BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00006729
         (1586 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFO65948.1| RNA-dependent RNA polymerase [Alphacryptovirus JF...   644   0.0  
ref|YP_002364401.1| putative RNA-dependent RNA polymerase [Rapha...   642   0.0  
gb|AEJ07890.1| putative RNA-dependent RNA polymerase [Pepper cry...   637   e-180
dbj|BAA34783.1| RNA-dependent RNA polymerase [Pyrus pyrifolia]        585   e-165
ref|YP_006390091.1| RNA dependent RNA polymerase [Persimmon cryp...   580   e-163

>gb|AFO65948.1| RNA-dependent RNA polymerase [Alphacryptovirus JF-2012]
          Length = 478

 Score =  644 bits (1661), Expect = 0.0
 Identities = 311/476 (65%), Positives = 374/476 (78%)
 Frame = -2

Query: 1492 RSTLVGYDFRDFSQDFESTNQRHPHKVRREEAVTYVDELALELVKDINPVLYEQFLAGWS 1313
            R ++ GYD+ +F+QD   ++++HPH VRRE A TY D+ A + V   + + Y Q L GWS
Sbjct: 2    RPSITGYDYTNFTQDLLKSDRKHPHVVRRETATTYRDDFAFKEVVSFDRLAYIQRLEGWS 61

Query: 1312 RSYYLATKHLEEVYKFGYPNIPSTAIDTSVYLQCITAVKNGFCSLPTVRAYDVLTELDSV 1133
            RSYYL  KHLE + ++  PN+P TA++ +VY Q I  V+NG  SL  VRA+DVLTEL+ +
Sbjct: 62   RSYYLPEKHLEALLQYATPNVPCTALNLNVYCQAIQVVENGLRSLQPVRAFDVLTELNQI 121

Query: 1132 SFKPSSAAGYNYTGAKGPISGENHKRAIKIAKAVLWSAIAEDGEGIEHVISTSVPDVGYT 953
            S+K SSAAGY+Y GAKGPI GENHKR I  AKAVLWS + EDGEGI+H I TSVPDVGYT
Sbjct: 122  SYKQSSAAGYDYIGAKGPIDGENHKRTISRAKAVLWSVVKEDGEGIDHAIETSVPDVGYT 181

Query: 952  RTQLADLSEKTKVRQVWGRAFHYILLEGLVADPFIKAIAASETFIHAGQDPTITVPWLLS 773
            RTQLADL+EKTKVRQVWGRAFHYILLEGLVA PFI++I    +FIH G+DPT++VP  L+
Sbjct: 182  RTQLADLTEKTKVRQVWGRAFHYILLEGLVAQPFIQSIMEGPSFIHTGRDPTLSVPQSLA 241

Query: 772  TVAHTSKFIYSIDWKSFDATVSRFEINTAFDIIKDKVSFPNRETEQAFEITRQLFIHKKV 593
             V+   K+IYS+DWKSFDATV+RFEINT+FDIIK KV FPN ETEQAFEITRQLF+HKKV
Sbjct: 242  KVSSQCKYIYSLDWKSFDATVNRFEINTSFDIIKSKVIFPNYETEQAFEITRQLFLHKKV 301

Query: 592  AAPDGIIYSVHKGIPSGSYYTSLIGSIVNRLRIEYIWRSILGHGPKVCYTXXXXXXXXXX 413
            AAPDG IY  HKGIPSGSYYTS++GSIVNRLRIEYIWR   GHGP  C T          
Sbjct: 302  AAPDGYIYEAHKGIPSGSYYTSMVGSIVNRLRIEYIWRIATGHGPIHCETLVDDSLCGDD 361

Query: 412  XLILPSTMSQLVNPIGWYLNPSKTEYSTIPEGVTFLGRTFLGGLNTRDLKRCLRLLIYPE 233
              +  + ++ + N IGWY N  KTEYSTIPEGVTFLGRT  G LN+RDL +CLRLL+YPE
Sbjct: 362  IFVPATQLADIANRIGWYFNADKTEYSTIPEGVTFLGRTSTGNLNSRDLTKCLRLLVYPE 421

Query: 232  FPVETGRISAYRAKSIAEDAGNLSELLNKVAARLKRRYGVASEEEVPSYFKRYVAF 65
            +PV +GRISAYRA+SIA+D+G LS+LLN+VA RL+R YG+ASEEE+P+YFKRYV F
Sbjct: 422  YPVTSGRISAYRARSIADDSGGLSDLLNQVAIRLERSYGIASEEEIPAYFKRYVPF 477


>ref|YP_002364401.1| putative RNA-dependent RNA polymerase [Raphanus sativus cryptic virus
            3] gi|217039787|gb|ACJ76981.1| putative RNA-dependent RNA
            polymerase [Raphanus sativus cryptic virus 3]
          Length = 481

 Score =  642 bits (1657), Expect = 0.0
 Identities = 320/476 (67%), Positives = 370/476 (77%)
 Frame = -2

Query: 1492 RSTLVGYDFRDFSQDFESTNQRHPHKVRREEAVTYVDELALELVKDINPVLYEQFLAGWS 1313
            R+ L GY +  F  D E TNQRH + +RRE AVTY DE AL+ + D++   YEQ L GWS
Sbjct: 5    RNPLAGYVYTGFISDLEETNQRHTNVIRRETAVTYRDEFALQSILDLDYRQYEQHLQGWS 64

Query: 1312 RSYYLATKHLEEVYKFGYPNIPSTAIDTSVYLQCITAVKNGFCSLPTVRAYDVLTELDSV 1133
            RSYY   KH E + ++ YP+IP  AI   VY  CI  V+N F SLP VRAY VLT+LD V
Sbjct: 65   RSYYTPEKHQEAILQYSYPDIPVQAIKMDVYNDCIAQVQNEFRSLPNVRAYSVLTQLDLV 124

Query: 1132 SFKPSSAAGYNYTGAKGPISGENHKRAIKIAKAVLWSAIAEDGEGIEHVISTSVPDVGYT 953
             +K SSAAGY Y G KG     NH RAI  AKAVLWSAIA DGEGIEHVI TS PD+GYT
Sbjct: 125  KYKSSSAAGYGYQGTKGNPGELNHARAISRAKAVLWSAIAADGEGIEHVIKTSTPDIGYT 184

Query: 952  RTQLADLSEKTKVRQVWGRAFHYILLEGLVADPFIKAIAASETFIHAGQDPTITVPWLLS 773
            RTQL DL+EKTKVRQVWGRAFHYILLEGLVADPFI+A+  + TFIHAG+DPT++VP LLS
Sbjct: 185  RTQLTDLTEKTKVRQVWGRAFHYILLEGLVADPFIQAVMENNTFIHAGRDPTLSVPQLLS 244

Query: 772  TVAHTSKFIYSIDWKSFDATVSRFEINTAFDIIKDKVSFPNRETEQAFEITRQLFIHKKV 593
             +A TS +IYS+DWK FDATVSRFEI +AF IIK K  FP+RETE AFEIT+QLFIHKKV
Sbjct: 245  HIAETSDWIYSLDWKQFDATVSRFEIESAFTIIKSKTIFPDRETEDAFEITKQLFIHKKV 304

Query: 592  AAPDGIIYSVHKGIPSGSYYTSLIGSIVNRLRIEYIWRSILGHGPKVCYTXXXXXXXXXX 413
            AAPDG IY  HKGIPSGSYYTSL+GSIVNRLRIEY++R ILG GPK+C+T          
Sbjct: 305  AAPDGKIYFAHKGIPSGSYYTSLVGSIVNRLRIEYLYRLILGRGPKICHTLGDDSLVGDD 364

Query: 412  XLILPSTMSQLVNPIGWYLNPSKTEYSTIPEGVTFLGRTFLGGLNTRDLKRCLRLLIYPE 233
             LI+PS+   + N IGWY N  KTEYS IPE V+FLGR++ GGLN RDLKRCLRLL++PE
Sbjct: 365  ELIVPSSFGLIANRIGWYFNIEKTEYSRIPEMVSFLGRSYKGGLNVRDLKRCLRLLVFPE 424

Query: 232  FPVETGRISAYRAKSIAEDAGNLSELLNKVAARLKRRYGVASEEEVPSYFKRYVAF 65
            +PV +GRISAYRAKSIAED G +S+LLN+VAARLKR+YG+ASEEEVP YFKRY+ F
Sbjct: 425  YPVPSGRISAYRAKSIAEDCGGISDLLNRVAARLKRQYGLASEEEVPIYFKRYLPF 480


>gb|AEJ07890.1| putative RNA-dependent RNA polymerase [Pepper cryptic virus 1]
          Length = 479

 Score =  637 bits (1643), Expect = e-180
 Identities = 309/474 (65%), Positives = 363/474 (76%)
 Frame = -2

Query: 1492 RSTLVGYDFRDFSQDFESTNQRHPHKVRREEAVTYVDELALELVKDINPVLYEQFLAGWS 1313
            R TLVGYD+  F  D   +  RHPH V RE A TYVD+ A E ++  + +  E  L GWS
Sbjct: 3    RGTLVGYDYTQFQGDLVKSTHRHPHVVHREIATTYVDQYAYEHIETFSSLYPELILKGWS 62

Query: 1312 RSYYLATKHLEEVYKFGYPNIPSTAIDTSVYLQCITAVKNGFCSLPTVRAYDVLTELDSV 1133
            RSYYL  KHL  V  +  PN+P++ +  S+Y Q I + KNGF SLP V+A+DVLTE+D V
Sbjct: 63   RSYYLPEKHLAAVLNYSMPNVPASQLSQSLYRQAIESAKNGFISLPRVKAFDVLTEMDQV 122

Query: 1132 SFKPSSAAGYNYTGAKGPISGENHKRAIKIAKAVLWSAIAEDGEGIEHVISTSVPDVGYT 953
             FK SS+AGYNYTG KG I  ENH RAI IAKAVLWSAI +DGEGIEHVI TSVPDVGYT
Sbjct: 123  PFKSSSSAGYNYTGRKGLIGDENHSRAISIAKAVLWSAIKDDGEGIEHVIRTSVPDVGYT 182

Query: 952  RTQLADLSEKTKVRQVWGRAFHYILLEGLVADPFIKAIAASETFIHAGQDPTITVPWLLS 773
            RTQL DL EKTKVRQVWGRAFHYILLEGLVA PFI+ + + +TFIHAGQDP I+VP LLS
Sbjct: 183  RTQLTDLLEKTKVRQVWGRAFHYILLEGLVAYPFIQTVMSHKTFIHAGQDPLISVPRLLS 242

Query: 772  TVAHTSKFIYSIDWKSFDATVSRFEINTAFDIIKDKVSFPNRETEQAFEITRQLFIHKKV 593
             VA   K+IYS+DW  FDATVSRFEI+ AFDIIK  V FPN ETEQAFEITRQLFIHKKV
Sbjct: 243  DVALNCKWIYSLDWSQFDATVSRFEIHAAFDIIKSYVDFPNYETEQAFEITRQLFIHKKV 302

Query: 592  AAPDGIIYSVHKGIPSGSYYTSLIGSIVNRLRIEYIWRSILGHGPKVCYTXXXXXXXXXX 413
            A PDG IY  HKGIPSGSYYTSL+GSI+N LRI Y+WR + GH P+ C+T          
Sbjct: 303  AVPDGYIYESHKGIPSGSYYTSLVGSIINYLRINYLWRLLTGHPPQQCHTLGDDSLVGDN 362

Query: 412  XLILPSTMSQLVNPIGWYLNPSKTEYSTIPEGVTFLGRTFLGGLNTRDLKRCLRLLIYPE 233
              + P  + +  N +GW+ NP KT+YST+PE +TFLGRT++GGLN RDL +C+RLL+YPE
Sbjct: 363  SYVNPQAIEEAANKLGWHFNPDKTQYSTVPEEITFLGRTYVGGLNKRDLTKCIRLLVYPE 422

Query: 232  FPVETGRISAYRAKSIAEDAGNLSELLNKVAARLKRRYGVASEEEVPSYFKRYV 71
            +PVE+GRISAYRAKSIA+DAG LSE+LN++A +L+R YG ASEEEVP YFKRYV
Sbjct: 423  YPVESGRISAYRAKSIAQDAGGLSEVLNRIADKLRRIYGTASEEEVPIYFKRYV 476


>dbj|BAA34783.1| RNA-dependent RNA polymerase [Pyrus pyrifolia]
          Length = 477

 Score =  585 bits (1509), Expect = e-165
 Identities = 281/469 (59%), Positives = 350/469 (74%)
 Frame = -2

Query: 1477 GYDFRDFSQDFESTNQRHPHKVRREEAVTYVDELALELVKDINPVLYEQFLAGWSRSYYL 1298
            G++F D+S++ E+ NQ H HKVRRE   TYVD+ A   + D++P  + QF+ GWSRSYY 
Sbjct: 8    GFEFVDYSEELENLNQNHIHKVRRESNTTYVDKFAERELIDLHPEYHRQFIQGWSRSYYN 67

Query: 1297 ATKHLEEVYKFGYPNIPSTAIDTSVYLQCITAVKNGFCSLPTVRAYDVLTELDSVSFKPS 1118
              +H+E +  +G  NIP   +D ++Y  CI  VKNG  SLP V+A+DVLTEL+ VS+K S
Sbjct: 68   TERHMEALLNYGTRNIPVDNVDYNLYQGCIDTVKNGLRSLPRVKAFDVLTELNLVSYKSS 127

Query: 1117 SAAGYNYTGAKGPISGENHKRAIKIAKAVLWSAIAEDGEGIEHVISTSVPDVGYTRTQLA 938
            +AAGYNY GAKGP  G NHK+AI+ A+A +        EG+   I+T+VPDVGYTRTQL 
Sbjct: 128  TAAGYNYMGAKGPFDGYNHKQAIRRARATVGDVSDNGIEGLRRAITTAVPDVGYTRTQLT 187

Query: 937  DLSEKTKVRQVWGRAFHYILLEGLVADPFIKAIAASETFIHAGQDPTITVPWLLSTVAHT 758
            DL+EKTK+R VWGRAFHYIL+EG  ADP I+  + +++F H G+DP  +VP +LS  A  
Sbjct: 188  DLTEKTKIRNVWGRAFHYILIEGTSADPLIRMFSKTKSFYHIGRDPLDSVPDVLSETAGK 247

Query: 757  SKFIYSIDWKSFDATVSRFEINTAFDIIKDKVSFPNRETEQAFEITRQLFIHKKVAAPDG 578
            ++++Y+IDWK FDATVSRFEIN AFDII D + FPN  T  AFE++RQLFIHKK+AAPDG
Sbjct: 248  ARWLYAIDWKQFDATVSRFEINAAFDIIMDLIEFPNYPTYVAFELSRQLFIHKKIAAPDG 307

Query: 577  IIYSVHKGIPSGSYYTSLIGSIVNRLRIEYIWRSILGHGPKVCYTXXXXXXXXXXXLILP 398
             IY  HKGIPSGSY+TS+IGSI+NRLRIEY+WR I GHGP  CYT              P
Sbjct: 308  YIYWSHKGIPSGSYFTSIIGSIINRLRIEYLWRKITGHGPLACYTQGDDSLSCDDEFTPP 367

Query: 397  STMSQLVNPIGWYLNPSKTEYSTIPEGVTFLGRTFLGGLNTRDLKRCLRLLIYPEFPVET 218
               +++ N IGW LNP KTEYSTIP  V FLGRT LGGLNTR++KRCLRLLIYPE+PV++
Sbjct: 368  EKFAEIANQIGWVLNPEKTEYSTIPSEVHFLGRTMLGGLNTREIKRCLRLLIYPEYPVDS 427

Query: 217  GRISAYRAKSIAEDAGNLSELLNKVAARLKRRYGVASEEEVPSYFKRYV 71
            GRISAYRAKSI+ED G LSELLNK+  RL+ +YG+AS+EEVP YFKRYV
Sbjct: 428  GRISAYRAKSISEDVGRLSELLNKIERRLQGQYGIASDEEVPDYFKRYV 476


>ref|YP_006390091.1| RNA dependent RNA polymerase [Persimmon cryptic virus]
            gi|388877111|emb|CCH50609.1| RNA dependent RNA polymerase
            [Persimmon cryptic virus]
          Length = 477

 Score =  580 bits (1495), Expect = e-163
 Identities = 288/475 (60%), Positives = 345/475 (72%), Gaps = 1/475 (0%)
 Frame = -2

Query: 1495 ARSTLVGYDFRDFSQDFESTNQRHPHKVRREEAVTYVDELAL-ELVKDINPVLYEQFLAG 1319
            A  ++ GY+F DF    E  NQ H H VRRE  VTY DE AL EL+ D N  LYEQ L G
Sbjct: 2    ALRSITGYEFHDFQSSLELLNQTHIHIVRRESGVTYHDEFALCELLVD-NTRLYEQELEG 60

Query: 1318 WSRSYYLATKHLEEVYKFGYPNIPSTAIDTSVYLQCITAVKNGFCSLPTVRAYDVLTELD 1139
            WSRSYY   +H++ + ++  PN P   ID   Y Q +T V+    SLP VRA+DVLT+LD
Sbjct: 61   WSRSYYTGEQHMKAILQYSLPNTPIQDIDVGCYQQAMTNVQERLSSLPIVRAFDVLTQLD 120

Query: 1138 SVSFKPSSAAGYNYTGAKGPISGENHKRAIKIAKAVLWSAIAEDGEGIEHVISTSVPDVG 959
             VSF+ SSAAGY+YTGAKGP +  NH+RAI+ AKAVLWSAIA+DGEGIEHV+ +SVPDVG
Sbjct: 121  QVSFESSSAAGYDYTGAKGPKNEGNHERAIRRAKAVLWSAIAQDGEGIEHVLRSSVPDVG 180

Query: 958  YTRTQLADLSEKTKVRQVWGRAFHYILLEGLVADPFIKAIAASETFIHAGQDPTITVPWL 779
            YTRTQL DLSEKTKVR VWGRAFHYIL EG  ADP ++A     TF H GQDPT++VP++
Sbjct: 181  YTRTQLTDLSEKTKVRGVWGRAFHYILPEGTSADPLLQAFKEGGTFYHIGQDPTVSVPYI 240

Query: 778  LSTVAHTSKFIYSIDWKSFDATVSRFEINTAFDIIKDKVSFPNRETEQAFEITRQLFIHK 599
            LS  A    ++Y++DW SFDATVSRFEI+ AFD++K ++ FPN ETEQ +EI RQLFIHK
Sbjct: 241  LSDTAGKCAWLYALDWSSFDATVSRFEIHAAFDLLKQRIEFPNFETEQCYEICRQLFIHK 300

Query: 598  KVAAPDGIIYSVHKGIPSGSYYTSLIGSIVNRLRIEYIWRSILGHGPKVCYTXXXXXXXX 419
            K+AAPDG +Y  HKGIPSGSYYTS+IGSI+NRLRIEYIW  + GHGP +CYT        
Sbjct: 301  KIAAPDGKVYWAHKGIPSGSYYTSIIGSIINRLRIEYIWIKLRGHGPTICYTQGDDSLCG 360

Query: 418  XXXLILPSTMSQLVNPIGWYLNPSKTEYSTIPEGVTFLGRTFLGGLNTRDLKRCLRLLIY 239
                I P  ++ + NPIGW +NP+KT  +  PE +TFLGRT  GGLN RDL RCLRLLIY
Sbjct: 361  DDERIEPERIADIANPIGWLINPAKTATTRYPEYITFLGRTCYGGLNHRDLIRCLRLLIY 420

Query: 238  PEFPVETGRISAYRAKSIAEDAGNLSELLNKVAARLKRRYGVASEEEVPSYFKRY 74
            PE+PV +G ISAYRA SIAED G  S +LN +A RL R+YG  S EEVP   + Y
Sbjct: 421  PEYPVPSGAISAYRANSIAEDCGGTSSILNDIARRLTRKYGRVSHEEVPKELRVY 475