BLASTX nr result

ID: Coptis21_contig00005710 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00005710
         (2406 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309938.1| amino acid transporter [Populus trichocarpa]...    52   3e-11
emb|CBI21593.3| unnamed protein product [Vitis vinifera]               52   9e-10
ref|XP_002274762.1| PREDICTED: uncharacterized amino-acid permea...    52   9e-10
ref|XP_003602662.1| Amino-acid permease, putative [Medicago trun...    51   2e-09
emb|CAN60789.1| hypothetical protein VITISV_000645 [Vitis vinifera]    50   3e-09

>ref|XP_002309938.1| amino acid transporter [Populus trichocarpa]
           gi|222852841|gb|EEE90388.1| amino acid transporter
           [Populus trichocarpa]
          Length = 538

 Score = 52.4 bits (124), Expect(2) = 3e-11
 Identities = 26/51 (50%), Positives = 34/51 (66%)
 Frame = +2

Query: 485 FIAITSIAIV*WFGGNALQIFATMVMDEKVFKSESFNLRRAT*PIYLVVFM 637
           F AITSI  + W GG A+ IFA +VMDEK FK+  F L RA  P+ ++ F+
Sbjct: 426 FTAITSICTIGWVGGYAVPIFARIVMDEKNFKAGPFYLGRARRPVCIIAFL 476



 Score = 44.3 bits (103), Expect(2) = 3e-11
 Identities = 21/36 (58%), Positives = 24/36 (66%)
 Frame = +3

Query: 633 LWWSYTCSVFLFPNYLPSQMGYTSNYSHVALGIGLS 740
           LW  YTCSVFL P Y P     T NY+ VA+G+GLS
Sbjct: 476 LWICYTCSVFLLPTYYPLSWN-TFNYAPVAIGVGLS 510


>emb|CBI21593.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score = 52.4 bits (124), Expect(2) = 9e-10
 Identities = 29/58 (50%), Positives = 34/58 (58%)
 Frame = +2

Query: 485 FIAITSIAIV*WFGGNALQIFATMVMDEKVFKSESFNLRRAT*PIYLVVFMVELYMFC 658
           F AITSI  + W GG A+ IFA MVM EK FK   F L +A  P+ LV F+   Y  C
Sbjct: 410 FTAITSICTIGWVGGYAVPIFARMVMAEKNFKPGPFYLGKARRPVCLVAFLWICYTCC 467



 Score = 39.3 bits (90), Expect(2) = 9e-10
 Identities = 19/35 (54%), Positives = 22/35 (62%)
 Frame = +3

Query: 633 LWWSYTCSVFLFPNYLPSQMGYTSNYSHVALGIGL 737
           LW  YTC VFL P + P     T NY+ VALG+GL
Sbjct: 460 LWICYTCCVFLLPTFYPITWD-TFNYAPVALGVGL 493


>ref|XP_002274762.1| PREDICTED: uncharacterized amino-acid permease C15C4.04c-like
           [Vitis vinifera]
          Length = 512

 Score = 52.4 bits (124), Expect(2) = 9e-10
 Identities = 29/58 (50%), Positives = 34/58 (58%)
 Frame = +2

Query: 485 FIAITSIAIV*WFGGNALQIFATMVMDEKVFKSESFNLRRAT*PIYLVVFMVELYMFC 658
           F AITSI  + W GG A+ IFA MVM EK FK   F L +A  P+ LV F+   Y  C
Sbjct: 400 FTAITSICTIGWVGGYAVPIFARMVMAEKNFKPGPFYLGKARRPVCLVAFLWICYTCC 457



 Score = 39.3 bits (90), Expect(2) = 9e-10
 Identities = 19/35 (54%), Positives = 22/35 (62%)
 Frame = +3

Query: 633 LWWSYTCSVFLFPNYLPSQMGYTSNYSHVALGIGL 737
           LW  YTC VFL P + P     T NY+ VALG+GL
Sbjct: 450 LWICYTCCVFLLPTFYPITWD-TFNYAPVALGVGL 483


>ref|XP_003602662.1| Amino-acid permease, putative [Medicago truncatula]
           gi|358348396|ref|XP_003638233.1| Amino-acid permease,
           putative [Medicago truncatula]
           gi|355491710|gb|AES72913.1| Amino-acid permease,
           putative [Medicago truncatula]
           gi|355504168|gb|AES85371.1| Amino-acid permease,
           putative [Medicago truncatula]
          Length = 528

 Score = 50.8 bits (120), Expect(2) = 2e-09
 Identities = 27/51 (52%), Positives = 33/51 (64%)
 Frame = +2

Query: 485 FIAITSIAIV*WFGGNALQIFATMVMDEKVFKSESFNLRRAT*PIYLVVFM 637
           F AITSIA + W GG A+ IFA MVM EK FK   F L +A+ P  L+ F+
Sbjct: 416 FTAITSIATIGWVGGYAVPIFARMVMPEKNFKPGPFYLGKASRPTCLIAFL 466



 Score = 39.7 bits (91), Expect(2) = 2e-09
 Identities = 20/35 (57%), Positives = 22/35 (62%)
 Frame = +3

Query: 633 LWWSYTCSVFLFPNYLPSQMGYTSNYSHVALGIGL 737
           LW  YTCSVFL P   P     T NY+ VALG+GL
Sbjct: 466 LWICYTCSVFLLPTLYPITWD-TFNYAPVALGVGL 499


>emb|CAN60789.1| hypothetical protein VITISV_000645 [Vitis vinifera]
          Length = 512

 Score = 50.4 bits (119), Expect(2) = 3e-09
 Identities = 28/58 (48%), Positives = 33/58 (56%)
 Frame = +2

Query: 485 FIAITSIAIV*WFGGNALQIFATMVMDEKVFKSESFNLRRAT*PIYLVVFMVELYMFC 658
           F AITSI  + W GG A+ IFA MVM EK FK   F L +A  P+ L  F+   Y  C
Sbjct: 400 FTAITSICTIGWVGGYAVPIFARMVMAEKNFKPGPFYLGKARRPVCLXAFLWICYTCC 457



 Score = 39.3 bits (90), Expect(2) = 3e-09
 Identities = 19/35 (54%), Positives = 22/35 (62%)
 Frame = +3

Query: 633 LWWSYTCSVFLFPNYLPSQMGYTSNYSHVALGIGL 737
           LW  YTC VFL P + P     T NY+ VALG+GL
Sbjct: 450 LWICYTCCVFLLPTFYPITWD-TFNYAPVALGVGL 483


Top