BLASTX nr result
ID: Coptis21_contig00006337
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00006337
(851 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Me... 94 9e-31
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ... 96 2e-30
ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|2... 94 1e-29
emb|CBI21137.3| unnamed protein product [Vitis vinifera] 92 6e-29
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub... 92 6e-29
>ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase
subunit beta [Medicago truncatula]
Length = 1237
Score = 94.4 bits (233), Expect(3) = 9e-31
Identities = 47/67 (70%), Positives = 55/67 (82%)
Frame = -1
Query: 848 GYNQEDSLVMNRAS*EHGMFRIEHIHCYKVEVKNKEILETKRMKPKDKIDFGKMPSKIGR 669
GYNQEDSLVMNRAS + GMFR EHI YK E++NKE E KR KP+D ++FGK+ SKIGR
Sbjct: 856 GYNQEDSLVMNRASLQRGMFRSEHIRSYKAEIENKESSE-KRKKPEDIVNFGKIQSKIGR 914
Query: 668 VDSLDED 648
VDSLD+D
Sbjct: 915 VDSLDDD 921
Score = 54.3 bits (129), Expect(3) = 9e-31
Identities = 30/44 (68%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Frame = -3
Query: 591 TDRSIKLNHTERGKVQEVKLSVNDEGTNFAAFSLQQV-CDVYGD 463
TD SIKL HTERG VQ+V LS NDEG NFA SL+QV V GD
Sbjct: 945 TDHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGD 988
Score = 32.0 bits (71), Expect(3) = 9e-31
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 646 PFIGGNLQGGVIVIDKCAD 590
PF+G NLQ G I+I +CAD
Sbjct: 924 PFVGANLQSGDIIIGRCAD 942
>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
subunit, putative [Ricinus communis]
Length = 1203
Score = 96.3 bits (238), Expect(3) = 2e-30
Identities = 48/67 (71%), Positives = 55/67 (82%)
Frame = -1
Query: 848 GYNQEDSLVMNRAS*EHGMFRIEHIHCYKVEVKNKEILETKRMKPKDKIDFGKMPSKIGR 669
GYNQEDSLVMNRAS E GMFR EHI YK +V NKE+L+ KR K D ++FGK+PSKIGR
Sbjct: 822 GYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKELLD-KRRKYDDNVNFGKIPSKIGR 880
Query: 668 VDSLDED 648
VDSLD+D
Sbjct: 881 VDSLDDD 887
Score = 52.4 bits (124), Expect(3) = 2e-30
Identities = 26/36 (72%), Positives = 28/36 (77%)
Frame = -3
Query: 588 DRSIKLNHTERGKVQEVKLSVNDEGTNFAAFSLQQV 481
D SIKL HTERG VQ+V LS NDEG NFA SL+QV
Sbjct: 912 DHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQV 947
Score = 31.2 bits (69), Expect(3) = 2e-30
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 646 PFIGGNLQGGVIVIDKCAD 590
PFIG NLQ G IVI +CA+
Sbjct: 890 PFIGANLQSGDIVIGRCAE 908
>ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|222865766|gb|EEF02897.1|
predicted protein [Populus trichocarpa]
Length = 1160
Score = 93.6 bits (231), Expect(3) = 1e-29
Identities = 48/67 (71%), Positives = 53/67 (79%)
Frame = -1
Query: 848 GYNQEDSLVMNRAS*EHGMFRIEHIHCYKVEVKNKEILETKRMKPKDKIDFGKMPSKIGR 669
GYNQEDSLVMNRAS E GMFR EHI YK EV NKE+ + KR K +D I FGK+ SKIGR
Sbjct: 779 GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKELTD-KRRKSEDSITFGKIQSKIGR 837
Query: 668 VDSLDED 648
VDSLD+D
Sbjct: 838 VDSLDDD 844
Score = 52.0 bits (123), Expect(3) = 1e-29
Identities = 25/36 (69%), Positives = 28/36 (77%)
Frame = -3
Query: 588 DRSIKLNHTERGKVQEVKLSVNDEGTNFAAFSLQQV 481
D S+KL HTERG VQ+V LS NDEG NFA SL+QV
Sbjct: 869 DHSVKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQV 904
Score = 31.6 bits (70), Expect(3) = 1e-29
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 646 PFIGGNLQGGVIVIDKCAD 590
PFIG N+Q G IVI KCA+
Sbjct: 847 PFIGANMQSGDIVIGKCAE 865
>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
Length = 1220
Score = 92.4 bits (228), Expect(3) = 6e-29
Identities = 48/67 (71%), Positives = 52/67 (77%)
Frame = -1
Query: 848 GYNQEDSLVMNRAS*EHGMFRIEHIHCYKVEVKNKEILETKRMKPKDKIDFGKMPSKIGR 669
GYNQEDSLVMNRAS E GMFR EHI YK EV N E L+ KR K +D + FGKM SKIGR
Sbjct: 839 GYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKR-KSEDSVHFGKMQSKIGR 897
Query: 668 VDSLDED 648
VDSLD+D
Sbjct: 898 VDSLDDD 904
Score = 50.8 bits (120), Expect(3) = 6e-29
Identities = 24/36 (66%), Positives = 28/36 (77%)
Frame = -3
Query: 588 DRSIKLNHTERGKVQEVKLSVNDEGTNFAAFSLQQV 481
D SIKL HTERG VQ+V +S ND+G NFA SL+QV
Sbjct: 929 DHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQV 964
Score = 31.2 bits (69), Expect(3) = 6e-29
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 646 PFIGGNLQGGVIVIDKCAD 590
PFIG NLQ G IVI +CA+
Sbjct: 907 PFIGANLQNGDIVIGRCAE 925
>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
vinifera]
Length = 1198
Score = 92.4 bits (228), Expect(3) = 6e-29
Identities = 48/67 (71%), Positives = 52/67 (77%)
Frame = -1
Query: 848 GYNQEDSLVMNRAS*EHGMFRIEHIHCYKVEVKNKEILETKRMKPKDKIDFGKMPSKIGR 669
GYNQEDSLVMNRAS E GMFR EHI YK EV N E L+ KR K +D + FGKM SKIGR
Sbjct: 817 GYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKR-KSEDSVHFGKMQSKIGR 875
Query: 668 VDSLDED 648
VDSLD+D
Sbjct: 876 VDSLDDD 882
Score = 50.8 bits (120), Expect(3) = 6e-29
Identities = 24/36 (66%), Positives = 28/36 (77%)
Frame = -3
Query: 588 DRSIKLNHTERGKVQEVKLSVNDEGTNFAAFSLQQV 481
D SIKL HTERG VQ+V +S ND+G NFA SL+QV
Sbjct: 907 DHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQV 942
Score = 31.2 bits (69), Expect(3) = 6e-29
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 646 PFIGGNLQGGVIVIDKCAD 590
PFIG NLQ G IVI +CA+
Sbjct: 885 PFIGANLQNGDIVIGRCAE 903