237 bits (604), Expect = 2e-60
 Identities = 117/145 (80%), Positives = 121/145 (83%)
 Frame = +2

Query: 56  MAEQTEKAFLKQPKVFLXXXXXXXXXXXXXXXNRFYKSIGLNYKTPREAIEGTYIDKKCP 235
           MAEQTEKAFLKQPKVFL               NRF+KSIGL +KTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 236 FVGDVSIRGRIITGICHSAKMVRTIIVRRAYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 415
           F G VSIRGRII G CHSAKM RTIIVRR YLHFVKKYQRYEKRHSNIPAHVSPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 416 GDRVTIGQCRPLSKTVRFNVVKVVP 490
           GD V IGQCRPLSKTVRFNV+KV+P
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIP 145


>ref|NP_194809.1| 40S ribosomal protein S11-2 [Arabidopsis thaliana]
           gi|11134432|sp|O65569.2|RS112_ARATH RecName: Full=40S
           ribosomal protein S11-2 gi|5708091|emb|CAA18213.2|
           ribosomal protein S11-like [Arabidopsis thaliana]
           gi|7269981|emb|CAB79798.1| ribosomal protein S11-like
           [Arabidopsis thaliana] gi|15028245|gb|AAK76711.1|
           putative ribosomal protein S11 [Arabidopsis thaliana]
           gi|20258899|gb|AAM14143.1| putative ribosomal protein
           S11 [Arabidopsis thaliana] gi|332660410|gb|AEE85810.1|
           40S ribosomal protein S11-2 [Arabidopsis thaliana]
          Length = 159

 Score =  237 bits (604), Expect = 2e-60
 Identities = 115/145 (79%), Positives = 124/145 (85%)
 Frame = +2

Query: 56  MAEQTEKAFLKQPKVFLXXXXXXXXXXXXXXXNRFYKSIGLNYKTPREAIEGTYIDKKCP 235
           MAEQTEKAFLKQPKVFL               NRF+K+IGL +KTPREAIEGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 236 FVGDVSIRGRIITGICHSAKMVRTIIVRRAYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 415
           F G VSIRGRI++G CHSAKM RTIIVRR YLHFVKKY+RYEKRHSNIPAHVSPCFRVKE
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 416 GDRVTIGQCRPLSKTVRFNVVKVVP 490
           GDRVTIGQCRPLSKTVRFNV+KV+P
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKVIP 145


>ref|XP_002285422.1| PREDICTED: 40S ribosomal protein S11 [Vitis vinifera]
           gi|296082102|emb|CBI21107.3| unnamed protein product
           [Vitis vinifera]
          Length = 160

 Score =  236 bits (602), Expect = 3e-60
 Identities = 115/160 (71%), Positives = 126/160 (78%)
 Frame = +2

Query: 56  MAEQTEKAFLKQPKVFLXXXXXXXXXXXXXXXNRFYKSIGLNYKTPREAIEGTYIDKKCP 235
           MAEQTEKAFLKQPKVFL               NRF+KSIGL +KTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 236 FVGDVSIRGRIITGICHSAKMVRTIIVRRAYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 415
           F G VSIRGRI+ G CHSAKM+RTIIVRR YLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGGVSIRGRILAGTCHSAKMMRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 416 GDRVTIGQCRPLSKTVRFNVVKVVPXXXXXXXXXXXFIAV 535
           GD V IGQCRPLSKTVRFNV+KV+P           F+A+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGGKKAFVAM 160


>gb|AFK49430.1| unknown [Lotus japonicus]
          Length = 159

 Score =  235 bits (600), Expect = 5e-60
 Identities = 112/145 (77%), Positives = 122/145 (84%)
 Frame = +2

Query: 56  MAEQTEKAFLKQPKVFLXXXXXXXXXXXXXXXNRFYKSIGLNYKTPREAIEGTYIDKKCP 235
           MAEQTEKAFLKQPKVFL               NRF+KSIGL +KTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 236 FVGDVSIRGRIITGICHSAKMVRTIIVRRAYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 415
           F G+VSIRGRI+ G CHSAKM RTIIVRR YLHF+KKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 416 GDRVTIGQCRPLSKTVRFNVVKVVP 490
           GD V IGQCRP+SKTVRFNV+KV+P
Sbjct: 121 GDHVIIGQCRPISKTVRFNVLKVIP 145