BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00006253
         (591 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528160.1| pentatricopeptide repeat-containing protein,...   266   3e-69
emb|CBI27156.3| unnamed protein product [Vitis vinifera]              261   6e-68
ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containi...   261   6e-68
ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containi...   239   3e-61
ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containi...   237   1e-60

>ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532417|gb|EEF34211.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 569

 Score =  266 bits (679), Expect = 3e-69
 Identities = 125/194 (64%), Positives = 154/194 (79%)
 Frame = -2

Query: 587 KTSLSCRAKQSSNDTVEKSNRDSLYLDKRGKLRSFNHXXXXXXXXXXXXXXGWKYGSGFV 408
           K+   C+AK SS  TVEK  RD+L+LDKRGK +SFNH              GWKYGSGFV
Sbjct: 12  KSDFRCKAKSSSGGTVEKYKRDALFLDKRGKWQSFNHKKLSRKRCGSLRGQGWKYGSGFV 71

Query: 407 DGVFPVMSPTSQKILNFLQKEVNAETVWVSLDNLPLTHATWDDIINVVVQLRLNKQWNLI 228
           DG+FPV+SP +Q+IL+F+QKEV+  TVW +LD LP TH TWDD+INVVVQLRLNK+W+LI
Sbjct: 72  DGIFPVLSPIAQQILSFIQKEVDPSTVWAALDTLPATHETWDDLINVVVQLRLNKKWDLI 131

Query: 227 VLVCEWILQRSSFKPDVMCYNLLIDAYGQMSQYKKAESAYLGLQKARCVPTEDTYALLLR 48
           +L+C+WIL RSSF+ DVM +NL+IDAYG+ S YK AE+ Y  L +ARC+PTEDTYALLL+
Sbjct: 132 LLICQWILYRSSFQSDVMIFNLVIDAYGRKSLYKMAETTYFELIEARCIPTEDTYALLLK 191

Query: 47  AYCTSGLLDKAEAV 6
           AYCTSGLL+KAEA+
Sbjct: 192 AYCTSGLLEKAEAI 205


>emb|CBI27156.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score =  261 bits (667), Expect = 6e-68
 Identities = 128/194 (65%), Positives = 148/194 (76%)
 Frame = -2

Query: 587 KTSLSCRAKQSSNDTVEKSNRDSLYLDKRGKLRSFNHXXXXXXXXXXXXXXGWKYGSGFV 408
           K  +  RA+ ++   VEK  RDSL++DKRGK RSFN               GWKYGSGFV
Sbjct: 70  KGDVQWRAENTNGGVVEKGKRDSLFIDKRGKFRSFNFKKQSRKKGGSLRGRGWKYGSGFV 129

Query: 407 DGVFPVMSPTSQKILNFLQKEVNAETVWVSLDNLPLTHATWDDIINVVVQLRLNKQWNLI 228
           DG+FPVMSP +Q+IL+F+QKE  +  +W SLD+L   H TWDDIINV VQLRLNKQW+ I
Sbjct: 130 DGIFPVMSPIAQQILDFVQKEERSNRIWGSLDSLSPNHTTWDDIINVAVQLRLNKQWDAI 189

Query: 227 VLVCEWILQRSSFKPDVMCYNLLIDAYGQMSQYKKAESAYLGLQKARCVPTEDTYALLLR 48
           VL+C WIL RSSF PDV+CYNLLIDAYGQ S YKKAES YL L +ARCVPTEDTYALLL+
Sbjct: 190 VLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLK 249

Query: 47  AYCTSGLLDKAEAV 6
           AYCTSGLL+KAEAV
Sbjct: 250 AYCTSGLLEKAEAV 263


>ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Vitis vinifera]
          Length = 587

 Score =  261 bits (667), Expect = 6e-68
 Identities = 128/194 (65%), Positives = 148/194 (76%)
 Frame = -2

Query: 587 KTSLSCRAKQSSNDTVEKSNRDSLYLDKRGKLRSFNHXXXXXXXXXXXXXXGWKYGSGFV 408
           K  +  RA+ ++   VEK  RDSL++DKRGK RSFN               GWKYGSGFV
Sbjct: 32  KGDVQWRAENTNGGVVEKGKRDSLFIDKRGKFRSFNFKKQSRKKGGSLRGRGWKYGSGFV 91

Query: 407 DGVFPVMSPTSQKILNFLQKEVNAETVWVSLDNLPLTHATWDDIINVVVQLRLNKQWNLI 228
           DG+FPVMSP +Q+IL+F+QKE  +  +W SLD+L   H TWDDIINV VQLRLNKQW+ I
Sbjct: 92  DGIFPVMSPIAQQILDFVQKEERSNRIWGSLDSLSPNHTTWDDIINVAVQLRLNKQWDAI 151

Query: 227 VLVCEWILQRSSFKPDVMCYNLLIDAYGQMSQYKKAESAYLGLQKARCVPTEDTYALLLR 48
           VL+C WIL RSSF PDV+CYNLLIDAYGQ S YKKAES YL L +ARCVPTEDTYALLL+
Sbjct: 152 VLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLK 211

Query: 47  AYCTSGLLDKAEAV 6
           AYCTSGLL+KAEAV
Sbjct: 212 AYCTSGLLEKAEAV 225


>ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Glycine max]
          Length = 576

 Score =  239 bits (610), Expect = 3e-61
 Identities = 112/188 (59%), Positives = 144/188 (76%)
 Frame = -2

Query: 569 RAKQSSNDTVEKSNRDSLYLDKRGKLRSFNHXXXXXXXXXXXXXXGWKYGSGFVDGVFPV 390
           +A  S++  +EK  RDS+Y+DK G+LR+FNH              GWKYGSGFVDG+FPV
Sbjct: 25  KANDSNSVALEKFKRDSVYIDKNGRLRNFNHKKVSRKKCGSLRGRGWKYGSGFVDGIFPV 84

Query: 389 MSPTSQKILNFLQKEVNAETVWVSLDNLPLTHATWDDIINVVVQLRLNKQWNLIVLVCEW 210
           +SPT+Q+IL++++K V +E++W SLD LP T   WDDI  V VQLR+ KQW+ I+ +C W
Sbjct: 85  LSPTAQQILDYVEKGVESESIWGSLDMLPPTLDAWDDIFTVAVQLRMRKQWDSIISICRW 144

Query: 209 ILQRSSFKPDVMCYNLLIDAYGQMSQYKKAESAYLGLQKARCVPTEDTYALLLRAYCTSG 30
           IL RSSFKPDV+CYNLLI+A+GQ   YK+AES YL L +ARC+PTEDTYALL++AYC SG
Sbjct: 145 ILLRSSFKPDVICYNLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYALLIKAYCISG 204

Query: 29  LLDKAEAV 6
           LL+KAEAV
Sbjct: 205 LLEKAEAV 212


>ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Cucumis sativus]
          Length = 576

 Score =  237 bits (604), Expect = 1e-60
 Identities = 111/195 (56%), Positives = 147/195 (75%)
 Frame = -2

Query: 590 YKTSLSCRAKQSSNDTVEKSNRDSLYLDKRGKLRSFNHXXXXXXXXXXXXXXGWKYGSGF 411
           Y+ ++ C    ++++ VEKS RD LY+DKRGK R+FN               GWKYGSGF
Sbjct: 22  YRWTVKC----ANSEVVEKSRRDGLYVDKRGKFRTFNRKRLSRKRCGSLRGRGWKYGSGF 77

Query: 410 VDGVFPVMSPTSQKILNFLQKEVNAETVWVSLDNLPLTHATWDDIINVVVQLRLNKQWNL 231
           VDG+FPV+ P +Q+I+ F+++EV+   +W SLD LP T++TWDDII+V VQLRLNK+W  
Sbjct: 78  VDGIFPVLGPLAQQIMEFVREEVDYMGLWDSLDTLPATNSTWDDIISVAVQLRLNKKWGP 137

Query: 230 IVLVCEWILQRSSFKPDVMCYNLLIDAYGQMSQYKKAESAYLGLQKARCVPTEDTYALLL 51
           I+L+CEWI+ +S+F+PDV+ YNLL+DAYGQ S YK  ES YL L ++ C+PTEDTYALLL
Sbjct: 138 IILICEWIMNKSTFRPDVIVYNLLMDAYGQRSLYKDVESTYLELLESHCIPTEDTYALLL 197

Query: 50  RAYCTSGLLDKAEAV 6
           +AYC SGLL+KAEAV
Sbjct: 198 KAYCKSGLLEKAEAV 212