BLASTX nr result
ID: Coptis21_contig00005878
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00005878
(2621 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ... 479 e-132
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera] 478 e-132
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [... 441 e-121
ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|2... 431 e-118
emb|CAD20832.1| sigma factor [Spinacia oleracea] 392 e-106
>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product
[Vitis vinifera]
Length = 561
Score = 479 bits (1233), Expect = e-132
Identities = 266/522 (50%), Positives = 346/522 (66%), Gaps = 8/522 (1%)
Frame = +1
Query: 151 MVIRFMLDLNCGFQTKSPFHLNS--RKHSTSVTTREASYESARAFILSVTPEDSETQCKV 324
M + F L+L F P NS R ++SV +EAS++S R SVT ED E+ K
Sbjct: 1 MGMGFRLNLKWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKD 60
Query: 325 PLKSYTSSFGTLQVME---SGSKEMKMSLGKGLHTTWYDQIDDIRMPMQEYTSISSRGLR 495
P K + S G LQ E S + MKM +GK H + ++ + P+ E S S GL+
Sbjct: 61 PFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQ 120
Query: 496 EKEKSSFYLLCKNIEEIERIFVDEDLVVLEREIYIQLEKLGALKLFHACLARALAIPTTL 675
+ S F LL +N++ +E +F D ++V LER+I +QL +LGALKLF CL+R L T+
Sbjct: 121 ASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSF 180
Query: 676 NSHTELTKH---SSTEGDVHDHVNITIVRSGKKEDRKSRREKISKTVSKTSFLAPMSKSI 846
+ + T+H T G V DH++ +VRSGKKE+RKS+RE+ + SK+I
Sbjct: 181 DLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTI 240
Query: 847 SKLPRRAIGSTVGSTYKSRSRRQKVVRNEAEMSRRVKDVAELEKIRTKLEIESGQVASFH 1026
K P R STV T SR +R +NEAEMS+ VK VA LE+IR LE E G VAS
Sbjct: 241 RKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLS 300
Query: 1027 SWAEAAGVDAKVLQQRLHYGWFCRDKLLRSTHSLVVYLARNYRGLRVSLEDLYQAGNMGV 1206
+WAEAAGVD KVLQQ+L +GW+CRD+LLRSTHSLV+Y+ARNYRG+ V+ ED+ QAGN+GV
Sbjct: 301 NWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGV 360
Query: 1207 LKGAERFDHTRGYQFSTYVQYWIRKYMSGLVTQHSREIQIPVTLSRRINQIKKARKTLYT 1386
L+GAERFDHT+GY+FSTYVQYWIRK MS LV +H+R ++IP TL+R I QI+KARK LY
Sbjct: 361 LQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYK 420
Query: 1387 LHGRYPDDDEISKFSGLSIAKIRFASQCPRIVGSVDQKVGDDLSAKFTEFTVDTSIKCPE 1566
HGRYPDD+EI+KF+GLS+AKIR A C R+VGS DQ D A EFT DTSIK PE
Sbjct: 421 SHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPE 480
Query: 1567 EVVTRQHMQKDLYELLQWLHPRESRVLVLRFGLWDGQCKSLQ 1692
E +Q +KD++ LL+ L PRE ++LVLR+G + Q KSL+
Sbjct: 481 EGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLE 522
>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 478 bits (1230), Expect = e-132
Identities = 260/517 (50%), Positives = 343/517 (66%), Gaps = 6/517 (1%)
Frame = +1
Query: 160 RFMLDLNCGFQTKSPFHLNSRKHSTSVTTREASYESARAFILSVTPEDSETQCKVPLKSY 339
RF+L G+ H+++ + + +EAS++S R SVT ED E+ K P K +
Sbjct: 56 RFVLYKYLGYSHNGLDHIDNHETDPYIQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPF 115
Query: 340 TSSFGTLQVME---SGSKEMKMSLGKGLHTTWYDQIDDIRMPMQEYTSISSRGLREKEKS 510
S G LQ E S + MKM +GK H + ++ + P+ E S S GL+ + S
Sbjct: 116 ACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQASKAS 175
Query: 511 SFYLLCKNIEEIERIFVDEDLVVLEREIYIQLEKLGALKLFHACLARALAIPTTLNSHTE 690
F LL +N++ +E +F D ++V LER+I +QL +LGALKLF CL+R L T+ + +
Sbjct: 176 QFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSA 235
Query: 691 LTKH---SSTEGDVHDHVNITIVRSGKKEDRKSRREKISKTVSKTSFLAPMSKSISKLPR 861
T+H T G V DH++ +VRSGKKE+RKS+RE+ + SK+I K P
Sbjct: 236 PTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTIRKGPG 295
Query: 862 RAIGSTVGSTYKSRSRRQKVVRNEAEMSRRVKDVAELEKIRTKLEIESGQVASFHSWAEA 1041
R STV T SR +R +NEAEMS+ VK VA LE+IR LE E G VAS +WAEA
Sbjct: 296 RPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEA 355
Query: 1042 AGVDAKVLQQRLHYGWFCRDKLLRSTHSLVVYLARNYRGLRVSLEDLYQAGNMGVLKGAE 1221
AGVD KVLQQ+L +GW+CRD+LLRSTHSLV+Y+ARNYRG+ V+ ED+ QAGN+GVL+GAE
Sbjct: 356 AGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAE 415
Query: 1222 RFDHTRGYQFSTYVQYWIRKYMSGLVTQHSREIQIPVTLSRRINQIKKARKTLYTLHGRY 1401
RFDHT+GY+FSTYVQYWIRK MS LV +H+R ++IP TL+R I QI+KARK LY HGRY
Sbjct: 416 RFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRY 475
Query: 1402 PDDDEISKFSGLSIAKIRFASQCPRIVGSVDQKVGDDLSAKFTEFTVDTSIKCPEEVVTR 1581
PDD+EI+KF+GLS+AKIR A C R+VGS DQ D A EFT DTSIK PEE +
Sbjct: 476 PDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQ 535
Query: 1582 QHMQKDLYELLQWLHPRESRVLVLRFGLWDGQCKSLQ 1692
Q +KD++ LL+ L PRE ++LVLR+G + Q KSL+
Sbjct: 536 QCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLE 572
>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 560
Score = 441 bits (1133), Expect = e-121
Identities = 252/519 (48%), Positives = 342/519 (65%), Gaps = 9/519 (1%)
Frame = +1
Query: 163 FMLDLNCGF---QTKSPFHLNSRKHSTSVTTREASYESARAFILSVTPEDSETQCKVPLK 333
F L+L F SP L+S S+ V REA+ +R LSV E+ + + PLK
Sbjct: 5 FRLNLKLDFPFHSPNSPSRLSSSPSSSFVRGREATSYQSRLSFLSVISEEGDIAHRDPLK 64
Query: 334 SYTSSFG--TLQVMESGSKEMKMSLGKGLHTTWYDQIDDIRMPMQEYTSISSRGLREKEK 507
+Y S+ T++ S + K++ GK H + I D + ++E +S +E+
Sbjct: 65 TYAYSYAVQTVENEHSQGEGFKVNFGKRSHFG-LNIIGDAEVSLKEDIFVSPSSTKERT- 122
Query: 508 SSFYLLCKNIEEIERIFVDEDLVVLEREIYIQLEKLGALKLFHACLARALAIPTTL---N 678
S F LL +N+ +E+ F D D LE +I +QL KLGALKLF+ CL R L L +
Sbjct: 123 SRFSLLLENLNILEQSFADSDASKLEEDILLQLGKLGALKLFNTCLTRTLETTNVLEVSD 182
Query: 679 SHTELTKHSSTEGDVHDHVNITIVRSGKKEDRKSRREKISKTVSKTSFLAPM-SKSISKL 855
HTE+ + G ++ +V + KKE+RKSRRE+ S S P+ S+ I
Sbjct: 183 VHTEIIGECNINGTSINNQIKVVVHTAKKEERKSRRERASARKGHKSPSLPLPSRPIQSG 242
Query: 856 PRRAIGSTVGSTYKSRSRRQKVVRNEAEMSRRVKDVAELEKIRTKLEIESGQVASFHSWA 1035
+ S+ KS+SRR + RNEAEM+R +K +A+LEKIRT LE E+ +V S WA
Sbjct: 243 SEKPTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLSCWA 302
Query: 1036 EAAGVDAKVLQQRLHYGWFCRDKLLRSTHSLVVYLARNYRGLRVSLEDLYQAGNMGVLKG 1215
EAAG+D KVLQQ+L +GW+CRD+L++ST SLV+Y ARNYRG ++LEDL QAGN+GVL+G
Sbjct: 303 EAAGLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLGVLEG 362
Query: 1216 AERFDHTRGYQFSTYVQYWIRKYMSGLVTQHSREIQIPVTLSRRINQIKKARKTLYTLHG 1395
AERFDHTRGY+FSTYVQYWIRK MS +V++ +R IQIP TLSR I QI+KARK L T +G
Sbjct: 363 AERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQKARKALTTSNG 422
Query: 1396 RYPDDDEISKFSGLSIAKIRFASQCPRIVGSVDQKVGDDLSAKFTEFTVDTSIKCPEEVV 1575
+YPDDDEI+K++GLS+AKI AS+C R+VGS+DQK+G+ L+AK+ EF DTS++ PEEVV
Sbjct: 423 KYPDDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIGESLNAKYLEFLPDTSVQSPEEVV 482
Query: 1576 TRQHMQKDLYELLQWLHPRESRVLVLRFGLWDGQCKSLQ 1692
RQHM +D++ LL+ L RE +VL+LRFGL D Q KSL+
Sbjct: 483 MRQHMIQDMHNLLRSLDSRERQVLILRFGLNDYQPKSLE 521
>ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|222854562|gb|EEE92109.1|
predicted protein [Populus trichocarpa]
Length = 559
Score = 431 bits (1108), Expect = e-118
Identities = 241/510 (47%), Positives = 337/510 (66%), Gaps = 13/510 (2%)
Frame = +1
Query: 199 SPFHLNSRKHSTSVTTR------EASYESARAFILSVTPEDSETQCKVPLKSYTSSFGTL 360
SP +S +STS+ + EAS AR LSV E+ + K KS+ S
Sbjct: 13 SPMQSHSATNSTSMFSSFSARGMEASVNQARLSFLSVVSEEGDILNKHSFKSFACSSAAQ 72
Query: 361 QVMES--GSKEMKMSLGKGLHTTWYDQIDDIRMPMQEYTSISSRGLREKEKSSFYLLCKN 534
V + +KM++ K H + + + + ++ ++E S S LRE+ S L N
Sbjct: 73 NVENDCLQMERLKMNVDKTSHVSINNMMGNDKVSVEEEISTSHTRLRERMTSRISFLLDN 132
Query: 535 IEEIERIFVDEDLVVLEREIYIQLEKLGALKLFHACLARALAIPTTLNSH---TELTKHS 705
++ +E++ D D + LER+I +QL +LGAL+ F+ACL+R L L+ TE T S
Sbjct: 133 LDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNVLDLSAVPTENTGES 192
Query: 706 STEGDVHDHVNITIVRSGKKEDRKSRREKI-SKTVSKTSFLAPMSKSI-SKLPRRAIGST 879
T+G + D T+VR+GKKE+RK RRE+ S KT+ L+ SK++ + LP+
Sbjct: 193 KTDGMLGDLTGKTVVRTGKKEERKFRRERAASDNGKKTTSLSLPSKTVQNNLPKPTF--- 249
Query: 880 VGSTYKSRSRRQKVVRNEAEMSRRVKDVAELEKIRTKLEIESGQVASFHSWAEAAGVDAK 1059
V T S SRR + RNEA+M+R VK ++LE+IRT LE E+GQV S WAEA G+D K
Sbjct: 250 VKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSCWAEATGLDKK 309
Query: 1060 VLQQRLHYGWFCRDKLLRSTHSLVVYLARNYRGLRVSLEDLYQAGNMGVLKGAERFDHTR 1239
VLQQ+L +GW+CRD+L+++THSLV+Y+ARNYRG+ +++EDL QAGN+G+L+GAERFD TR
Sbjct: 310 VLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLLQGAERFDPTR 369
Query: 1240 GYQFSTYVQYWIRKYMSGLVTQHSREIQIPVTLSRRINQIKKARKTLYTLHGRYPDDDEI 1419
GY+FSTYVQYWIRK M +V +H+R IQIP LSR IN+I+KARK L HGRYPDD E+
Sbjct: 370 GYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALSNSHGRYPDDWEV 429
Query: 1420 SKFSGLSIAKIRFASQCPRIVGSVDQKVGDDLSAKFTEFTVDTSIKCPEEVVTRQHMQKD 1599
+KF+GLS+AKI A +C R+V S+DQK+G+ AK++EF D SI+ PEE V RQHM+++
Sbjct: 430 AKFTGLSLAKIESAQKCLRVVASLDQKIGEGHYAKYSEFIPDMSIQNPEEAVMRQHMREE 489
Query: 1600 LYELLQWLHPRESRVLVLRFGLWDGQCKSL 1689
+Y+LL+ L RE +V+VLR+G D Q KSL
Sbjct: 490 IYDLLRGLDSREKQVMVLRYGFKDNQPKSL 519
>emb|CAD20832.1| sigma factor [Spinacia oleracea]
Length = 548
Score = 392 bits (1008), Expect = e-106
Identities = 221/499 (44%), Positives = 317/499 (63%), Gaps = 1/499 (0%)
Frame = +1
Query: 196 KSPFHLNSRKH-STSVTTREASYESARAFILSVTPEDSETQCKVPLKSYTSSFGTLQVME 372
+SPF NS STS +E + SAR +L++ ++SET K L+ + S +E
Sbjct: 18 RSPFTTNSSPPCSTSFRGKELDFGSARLSLLTIGFDESETLRKDTLRPHAGSSSVPLTVE 77
Query: 373 SGSKEMKMSLGKGLHTTWYDQIDDIRMPMQEYTSISSRGLREKEKSSFYLLCKNIEEIER 552
+ ++ ++ K + D I D + S+ R ++ S F+ L NI +E
Sbjct: 78 NDYSNLETTISK---RSCKDLISDTEVLSDRDVSVYVRSVQSCSASHFHTLMANINLLEN 134
Query: 553 IFVDEDLVVLEREIYIQLEKLGALKLFHACLARALAIPTTLNSHTELTKHSSTEGDVHDH 732
D +L+ LE++I +QL +LGAL+LFHACL+R + + TE K + + +
Sbjct: 135 KVSDSELLKLEKDILVQLGRLGALQLFHACLSRIIDMSDLPGLITEDGKANVRKDN---E 191
Query: 733 VNITIVRSGKKEDRKSRREKISKTVSKTSFLAPMSKSISKLPRRAIGSTVGSTYKSRSRR 912
+ +V S +KE+RK R+E+ + + SI + ST K+R RR
Sbjct: 192 LKKKLVFSKRKEERKLRQERRLQASTSKRCACKSESSIESSIHHVV-STAAKKTKARGRR 250
Query: 913 QKVVRNEAEMSRRVKDVAELEKIRTKLEIESGQVASFHSWAEAAGVDAKVLQQRLHYGWF 1092
+ +NEAEMSR +K VA+LEK++ LE E+G+ S + WAEAAG+D KVLQ LH+GW+
Sbjct: 251 AIIAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGWY 310
Query: 1093 CRDKLLRSTHSLVVYLARNYRGLRVSLEDLYQAGNMGVLKGAERFDHTRGYQFSTYVQYW 1272
CRD+LL+S SLV+YL+R YRGL V+ EDL QAGN+G+L+GAERFDHTRGYQFSTYVQYW
Sbjct: 311 CRDELLKSGRSLVLYLSRYYRGLGVAHEDLMQAGNIGILQGAERFDHTRGYQFSTYVQYW 370
Query: 1273 IRKYMSGLVTQHSREIQIPVTLSRRINQIKKARKTLYTLHGRYPDDDEISKFSGLSIAKI 1452
IRK MS LV++H R I++P TLS IN+++KARK L G++PDD E+SK +GLS+ KI
Sbjct: 371 IRKAMSQLVSRHGRGIKVPTTLSTTINRVQKARKILKRSQGKHPDDVEVSKSTGLSLDKI 430
Query: 1453 RFASQCPRIVGSVDQKVGDDLSAKFTEFTVDTSIKCPEEVVTRQHMQKDLYELLQWLHPR 1632
+ A C RIVGS+DQKVG ++ K+ E T DT+++ PE+ V +QHM+ D+++LLQ L P+
Sbjct: 431 KSADNCLRIVGSLDQKVGHFINMKYLECTPDTALEMPEKTVMKQHMRNDVHKLLQELDPK 490
Query: 1633 ESRVLVLRFGLWDGQCKSL 1689
E RVL+ R+GL +G C SL
Sbjct: 491 ERRVLIHRYGL-EGHCMSL 508