BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00006346
         (603 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...   181   2e-57
ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...   178   6e-57
ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...   178   4e-56
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...   168   7e-56
ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|2...   187   7e-56

>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score =  181 bits (458), Expect(2) = 2e-57
 Identities = 82/154 (53%), Positives = 116/154 (75%)
 Frame = +3

Query: 3   TGFRNYYKKMNEESATDATVKGVTDLVLESDWNDDVVRKLGELNLVLSEDFLLRVFRALR 182
           TG  ++Y +M +++A D+ V+ V D+VL SDW++DV  KL EL + LS++F++RV + LR
Sbjct: 176 TGLTHFYNRMLQQNAMDSVVQKVVDIVLGSDWSNDVPGKLEELGIALSDNFVIRVLKELR 235

Query: 183 QHPLKAFSIFRWAEKHVGYNHDAVTYNGILRVLGQEDSIKEFWSVVKELKSAGHDMDIDT 362
             PLKA S F W      Y+H+ V+YN I RVLG++DSI+ FW V++E+K A H++DIDT
Sbjct: 236 NSPLKALSFFHWVGCRPDYDHNTVSYNAIARVLGRDDSIEAFWGVIEEMKHANHEIDIDT 295

Query: 363 YIKLSRHFQKVRLMNDAVELYELMMDGPFKPSAQ 464
           YIK+SR FQK ++M +AV+LYELMMDGP+KPS Q
Sbjct: 296 YIKISRQFQKSKMMGEAVKLYELMMDGPYKPSLQ 329



 Score = 67.8 bits (164), Expect(2) = 2e-57
 Identities = 29/46 (63%), Positives = 41/46 (89%)
 Frame = +2

Query: 464 NCNTLLKQLSLTDTPDLSLVFRVVKKYEASGHTLSKAVYDGIHRSL 601
           +C+ LL+ ++ +D PDLSLV+RV KK+EA+G++LSKA+YDGIHRSL
Sbjct: 330 DCSVLLRTIAASDNPDLSLVYRVAKKFEATGYSLSKAMYDGIHRSL 375



 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 34/120 (28%), Positives = 61/120 (50%)
 Frame = +3

Query: 63  KGVTDLVLESDWNDDVVRKLGELNLVLSEDFLLRVFRALRQHPLKAFSIFRWAEKHVGYN 242
           + +  LV  +DW++ +  +L  LN  L+ + ++ V + L + P KA   F WA    G  
Sbjct: 59  QSLLQLVSTNDWSEMLETELETLNPTLTHETVVYVLKRLDKQPQKASEFFNWASGKNGST 118

Query: 243 HDAVTYNGILRVLGQEDSIKEFWSVVKELKSAGHDMDIDTYIKLSRHFQKVRLMNDAVEL 422
             +  Y+ +LR+  Q +S+K FW  ++ +K  G  +D +TY  +    +K +   DA  L
Sbjct: 119 QSSSIYSMLLRIFVQNESMKLFWITLRLMKERGFYLDEETYKTILGVLRKSKKAADATGL 178


>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score =  178 bits (452), Expect(2) = 6e-57
 Identities = 81/152 (53%), Positives = 117/152 (76%)
 Frame = +3

Query: 9   FRNYYKKMNEESATDATVKGVTDLVLESDWNDDVVRKLGELNLVLSEDFLLRVFRALRQH 188
           F++++ +M EE+A D+ VK V  +V  ++W+++V ++L  + ++L+++F++RV + LR +
Sbjct: 183 FKHFFDRMVEENAMDSVVKNVVSVVSATEWSNEVEKELEGMGILLTDNFVIRVLKELRNY 242

Query: 189 PLKAFSIFRWAEKHVGYNHDAVTYNGILRVLGQEDSIKEFWSVVKELKSAGHDMDIDTYI 368
           PLKA   F WA K   Y  + +TYN I RVLG++DSI EFWSVV+E+K+AGH+MDIDTYI
Sbjct: 243 PLKALQFFNWAGKCERYECNTITYNAIARVLGRDDSIGEFWSVVEEMKNAGHEMDIDTYI 302

Query: 369 KLSRHFQKVRLMNDAVELYELMMDGPFKPSAQ 464
           K+SR FQK +LM DAV+LYE MMDGPFKPS Q
Sbjct: 303 KISRQFQKNKLMGDAVKLYEFMMDGPFKPSVQ 334



 Score = 68.2 bits (165), Expect(2) = 6e-57
 Identities = 31/46 (67%), Positives = 41/46 (89%)
 Frame = +2

Query: 464 NCNTLLKQLSLTDTPDLSLVFRVVKKYEASGHTLSKAVYDGIHRSL 601
           +C+ LL+ +S ++ PDL+LVFRVV KYEA+G++LSKAVYDGIHRSL
Sbjct: 335 DCSMLLRSISASNYPDLNLVFRVVNKYEATGNSLSKAVYDGIHRSL 380



 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 38/134 (28%), Positives = 75/134 (55%)
 Frame = +3

Query: 15  NYYKKMNEESATDATVKGVTDLVLESDWNDDVVRKLGELNLVLSEDFLLRVFRALRQHPL 194
           N +KK+   S   + V    +L+  +DW+ ++  +L   + +L+ + ++ V + L + P 
Sbjct: 52  NIHKKLYSSSKPSSLV----ELLSVNDWSPELETQLENSSPLLTHETVIYVLKKLDKDPH 107

Query: 195 KAFSIFRWAEKHVGYNHDAVTYNGILRVLGQEDSIKEFWSVVKELKSAGHDMDIDTYIKL 374
           KA+  F W     G+   +  Y+ +LR+L ++DS+K FW  ++++K  G   D +TY+ +
Sbjct: 108 KAWDFFNWVCDRNGFKPSSPLYSLMLRILVKKDSMKNFWITLRKMKEQGFYTDEETYLTI 167

Query: 375 SRHFQKVRLMNDAV 416
              F+K R+ +DAV
Sbjct: 168 LGVFRKERMDSDAV 181


>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score =  178 bits (451), Expect(2) = 4e-56
 Identities = 83/150 (55%), Positives = 113/150 (75%)
 Frame = +3

Query: 15  NYYKKMNEESATDATVKGVTDLVLESDWNDDVVRKLGELNLVLSEDFLLRVFRALRQHPL 194
           ++Y +M +E+A D  VK V +LV  S W+ +V +KLGEL    S++F+L V R LR +PL
Sbjct: 187 HFYNRMVQENAMDEVVKKVVELVTMSVWSSEVEKKLGELKNSFSDNFVLHVLRELRGYPL 246

Query: 195 KAFSIFRWAEKHVGYNHDAVTYNGILRVLGQEDSIKEFWSVVKELKSAGHDMDIDTYIKL 374
           KA   F+W  +  GY H ++TYN I RVLG++DSI EFWS+V+E+KS GH+MDIDTYIK+
Sbjct: 247 KALRFFQWVGECPGYEHSSITYNVIARVLGRDDSIGEFWSMVEEMKSKGHEMDIDTYIKI 306

Query: 375 SRHFQKVRLMNDAVELYELMMDGPFKPSAQ 464
           SR FQK +++ DAV+LYE+MMDGP+KPS Q
Sbjct: 307 SRQFQKNKMLEDAVKLYEIMMDGPYKPSVQ 336



 Score = 65.9 bits (159), Expect(2) = 4e-56
 Identities = 30/46 (65%), Positives = 38/46 (82%)
 Frame = +2

Query: 464 NCNTLLKQLSLTDTPDLSLVFRVVKKYEASGHTLSKAVYDGIHRSL 601
           +C  LL+ +SL+  PDL+LVFRV +KYEA G++L KAVYDGIHRSL
Sbjct: 337 DCTMLLRSISLSSNPDLALVFRVTEKYEAVGNSLCKAVYDGIHRSL 382



 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 34/118 (28%), Positives = 72/118 (61%)
 Frame = +3

Query: 69  VTDLVLESDWNDDVVRKLGELNLVLSEDFLLRVFRALRQHPLKAFSIFRWAEKHVGYNHD 248
           + +LVLE+DW+D++  +L + + VL+ + ++ V + L + P + ++ F W  +  G+   
Sbjct: 68  IVELVLENDWSDELESELEKSSSVLTHETVIYVLKKLDKDPQRTWNFFNWVTEKNGFRPS 127

Query: 249 AVTYNGILRVLGQEDSIKEFWSVVKELKSAGHDMDIDTYIKLSRHFQKVRLMNDAVEL 422
           +  Y+ ILR L   +S+K+FW  ++++K  G  +D +TY+ +   F+K ++ ++ V L
Sbjct: 128 SAMYSLILRSLVHGESMKQFWVTIRKMKEQGFCIDKETYLTILGVFKKGKMASEEVAL 185


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score =  168 bits (426), Expect(2) = 7e-56
 Identities = 75/150 (50%), Positives = 108/150 (72%)
 Frame = +3

Query: 15  NYYKKMNEESATDATVKGVTDLVLESDWNDDVVRKLGELNLVLSEDFLLRVFRALRQHPL 194
           ++Y +M EE+A  + V  V  ++  S+W D+VV +L +L + LS++F++RV + LR+ PL
Sbjct: 186 HFYNRMLEENAMQSVVSNVVGIISRSEWGDEVVGELAKLEIQLSDNFVIRVLKELRKTPL 245

Query: 195 KAFSIFRWAEKHVGYNHDAVTYNGILRVLGQEDSIKEFWSVVKELKSAGHDMDIDTYIKL 374
           KA+  F W  K  GY HD VTYN + RVL + +SI+EFWSV++E+K  GH++DIDTYIK+
Sbjct: 246 KAYKFFHWVGKQSGYEHDTVTYNAVARVLPRAESIEEFWSVIEEMKRVGHELDIDTYIKI 305

Query: 375 SRHFQKVRLMNDAVELYELMMDGPFKPSAQ 464
           +R  Q+ R+M DAV+LYELMMDG  KP  Q
Sbjct: 306 TRQLQRNRMMEDAVKLYELMMDGSCKPLVQ 335



 Score = 74.7 bits (182), Expect(2) = 7e-56
 Identities = 34/49 (69%), Positives = 40/49 (81%)
 Frame = +2

Query: 455 LSSNCNTLLKQLSLTDTPDLSLVFRVVKKYEASGHTLSKAVYDGIHRSL 601
           L  +CN LLK +S  D P+L LVFRV KKYE++GHTLSKA+YDGIHRSL
Sbjct: 333 LVQDCNMLLKSISANDKPNLDLVFRVAKKYESTGHTLSKAIYDGIHRSL 381



 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 35/126 (27%), Positives = 69/126 (54%)
 Frame = +3

Query: 45  ATDATVKGVTDLVLESDWNDDVVRKLGELNLVLSEDFLLRVFRALRQHPLKAFSIFRWAE 224
           +T      + +L+L +DW+  +  KL      +  + +L V + L ++P KA   F W  
Sbjct: 59  STKPKPNSIVELLLTNDWSQALELKLENRFPSMPHETVLYVIKRLDKNPEKASCFFNWVC 118

Query: 225 KHVGYNHDAVTYNGILRVLGQEDSIKEFWSVVKELKSAGHDMDIDTYIKLSRHFQKVRLM 404
           K V +      Y+ I+R+L  +D++K+FW  ++ +K  G  +D +TY+ +S  F++ ++ 
Sbjct: 119 KKVWFRPSCSVYSLIVRILAAKDTMKQFWVTLRMMKENGFFLDEETYLTISVGFKREKMD 178

Query: 405 NDAVEL 422
           +D+V L
Sbjct: 179 SDSVAL 184


>ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|222868635|gb|EEF05766.1|
           predicted protein [Populus trichocarpa]
          Length = 476

 Score =  187 bits (474), Expect(2) = 7e-56
 Identities = 82/151 (54%), Positives = 118/151 (78%)
 Frame = +3

Query: 12  RNYYKKMNEESATDATVKGVTDLVLESDWNDDVVRKLGELNLVLSEDFLLRVFRALRQHP 191
           +++Y +M +E+A D  VK V  ++LE +WN +V +KL  + +VL+++F++RV + LR +P
Sbjct: 33  KHFYDRMIDENAKDNVVKDVVRIILEREWNKEVEKKLVGMRIVLTDNFVIRVLKELRSYP 92

Query: 192 LKAFSIFRWAEKHVGYNHDAVTYNGILRVLGQEDSIKEFWSVVKELKSAGHDMDIDTYIK 371
           +KA   F+W ++  GY H+ VTYN ++RVLG++DSI EFWSVV E+K+AG++MDIDTYIK
Sbjct: 93  VKALRFFQWVDRREGYQHNTVTYNALVRVLGRDDSIGEFWSVVDEMKNAGYEMDIDTYIK 152

Query: 372 LSRHFQKVRLMNDAVELYELMMDGPFKPSAQ 464
           +SR FQK++LM DAV LYE MMDGPFKPS Q
Sbjct: 153 ISRQFQKIKLMEDAVRLYEFMMDGPFKPSVQ 183



 Score = 56.2 bits (134), Expect(2) = 7e-56
 Identities = 25/45 (55%), Positives = 36/45 (80%)
 Frame = +2

Query: 464 NCNTLLKQLSLTDTPDLSLVFRVVKKYEASGHTLSKAVYDGIHRS 598
           +C  LL+ ++ +D PDL LV RVV  Y+A+G++LSK+VYDG+HRS
Sbjct: 184 DCYILLRSVAASDNPDLDLVSRVVDGYKATGNSLSKSVYDGMHRS 228