BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00006720
         (1012 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD24601.1| putative non-LTR retroelement reverse transcripta...    47   2e-07
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    45   2e-07
ref|XP_002454676.1| hypothetical protein SORBIDRAFT_04g035460 [S...    44   6e-07
ref|XP_002466618.1| hypothetical protein SORBIDRAFT_01g011130 [S...    45   2e-06
gb|AAT58770.1| putative polyprotein [Oryza sativa Japonica Group]      49   3e-06

>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1319

 Score = 47.4 bits (111), Expect(2) = 2e-07
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
 Frame = +3

Query: 3    LIHLRPNVVS-DNLIWLGSRNGIFTVKSAYHSIYRDSF-----SAQSSSFNNKVVKTIWN 164
            ++H RP + S D+  W G+ NG++TVKS Y    R++F      A      N +   +W+
Sbjct: 941  IMHQRPLISSEDSYCWAGTNNGLYTVKSGYERSSRETFKNLFKEADVYPSVNPLFDKVWS 1000

Query: 165  LKAEASIQLFIWK 203
            L+    I++F+WK
Sbjct: 1001 LETVPKIKVFMWK 1013



 Score = 34.7 bits (78), Expect(2) = 2e-07
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
 Frame = +2

Query: 290  LETDYHLFFDCEWIKKVWFASTAAVRIEAHNYIDSKQWIELFLKWINDEYEDLQHRGLYC 469
            +ET  HL F C + ++VW  S   ++  A  +  S          IN   ++ Q+ G+  
Sbjct: 1043 IETINHLLFQCPFARQVWALSL--IQAPATGFGTS------IFSNINHVIQNSQNFGIPR 1094

Query: 470  IV------LLYEIWKHRNGIRFEHVPSSMSTIWRNTYSTWNINVEA 589
             +      LL+EIWK+RN   F+    + S I    Y   N+ + A
Sbjct: 1095 HMRTVSPWLLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECNLWINA 1140


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
            (fragment)
          Length = 1365

 Score = 45.1 bits (105), Expect(2) = 2e-07
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
 Frame = +3

Query: 33   DNLIWLGSRNGIFTVKSAY--------HSIYRDSFSAQSSSFNNKVVKTIWNLKAEASIQ 188
            D+  WL S NG+++VK+ Y        H +Y++   A+     N +   IWNL     I+
Sbjct: 999  DSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQE---AKVKPSVNSLFDKIWNLHTAPKIR 1055

Query: 189  LFIWKLYFHYLPFCE*ISSKAFKGD 263
            +F+WK     +P  + + ++  + D
Sbjct: 1056 IFLWKALHGAIPVEDRLRTRGIRSD 1080



 Score = 36.6 bits (83), Expect(2) = 2e-07
 Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 10/160 (6%)
 Frame = +2

Query: 293  ETDYHLFFDCEWIKKVW---FASTAAVRIEAHNYIDSKQWIELFLKWINDEYEDLQHRGL 463
            ET  H+ F+C   ++VW     S+A        Y +  + I+L       +  DL H   
Sbjct: 1091 ETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDL------TQQNDLPHHLR 1144

Query: 464  YCIV-LLYEIWKHRNGIRFEHVPSSMSTIWRNTYSTWNINVEAFKIENREIVH------A 622
            +    +L+ +WK+RN + FE   S  +T+    Y  ++    A      +  H       
Sbjct: 1145 FVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQNDEKHLKITKWC 1204

Query: 623  PDFPNELTDSWFKVYFDAAYNKVKCQGAAGAICKDQDGNI 742
            P  P EL     K     A++K      A  + +D  G +
Sbjct: 1205 PPLPGEL-----KCNIGFAWSKQHHFSGASWVVRDSQGKV 1239


>ref|XP_002454676.1| hypothetical protein SORBIDRAFT_04g035460 [Sorghum bicolor]
           gi|241934507|gb|EES07652.1| hypothetical protein
           SORBIDRAFT_04g035460 [Sorghum bicolor]
          Length = 276

 Score = 43.9 bits (102), Expect(2) = 6e-07
 Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 2/156 (1%)
 Frame = +2

Query: 293 ETDYHLFFDCEWIKKVW-FASTAAVRIEAHNYIDSKQWIELFLKWINDEYEDLQHRGLYC 469
           E   H FF C+ ++KVW       +R++  N + + + +   L+    + ED+    L  
Sbjct: 102 EDGAHCFFKCKEVRKVWRELGLETLRLKLANLLSAVEVVAEILR----QREDI---CLAV 154

Query: 470 IVLLYEIWKHRNGIRF-EHVPSSMSTIWRNTYSTWNINVEAFKIENREIVHAPDFPNELT 646
            VL+++ W  RN +   E +PS+ +T+        NI  E  K+   +        +   
Sbjct: 155 FVLIWKWWSMRNKVNVGELMPSAQATVNAIRDMVQNILKEGCKMHQHQSFEVQQTWSPPA 214

Query: 647 DSWFKVYFDAAYNKVKCQGAAGAICKDQDGNIQSAG 754
           +   KV  D ++     +GA G + +  DG I  AG
Sbjct: 215 EGILKVNVDGSFLPRTSKGAWGFVVRGHDGAIVIAG 250



 Score = 36.6 bits (83), Expect(2) = 6e-07
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
 Frame = +3

Query: 33  DNLIWLGSRNGIFTVKSAYHSI----------YRDSFSAQSSSFNNKVVKTIWNLKAEAS 182
           D + W   R G+F+VKSAYH +           R   S+QS     ++ K +W +     
Sbjct: 5   DIVAWHFVRKGVFSVKSAYHVLEDEAESKLVRQRGESSSQSLGSRKQMWKKLWRVPRPPK 64

Query: 183 IQLFIWKLYFHYLPFCE*ISSKAFKGD 263
           I+  +W++  + L     I SK    D
Sbjct: 65  IKQCVWRVAHNSLAHKMNIKSKKISLD 91


>ref|XP_002466618.1| hypothetical protein SORBIDRAFT_01g011130 [Sorghum bicolor]
           gi|241920472|gb|EER93616.1| hypothetical protein
           SORBIDRAFT_01g011130 [Sorghum bicolor]
          Length = 463

 Score = 45.4 bits (106), Expect(2) = 2e-06
 Identities = 49/206 (23%), Positives = 79/206 (38%), Gaps = 10/206 (4%)
 Frame = +2

Query: 305 HLFFDCEWIKKVW-FASTAAVRIEAHNYIDSKQWIELFLKWINDEYEDLQHRGLYCIVLL 481
           HLFF C   ++VW     +  R    N+      +E  L+         + R L  IV L
Sbjct: 195 HLFFKCGMARQVWELLGLSTEREVLANFYTPIDVVEFILR-------ASESRKLMMIVAL 247

Query: 482 YEIWKHRNGIRFEHVPSSMSTIWRNTYSTWNINVEAFKIENREIVHAPDFPNELTD-SW- 655
           +  W  RN IR E    S  T+ R       + +   ++   E    P    E     W 
Sbjct: 248 WYTWSERNAIREEDRRRSPQTLAR------CVELYVQEMRTTETTANPTANQEQQQYKWS 301

Query: 656 ------FKVYFDAAYNKVKCQGAAGAICKDQDGNIQSAGFTRFK-ARTAQQAEFLAAEMA 814
                  K+  D +++     G+ G + +D +G++  +G  R     T  QAE +A    
Sbjct: 302 KPPVDILKLNCDGSFSPETRAGSWGVLIRDHEGDVIMSGRGRVNHLMTPMQAELIACLQG 361

Query: 815 CKLLKKISPGDTILLGDNQSVINSMK 892
            +L   +  G  IL  D   V+ ++K
Sbjct: 362 VQLAANLGIGRLILETDALEVVKAIK 387



 Score = 33.5 bits (75), Expect(2) = 2e-06
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
 Frame = +3

Query: 30  SDNLIWLGSRNGIFTVKSAYHSIYRDSFSAQSSSFNNK---------VVKTIWNLKAEAS 182
           S+ + W   ++G+F+VKSAY  + RD++    +S   +         + K +W L     
Sbjct: 95  SNMVAWHYDKHGVFSVKSAY-KVARDTYIRNHTSQGQQGGSNPGPLSLWKRVWKLSCPNK 153

Query: 183 IQLFIWKLYFHYLP 224
           I+ F+W+   +  P
Sbjct: 154 IKHFLWRFLHNSHP 167


>gb|AAT58770.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1419

 Score = 48.5 bits (114), Expect(2) = 3e-06
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 5/127 (3%)
 Frame = +2

Query: 275 LMFKALETDYHLFFDCEWIKKVWFASTAAVRIEAHNYIDSKQWIELFLKWINDEYEDLQH 454
           L F+ LET  HLF +C + ++VW       R +   ++ +   +  + +   DE E LQ 
Sbjct: 327 LCFRNLETVQHLFMECPFTQQVWRDIGRKFRPQRFLHVTTDNTLLNWWREQTDEAEKLQQ 386

Query: 455 RGLYCIVL--LYEIWKHRNGIRF---EHVPSSMSTIWRNTYSTWNINVEAFKIENREIVH 619
           +GL   VL  L+EIW  RN   F   E  PS++++   +    W       ++ N+  +H
Sbjct: 387 KGLRSAVLTTLWEIWMERNDRIFRGKESTPSALASKIIDELRLW-------EMSNKPHIH 439

Query: 620 APDFPNE 640
             D  +E
Sbjct: 440 DKDAKSE 446



 Score = 29.3 bits (64), Expect(2) = 3e-06
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +3

Query: 33  DNLIWLGSRNGIFTVKSAYHSIYRDSFSAQSSSFNNKVVKTIWNLKAEASIQLFIWKL 206
           D ++W  S +G++T KSAY   +     + S+       + +W   A    + F W L
Sbjct: 253 DTILWRWSASGLYTAKSAYVMQFMGKTFSDST-------ELVWETWAPGKHKFFAWLL 303