BLASTX nr result
ID: Coptis21_contig00006147
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00006147
(1339 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269920.2| PREDICTED: DNA polymerase epsilon catalytic ... 331 3e-88
emb|CBI17056.3| unnamed protein product [Vitis vinifera] 331 3e-88
ref|XP_004160105.1| PREDICTED: DNA polymerase epsilon catalytic ... 319 9e-85
ref|XP_004145799.1| PREDICTED: DNA polymerase epsilon catalytic ... 318 3e-84
ref|XP_002328167.1| predicted protein [Populus trichocarpa] gi|2... 312 1e-82
>ref|XP_002269920.2| PREDICTED: DNA polymerase epsilon catalytic subunit A [Vitis
vinifera]
Length = 2214
Score = 331 bits (848), Expect = 3e-88
Identities = 159/195 (81%), Positives = 175/195 (89%), Gaps = 3/195 (1%)
Frame = -3
Query: 581 WKALGWQIVAAKIGMQRCVASSQWLKERISLSRYAHVPLGNFELDWLLFTADIFFSRALR 402
++ALGWQIVAAKIGMQRC A++QWL ERISL+RYAHVPLGNFE DWL+FTAD+FFSRALR
Sbjct: 1607 YQALGWQIVAAKIGMQRCAAATQWLNERISLARYAHVPLGNFEPDWLIFTADLFFSRALR 1666
Query: 401 DQQQVLWISDDGIPDLGGISEDDTCSTDEVHQPVLTDPGAYRKVTVELKIHHLAVNALLK 222
DQQQVLWISD+GIPDLGG++E+DTC DEVHQPVLT PGAYRKV+VELKIHHLAVNALLK
Sbjct: 1667 DQQQVLWISDNGIPDLGGLNEEDTCFADEVHQPVLTYPGAYRKVSVELKIHHLAVNALLK 1726
Query: 221 SNQVNEMEGGALFGFDQDINAGPH---EQTGFDETRSCASAFRVLKQLIQRCLQDAIKFG 51
SNQVNEMEGGALFGF+QD+N G H EQ GFDE CA FRVLKQLIQRCL DA+ G
Sbjct: 1727 SNQVNEMEGGALFGFEQDMNMGAHGFNEQCGFDEATLCAPTFRVLKQLIQRCLADAVSSG 1786
Query: 50 NVFADALLQHLYRWL 6
NVFADA+LQHLYRWL
Sbjct: 1787 NVFADAILQHLYRWL 1801
>emb|CBI17056.3| unnamed protein product [Vitis vinifera]
Length = 2723
Score = 331 bits (848), Expect = 3e-88
Identities = 159/195 (81%), Positives = 175/195 (89%), Gaps = 3/195 (1%)
Frame = -3
Query: 581 WKALGWQIVAAKIGMQRCVASSQWLKERISLSRYAHVPLGNFELDWLLFTADIFFSRALR 402
++ALGWQIVAAKIGMQRC A++QWL ERISL+RYAHVPLGNFE DWL+FTAD+FFSRALR
Sbjct: 2116 YQALGWQIVAAKIGMQRCAAATQWLNERISLARYAHVPLGNFEPDWLIFTADLFFSRALR 2175
Query: 401 DQQQVLWISDDGIPDLGGISEDDTCSTDEVHQPVLTDPGAYRKVTVELKIHHLAVNALLK 222
DQQQVLWISD+GIPDLGG++E+DTC DEVHQPVLT PGAYRKV+VELKIHHLAVNALLK
Sbjct: 2176 DQQQVLWISDNGIPDLGGLNEEDTCFADEVHQPVLTYPGAYRKVSVELKIHHLAVNALLK 2235
Query: 221 SNQVNEMEGGALFGFDQDINAGPH---EQTGFDETRSCASAFRVLKQLIQRCLQDAIKFG 51
SNQVNEMEGGALFGF+QD+N G H EQ GFDE CA FRVLKQLIQRCL DA+ G
Sbjct: 2236 SNQVNEMEGGALFGFEQDMNMGAHGFNEQCGFDEATLCAPTFRVLKQLIQRCLADAVSSG 2295
Query: 50 NVFADALLQHLYRWL 6
NVFADA+LQHLYRWL
Sbjct: 2296 NVFADAILQHLYRWL 2310
>ref|XP_004160105.1| PREDICTED: DNA polymerase epsilon catalytic subunit A-like, partial
[Cucumis sativus]
Length = 2051
Score = 319 bits (818), Expect = 9e-85
Identities = 152/196 (77%), Positives = 171/196 (87%), Gaps = 3/196 (1%)
Frame = -3
Query: 581 WKALGWQIVAAKIGMQRCVASSQWLKERISLSRYAHVPLGNFELDWLLFTADIFFSRALR 402
++ LGWQ AAKIGMQRC ASSQWL ERISL+RYAHVPLGNFELDWL+FTADIFFSRAL
Sbjct: 1602 YQVLGWQQTAAKIGMQRCAASSQWLNERISLARYAHVPLGNFELDWLIFTADIFFSRALH 1661
Query: 401 DQQQVLWISDDGIPDLGGISEDDTCSTDEVHQPVLTDPGAYRKVTVELKIHHLAVNALLK 222
DQQQVLWISDDG+PD+GGI+ +D C DEV QP+LT PGAYRKV+VELKIHHLAVNALLK
Sbjct: 1662 DQQQVLWISDDGVPDIGGINIEDVCFADEVQQPILTYPGAYRKVSVELKIHHLAVNALLK 1721
Query: 221 SNQVNEMEGGALFGFDQDINAG---PHEQTGFDETRSCASAFRVLKQLIQRCLQDAIKFG 51
SNQVNEMEGG+LFGF++DI G +E+ GFDE SCA AFRVLKQLIQRCL DA+ G
Sbjct: 1722 SNQVNEMEGGSLFGFERDIQCGAQFSNEEGGFDEAASCAPAFRVLKQLIQRCLTDAVTSG 1781
Query: 50 NVFADALLQHLYRWLC 3
NV+ADA+LQHLYRW+C
Sbjct: 1782 NVYADAILQHLYRWIC 1797
>ref|XP_004145799.1| PREDICTED: DNA polymerase epsilon catalytic subunit A-like [Cucumis
sativus]
Length = 2206
Score = 318 bits (814), Expect = 3e-84
Identities = 151/196 (77%), Positives = 170/196 (86%), Gaps = 3/196 (1%)
Frame = -3
Query: 581 WKALGWQIVAAKIGMQRCVASSQWLKERISLSRYAHVPLGNFELDWLLFTADIFFSRALR 402
++ LGWQ AAKIGMQRC ASSQWL ERISL+RYAHVPLGNFELDWL+FTADIFFSRAL
Sbjct: 1602 YQVLGWQQTAAKIGMQRCAASSQWLNERISLARYAHVPLGNFELDWLIFTADIFFSRALH 1661
Query: 401 DQQQVLWISDDGIPDLGGISEDDTCSTDEVHQPVLTDPGAYRKVTVELKIHHLAVNALLK 222
DQQQVLWISDDG+PD+GGI+ +D C DEV QP+LT PGAYRKV+VE KIHHLAVNALLK
Sbjct: 1662 DQQQVLWISDDGVPDIGGINIEDVCFADEVQQPILTYPGAYRKVSVEFKIHHLAVNALLK 1721
Query: 221 SNQVNEMEGGALFGFDQDINAG---PHEQTGFDETRSCASAFRVLKQLIQRCLQDAIKFG 51
SNQVNEMEGG+LFGF++DI G +E+ GFDE SCA AFRVLKQLIQRCL DA+ G
Sbjct: 1722 SNQVNEMEGGSLFGFERDIQCGAQFSNEEGGFDEAASCAPAFRVLKQLIQRCLTDAVTSG 1781
Query: 50 NVFADALLQHLYRWLC 3
NV+ADA+LQHLYRW+C
Sbjct: 1782 NVYADAILQHLYRWIC 1797
>ref|XP_002328167.1| predicted protein [Populus trichocarpa] gi|222837682|gb|EEE76047.1|
predicted protein [Populus trichocarpa]
Length = 2221
Score = 312 bits (800), Expect = 1e-82
Identities = 151/195 (77%), Positives = 168/195 (86%), Gaps = 2/195 (1%)
Frame = -3
Query: 581 WKALGWQIVAAKIGMQRCVASSQWLKERISLSRYAHVPLGNFELDWLLFTADIFFSRALR 402
++ LGWQ +AKIGMQR ASSQWL ERISLSRYAHVPLGNFELDWL+FTAD+FFSRAL
Sbjct: 1604 YQVLGWQQASAKIGMQRSAASSQWLNERISLSRYAHVPLGNFELDWLIFTADVFFSRALH 1663
Query: 401 DQQQVLWISDDGIPDLGGISEDDTCSTDEVHQPVLTDPGAYRKVTVELKIHHLAVNALLK 222
DQQQVLWISDDG+PDLGG E+ TC DEV QPVLT PGAYRKV+VELKIHHLAV+ALLK
Sbjct: 1664 DQQQVLWISDDGVPDLGGNHEESTCFADEVQQPVLTYPGAYRKVSVELKIHHLAVDALLK 1723
Query: 221 SNQVNEMEGGALFGFDQDINAGP--HEQTGFDETRSCASAFRVLKQLIQRCLQDAIKFGN 48
SNQ+NEMEGGAL GFDQD+N+ ++Q+GFDE S AS RVLKQLIQRCL DA+ GN
Sbjct: 1724 SNQINEMEGGALLGFDQDMNSSTTLYDQSGFDEATSSASGLRVLKQLIQRCLADAVTSGN 1783
Query: 47 VFADALLQHLYRWLC 3
VFADA+LQHLYRWLC
Sbjct: 1784 VFADAILQHLYRWLC 1798