BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00005835
         (1326 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272790.2| PREDICTED: nuclear pore membrane glycoprotei...   132   3e-28
emb|CBI34862.3| unnamed protein product [Vitis vinifera]              132   3e-28
ref|XP_002521470.1| RNA binding protein, putative [Ricinus commu...   131   3e-28
ref|XP_004173895.1| PREDICTED: nuclear polyadenylated RNA-bindin...   128   3e-27
ref|XP_004141110.1| PREDICTED: LOW QUALITY PROTEIN: nuclear pore...   128   3e-27

>ref|XP_002272790.2| PREDICTED: nuclear pore membrane glycoprotein 210-like [Vitis
            vinifera]
          Length = 2363

 Score =  132 bits (331), Expect = 3e-28
 Identities = 62/98 (63%), Positives = 77/98 (78%)
 Frame = +3

Query: 3    TKKIFVGGIPTTVTEDELKEFFAKFGEVKEHMIMRDHATTRSRGFGFITFETEQSVDGLL 182
            TKKIFVGGIP TVTE+E K+FF ++GEVK+H IMRDH+T+RSRGFGF+TF+TEQ+VD LL
Sbjct: 2115 TKKIFVGGIPATVTEEEFKDFFTQYGEVKDHQIMRDHSTSRSRGFGFVTFDTEQAVDDLL 2174

Query: 183  SKGNKIEMAGAQVEIXXXXXXXXXXXXXXXXRFNDSRP 296
            S+GNK+E+AGAQVEI                R++DSRP
Sbjct: 2175 SQGNKLELAGAQVEIKKAEPKKPNPPVPPSRRYSDSRP 2212


>emb|CBI34862.3| unnamed protein product [Vitis vinifera]
          Length = 281

 Score =  132 bits (331), Expect = 3e-28
 Identities = 62/98 (63%), Positives = 77/98 (78%)
 Frame = +3

Query: 3   TKKIFVGGIPTTVTEDELKEFFAKFGEVKEHMIMRDHATTRSRGFGFITFETEQSVDGLL 182
           TKKIFVGGIP TVTE+E K+FF ++GEVK+H IMRDH+T+RSRGFGF+TF+TEQ+VD LL
Sbjct: 128 TKKIFVGGIPATVTEEEFKDFFTQYGEVKDHQIMRDHSTSRSRGFGFVTFDTEQAVDDLL 187

Query: 183 SKGNKIEMAGAQVEIXXXXXXXXXXXXXXXXRFNDSRP 296
           S+GNK+E+AGAQVEI                R++DSRP
Sbjct: 188 SQGNKLELAGAQVEIKKAEPKKPNPPVPPSRRYSDSRP 225


>ref|XP_002521470.1| RNA binding protein, putative [Ricinus communis]
            gi|223539369|gb|EEF40960.1| RNA binding protein, putative
            [Ricinus communis]
          Length = 2256

 Score =  131 bits (330), Expect = 3e-28
 Identities = 65/98 (66%), Positives = 74/98 (75%)
 Frame = +3

Query: 3    TKKIFVGGIPTTVTEDELKEFFAKFGEVKEHMIMRDHATTRSRGFGFITFETEQSVDGLL 182
            TKKIFVGGIPTTVTE E KEFF ++GEV EH IMRDH+T RSRGFGFITF+TEQ+VD LL
Sbjct: 2014 TKKIFVGGIPTTVTEVEFKEFFMQYGEVIEHQIMRDHSTNRSRGFGFITFDTEQAVDDLL 2073

Query: 183  SKGNKIEMAGAQVEIXXXXXXXXXXXXXXXXRFNDSRP 296
            +KGNK+E+AG QVEI                R+NDSRP
Sbjct: 2074 AKGNKLELAGGQVEIKKAEPKKPNPPLPSSKRYNDSRP 2111



 Score = 58.2 bits (139), Expect = 5e-06
 Identities = 28/74 (37%), Positives = 44/74 (59%)
 Frame = +3

Query: 6    KKIFVGGIPTTVTEDELKEFFAKFGEVKEHMIMRDHATTRSRGFGFITFETEQSVDGLLS 185
            +KIF+GG+    T  +  + F K+GE+ + +IM+D  T + RGFGF+T+     VD ++ 
Sbjct: 1927 RKIFIGGLARETTTAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDQVIQ 1986

Query: 186  KGNKIEMAGAQVEI 227
              + I   G QVEI
Sbjct: 1987 DSHVIN--GKQVEI 1998


>ref|XP_004173895.1| PREDICTED: nuclear polyadenylated RNA-binding protein 4-like,
           partial [Cucumis sativus]
          Length = 270

 Score =  128 bits (322), Expect = 3e-27
 Identities = 62/98 (63%), Positives = 75/98 (76%)
 Frame = +3

Query: 3   TKKIFVGGIPTTVTEDELKEFFAKFGEVKEHMIMRDHATTRSRGFGFITFETEQSVDGLL 182
           TKKIFVGGIPT+V EDE ++FF ++G VKEH IMRDH+T+RSRGFGFITFETEQ+VD LL
Sbjct: 93  TKKIFVGGIPTSVDEDEFRDFFMQYGVVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLL 152

Query: 183 SKGNKIEMAGAQVEIXXXXXXXXXXXXXXXXRFNDSRP 296
           + GN++EMAG+QVEI                RF+DSRP
Sbjct: 153 ANGNRLEMAGSQVEIKKAEPKKANPPPAPSKRFHDSRP 190



 Score = 58.2 bits (139), Expect = 5e-06
 Identities = 29/74 (39%), Positives = 43/74 (58%)
 Frame = +3

Query: 6   KKIFVGGIPTTVTEDELKEFFAKFGEVKEHMIMRDHATTRSRGFGFITFETEQSVDGLLS 185
           +KIFVGG+P   T  +  + F  +GE+ + +IM+D  T   RGFGF+T+     VD ++ 
Sbjct: 6   RKIFVGGLPRETTSAQFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIE 65

Query: 186 KGNKIEMAGAQVEI 227
             + I   G QVEI
Sbjct: 66  DTHIIN--GKQVEI 77


>ref|XP_004141110.1| PREDICTED: LOW QUALITY PROTEIN: nuclear pore membrane glycoprotein
            210-like [Cucumis sativus]
          Length = 2257

 Score =  128 bits (322), Expect = 3e-27
 Identities = 62/98 (63%), Positives = 75/98 (76%)
 Frame = +3

Query: 3    TKKIFVGGIPTTVTEDELKEFFAKFGEVKEHMIMRDHATTRSRGFGFITFETEQSVDGLL 182
            TKKIFVGGIPT+V EDE ++FF ++G VKEH IMRDH+T+RSRGFGFITFETEQ+VD LL
Sbjct: 2008 TKKIFVGGIPTSVDEDEFRDFFMQYGVVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLL 2067

Query: 183  SKGNKIEMAGAQVEIXXXXXXXXXXXXXXXXRFNDSRP 296
            + GN++EMAG+QVEI                RF+DSRP
Sbjct: 2068 ANGNRLEMAGSQVEIKKAEPKKANPPPAPSKRFHDSRP 2105



 Score = 57.4 bits (137), Expect = 8e-06
 Identities = 29/73 (39%), Positives = 42/73 (57%)
 Frame = +3

Query: 9    KIFVGGIPTTVTEDELKEFFAKFGEVKEHMIMRDHATTRSRGFGFITFETEQSVDGLLSK 188
            KIFVGG+P   T  +  + F  +GE+ + +IM+D  T   RGFGF+T+     VD ++  
Sbjct: 1922 KIFVGGLPRETTSAQFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIED 1981

Query: 189  GNKIEMAGAQVEI 227
             + I   G QVEI
Sbjct: 1982 THIIN--GKQVEI 1992