BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00006533
         (417 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002509755.1| Transcription initiation factor IIE subunit ...   166   2e-39
emb|CBI17573.3| unnamed protein product [Vitis vinifera]              164   7e-39
ref|XP_002283557.1| PREDICTED: general transcription factor IIE ...   163   2e-38
ref|XP_004146528.1| PREDICTED: general transcription factor IIE ...   160   1e-37
ref|XP_002299546.1| predicted protein [Populus trichocarpa] gi|2...   157   1e-36

>ref|XP_002509755.1| Transcription initiation factor IIE subunit beta, putative [Ricinus
           communis] gi|223549654|gb|EEF51142.1| Transcription
           initiation factor IIE subunit beta, putative [Ricinus
           communis]
          Length = 282

 Score =  166 bits (420), Expect = 2e-39
 Identities = 85/136 (62%), Positives = 100/136 (73%)
 Frame = -1

Query: 408 LQESLNKFKQQQGKVQSTLTSIAXXXXXXXXXXXXXXXXXXXXXXXPVAVVQKAPSPAVK 229
           LQE LNKFK+QQ K Q+TLTSIA                          ++ + P PAVK
Sbjct: 3   LQEQLNKFKRQQEKCQTTLTSIAAKAGSHKPSITPKIVAPSP-------IIPRTPGPAVK 55

Query: 228 FSNDTERLQHINSIRKSPVGAQIKRVIDLLYDTRKAFTAEQINEACYVDIHGNKGVFDSL 49
           FSNDTERLQHI+SIRK+PVGAQIKRVIDLL++TR+AFT EQINEACYVD++ NK VFDSL
Sbjct: 56  FSNDTERLQHIHSIRKAPVGAQIKRVIDLLFETRQAFTPEQINEACYVDVNSNKAVFDSL 115

Query: 48  RNNPKVRYEGKYFSYK 1
           RNNPKV Y+G++FSYK
Sbjct: 116 RNNPKVHYDGRHFSYK 131


>emb|CBI17573.3| unnamed protein product [Vitis vinifera]
          Length = 178

 Score =  164 bits (415), Expect = 7e-39
 Identities = 90/137 (65%), Positives = 98/137 (71%)
 Frame = -1

Query: 411 SLQESLNKFKQQQGKVQSTLTSIAXXXXXXXXXXXXXXXXXXXXXXXPVAVVQKAPSPAV 232
           +LQESL KFK+QQ K QSTLTSIA                         A   K P+PAV
Sbjct: 2   ALQESLAKFKKQQEKCQSTLTSIAAKAVSSKPSVPQNFTP---------AAPTKPPTPAV 52

Query: 231 KFSNDTERLQHINSIRKSPVGAQIKRVIDLLYDTRKAFTAEQINEACYVDIHGNKGVFDS 52
           KFSNDTERLQHINSIRK+PVGAQIKRVIDLL +TR+AFT EQINEACYVD+  NK VFDS
Sbjct: 53  KFSNDTERLQHINSIRKAPVGAQIKRVIDLLLETRQAFTPEQINEACYVDMTANKAVFDS 112

Query: 51  LRNNPKVRYEGKYFSYK 1
           LRNNPKV Y+GK FSYK
Sbjct: 113 LRNNPKVNYDGKRFSYK 129


>ref|XP_002283557.1| PREDICTED: general transcription factor IIE subunit 2 [Vitis
           vinifera] gi|297742556|emb|CBI34705.3| unnamed protein
           product [Vitis vinifera]
          Length = 285

 Score =  163 bits (412), Expect = 2e-38
 Identities = 89/137 (64%), Positives = 98/137 (71%)
 Frame = -1

Query: 411 SLQESLNKFKQQQGKVQSTLTSIAXXXXXXXXXXXXXXXXXXXXXXXPVAVVQKAPSPAV 232
           +LQESL KFK+QQ K QSTLTSIA                         A   K P+PAV
Sbjct: 2   ALQESLAKFKKQQEKCQSTLTSIAAKAGSSKPTVPQKFTP---------AAPTKPPTPAV 52

Query: 231 KFSNDTERLQHINSIRKSPVGAQIKRVIDLLYDTRKAFTAEQINEACYVDIHGNKGVFDS 52
           KFSNDTERLQHINSIRK+PVGAQIKRVIDLL +TR+AFT EQINEACYVD + NK VFDS
Sbjct: 53  KFSNDTERLQHINSIRKAPVGAQIKRVIDLLLETRQAFTPEQINEACYVDTNANKAVFDS 112

Query: 51  LRNNPKVRYEGKYFSYK 1
           LRNNPKV Y+GK F+YK
Sbjct: 113 LRNNPKVSYDGKRFAYK 129


>ref|XP_004146528.1| PREDICTED: general transcription factor IIE subunit 2-like [Cucumis
           sativus] gi|449499921|ref|XP_004160955.1| PREDICTED:
           general transcription factor IIE subunit 2-like [Cucumis
           sativus]
          Length = 277

 Score =  160 bits (404), Expect = 1e-37
 Identities = 84/137 (61%), Positives = 99/137 (72%)
 Frame = -1

Query: 411 SLQESLNKFKQQQGKVQSTLTSIAXXXXXXXXXXXXXXXXXXXXXXXPVAVVQKAPSPAV 232
           +LQE L++FK+QQ + QSTL+ IA                         A + + P+PAV
Sbjct: 2   ALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAP--------AASIARPPAPAV 53

Query: 231 KFSNDTERLQHINSIRKSPVGAQIKRVIDLLYDTRKAFTAEQINEACYVDIHGNKGVFDS 52
           KFSNDTERLQHINSIRKSPVGAQIKRVIDLL +TR+AFT EQINEACYVDI+ NK V+DS
Sbjct: 54  KFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDS 113

Query: 51  LRNNPKVRYEGKYFSYK 1
           LRNNPKV Y+G+ FSYK
Sbjct: 114 LRNNPKVHYDGRRFSYK 130


>ref|XP_002299546.1| predicted protein [Populus trichocarpa] gi|222846804|gb|EEE84351.1|
           predicted protein [Populus trichocarpa]
          Length = 284

 Score =  157 bits (396), Expect = 1e-36
 Identities = 83/137 (60%), Positives = 97/137 (70%)
 Frame = -1

Query: 411 SLQESLNKFKQQQGKVQSTLTSIAXXXXXXXXXXXXXXXXXXXXXXXPVAVVQKAPSPAV 232
           +LQE L++FK+QQ K QSTLTSIA                         +   + P+PAV
Sbjct: 2   ALQEQLDRFKKQQEKCQSTLTSIAKSRPSKSSLTQKTVAVAPAP-----STSARTPAPAV 56

Query: 231 KFSNDTERLQHINSIRKSPVGAQIKRVIDLLYDTRKAFTAEQINEACYVDIHGNKGVFDS 52
           KFSNDTERLQHINSIRK+P GAQIKRVIDLL +TR+AFT EQIN+ CYVD++ NK VFDS
Sbjct: 57  KFSNDTERLQHINSIRKAPAGAQIKRVIDLLLETRQAFTPEQINDHCYVDMNSNKAVFDS 116

Query: 51  LRNNPKVRYEGKYFSYK 1
           LRNNPKV Y+GK FSYK
Sbjct: 117 LRNNPKVHYDGKRFSYK 133