BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00005666
         (1120 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003610255.1| F-box/LRR-repeat protein [Medicago truncatul...    79   2e-12
dbj|BAB01185.1| unnamed protein product [Arabidopsis thaliana]         74   7e-11
ref|NP_191051.2| leucine rich repeat and F-Box domain-containing...    73   1e-10
emb|CAB41093.1| putative protein [Arabidopsis thaliana]                72   3e-10
ref|XP_002877808.1| F-box family protein [Arabidopsis lyrata sub...    71   6e-10

>ref|XP_003610255.1| F-box/LRR-repeat protein [Medicago truncatula]
            gi|355511310|gb|AES92452.1| F-box/LRR-repeat protein
            [Medicago truncatula]
          Length = 392

 Score = 79.0 bits (193), Expect = 2e-12
 Identities = 86/328 (26%), Positives = 140/328 (42%), Gaps = 5/328 (1%)
 Frame = -3

Query: 1049 QINAWVLFALKHNVRELKLF--FIPE--VLPLCIFTCHTLTVLRLK-WVNLHFPSMVSFP 885
            ++N  + +ALKH V +LKL   FI     LP    + H+L  L L+  V++  P  + FP
Sbjct: 80   KVNILLSYALKHKVLDLKLSLNFIDSRFKLPHNFSSSHSLNKLYLESGVHMFIPDGICFP 139

Query: 884  SLKTLELSYVGLYGENLTKNLFLSFPVLECLILFYCKWFNFNTITSSPPDLKVLELREVX 705
            +LKTL LS +    E   + L    P+LE L L+ C W N N I  S             
Sbjct: 140  NLKTLYLSRLSFNNEMSAQRLLSGCPILEELTLYKCIWVNINQICVS------------- 186

Query: 704  XXXXXXXXXXSPTLKEMKYIASKPPNVSSETLSSLVRVGFLLNEKPSVSGNIVTKMLMGL 525
                        +   +KYI  KP ++    + + + + F   E P    +   ++L  L
Sbjct: 187  ------ISKFCTSNPAIKYILVKPTSI----VDAYIDLKFSYPENPLHVSHCAMELLSEL 236

Query: 524  RNVVKLSLCTTCFEVLGEDPNLAACLPTSCRSLRHLGLIMRPFKDSVKVLILLLRSYPRL 345
             +V  L L     E      N    LP S  +L  L +I+  F  S ++L+ +LR  P+L
Sbjct: 237  VSVKSLKLTNNTIERFSYPRNCGHLLP-SFNNLTKLDMILGYFYVSCELLVDILRKTPKL 295

Query: 344  ETLDIIFQMDSKLESILVSSEQSGELFNAYILKHLTGNLLKHLKAVKIKNFRVADEDEYH 165
            E L I     + L++  ++S+             L   +   LK     +F   DE E  
Sbjct: 296  EVLHISKGDCTALDNEDLTSDS------------LPCCIKSSLKLCSFSDFD-GDEIEIQ 342

Query: 164  IVRYILENADFLKKMSILYHPSVEEDVK 81
            +++ + ENA  L+ ++I     +  ++K
Sbjct: 343  LLKCLTENATVLEAINIFCSGGLSSNLK 370


>dbj|BAB01185.1| unnamed protein product [Arabidopsis thaliana]
          Length = 402

 Score = 73.9 bits (180), Expect = 7e-11
 Identities = 86/367 (23%), Positives = 151/367 (41%), Gaps = 10/367 (2%)
 Frame = -3

Query: 1082 VGGRDAALNGIQINAWVLFALKHNVRELKLFFIPE----VLPLCIFTCHTLTVLRLK-WV 918
            +G R      +++  W+  A   +VR+L L         + P  ++ C TL  L L+ WV
Sbjct: 62   LGFRFGECRSVEVGMWIGIAYARHVRDLVLHVESVKGSFIFPTGLYNCETLESLTLRSWV 121

Query: 917  NLHFPSMVSFPSLKTLELSYVGLYGENLTKNLFLSFPVLECLILFYCKWFNFNTITSSPP 738
             +  PS     SL+TL L  V    ++   NL    P LE L+++        T T + P
Sbjct: 122  LVDVPSPACLKSLRTLRLENVDYKYDDSVYNLLSGCPNLENLVVYRGNLLEVETFTIAVP 181

Query: 737  DLKVLELREVXXXXXXXXXXXS-PTLKEMKYIASKP-PNVSSETLSSLVRVGFLLNEKPS 564
             L+ L + +            + P+LK +K    K   +   E    LV    +     +
Sbjct: 182  SLQRLTIYDDNDGEYCTGYVINAPSLKYLKIDGFKALESCLIENAPELVEATIM-----N 236

Query: 563  VSGNIVTKMLMGLRNVVKLSLCTTCFEVLGEDPNLAACLPTSCRSLRHLGLIMRPFKDSV 384
            VS  I  K+L  L +V +LSL  +  E           L  SC +          + +  
Sbjct: 237  VSKIINEKLLETLTSVKRLSLALSPLE-----------LKFSCNN----------YSEWW 275

Query: 383  KVLILLLRSYPRLETLDIIFQMDSKLESILVSSEQSGELFNAYILKHLTGNLLKHLKAVK 204
             +L+L+L S P+L+ L +I ++  +   +   +            K++ G LL +L+   
Sbjct: 276  NLLVLMLDSSPKLQVLKLIGKLSGENNHLASMNWDQP--------KNIPGCLLFNLETFM 327

Query: 203  IKNFRVADEDEYHIVRYILENADFLKKMSI---LYHPSVEEDVKFRMLVAESLLAFKKVS 33
             K  +   EDE  + +YIL N + LK+ +    +Y  +  +D+   + + E L +  + S
Sbjct: 328  WKGCKRIGEDEKEVAKYILRNTNRLKRATFTREIYEENNSQDMFENLEMVEELESVVRAS 387

Query: 32   PDAVIVF 12
                + F
Sbjct: 388  KSCKLAF 394


>ref|NP_191051.2| leucine rich repeat and F-Box domain-containing protein [Arabidopsis
            thaliana] gi|79315081|ref|NP_001030863.1| leucine rich
            repeat and F-Box domain-containing protein [Arabidopsis
            thaliana] gi|145332847|ref|NP_001078289.1| leucine rich
            repeat and F-Box domain-containing protein [Arabidopsis
            thaliana] gi|63003866|gb|AAY25462.1| At3g54910
            [Arabidopsis thaliana] gi|332645789|gb|AEE79310.1|
            leucine rich repeat and F-Box domain-containing protein
            [Arabidopsis thaliana] gi|332645790|gb|AEE79311.1|
            leucine rich repeat and F-Box domain-containing protein
            [Arabidopsis thaliana] gi|332645791|gb|AEE79312.1|
            leucine rich repeat and F-Box domain-containing protein
            [Arabidopsis thaliana]
          Length = 373

 Score = 72.8 bits (177), Expect = 1e-10
 Identities = 91/352 (25%), Positives = 153/352 (43%), Gaps = 7/352 (1%)
 Frame = -3

Query: 1046 INAWVLFALKHNVRELKLFFI-----PEVLPLCIFTCHTLTVLRLKW-VNLHFPSMVSFP 885
            I  WV+ A+ H +REL++ +      P +LP  ++TC +L +L L   + L  P M   P
Sbjct: 52   IKMWVVIAVSHCLRELEVIYSSYPEKPNILPSNLYTCKSLVILELCGEIRLDVPRMAFLP 111

Query: 884  SLKTLELSYVGLYGENLTKNLFLSFPVLECLILFYCKWFNFNTITSSPPDLKVLELREVX 705
            SLKTL+L  V    E+    L  + PVLE L++      +   +T   P L++L L    
Sbjct: 112  SLKTLQLHSVRYLNEDSLHRLLSNCPVLEDLLVDLLLSDSMEKLTVVVPSLQILSLFIPH 171

Query: 704  XXXXXXXXXXSPTLKEMKYIASKPPNVSSETLSSLVR-VGFLLNEKPSVSGNIVTKMLMG 528
                      +P+LK  K I     + +S++   LV+ +  L+     V  + +  ++  
Sbjct: 172  SYEIDGIVIETPSLKYFKLI-----DHNSKSHYCLVKNMPNLIEADIDVELHSIKSLIGS 226

Query: 527  LRNVVKLSLCTTCFEVLGEDPNLAACLPTSCRSLRHLGLIMRPFKDSVKVLILLLRSYPR 348
            + +V +LS+C+      G   N           L+HL L  R    S  +L+ LL+    
Sbjct: 227  ITSVKRLSICSQAMYDGGFVFN----------QLKHLKL-CRCKGHSSDLLVRLLKDSSN 275

Query: 347  LETLDIIFQMDSKLESILVSSEQSGELFNAYILKHLTGNLLKHLKAVKIKNFRVADEDEY 168
            L+ LD + +MD      ++   Q   +    +L          L+ + +  +R   E E 
Sbjct: 276  LQALD-LSEMDYHENHDILYWHQPSTVPECMLLS---------LQTLNLSAYRGTPE-ER 324

Query: 167  HIVRYILENADFLKKMSILYHPSVEEDVKFRMLVAESLLAFKKVSPDAVIVF 12
             +  Y L+NA  LK  +I     V +D +F ML  + L    + S    +VF
Sbjct: 325  DLAVYFLKNAVHLKTTTI--KSCVFDDERFDML--KELALSSRASTTCQLVF 372


>emb|CAB41093.1| putative protein [Arabidopsis thaliana]
          Length = 320

 Score = 71.6 bits (174), Expect = 3e-10
 Identities = 90/349 (25%), Positives = 152/349 (43%), Gaps = 7/349 (2%)
 Frame = -3

Query: 1037 WVLFALKHNVRELKLFFI-----PEVLPLCIFTCHTLTVLRLKW-VNLHFPSMVSFPSLK 876
            WV+ A+ H +REL++ +      P +LP  ++TC +L +L L   + L  P M   PSLK
Sbjct: 2    WVVIAVSHCLRELEVIYSSYPEKPNILPSNLYTCKSLVILELCGEIRLDVPRMAFLPSLK 61

Query: 875  TLELSYVGLYGENLTKNLFLSFPVLECLILFYCKWFNFNTITSSPPDLKVLELREVXXXX 696
            TL+L  V    E+    L  + PVLE L++      +   +T   P L++L L       
Sbjct: 62   TLQLHSVRYLNEDSLHRLLSNCPVLEDLLVDLLLSDSMEKLTVVVPSLQILSLFIPHSYE 121

Query: 695  XXXXXXXSPTLKEMKYIASKPPNVSSETLSSLVR-VGFLLNEKPSVSGNIVTKMLMGLRN 519
                   +P+LK  K I     + +S++   LV+ +  L+     V  + +  ++  + +
Sbjct: 122  IDGIVIETPSLKYFKLI-----DHNSKSHYCLVKNMPNLIEADIDVELHSIKSLIGSITS 176

Query: 518  VVKLSLCTTCFEVLGEDPNLAACLPTSCRSLRHLGLIMRPFKDSVKVLILLLRSYPRLET 339
            V +LS+C+      G   N           L+HL L  R    S  +L+ LL+    L+ 
Sbjct: 177  VKRLSICSQAMYDGGFVFN----------QLKHLKL-CRCKGHSSDLLVRLLKDSSNLQA 225

Query: 338  LDIIFQMDSKLESILVSSEQSGELFNAYILKHLTGNLLKHLKAVKIKNFRVADEDEYHIV 159
            LD + +MD      ++   Q   +    +L          L+ + +  +R   E E  + 
Sbjct: 226  LD-LSEMDYHENHDILYWHQPSTVPECMLLS---------LQTLNLSAYRGTPE-ERDLA 274

Query: 158  RYILENADFLKKMSILYHPSVEEDVKFRMLVAESLLAFKKVSPDAVIVF 12
             Y L+NA  LK  +I     V +D +F ML  + L    + S    +VF
Sbjct: 275  VYFLKNAVHLKTTTI--KSCVFDDERFDML--KELALSSRASTTCQLVF 319


>ref|XP_002877808.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
            gi|297323646|gb|EFH54067.1| F-box family protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 446

 Score = 70.9 bits (172), Expect = 6e-10
 Identities = 91/340 (26%), Positives = 145/340 (42%), Gaps = 21/340 (6%)
 Frame = -3

Query: 1058 NGIQINAWVLFALKHNVRE--LKLFFIPEV---LPLCIFTCHTLTVLRL-KWVNLHFPSM 897
            +G+ +  W   A   +VRE  L L F   +    P  +F   TL  L+L  +V L FPS+
Sbjct: 98   DGVYVGVWATIAFARHVREFVLDLSFCHGLQIRFPSSLFCFDTLETLKLMNYVYLDFPSL 157

Query: 896  VSFPSLKTLELSYVGLYGENLTKNLFLSFPVLECLILFYCKWFNFNTI---TSSPPDLKV 726
            VS  SL+TL L  +   G+    NLF S P LE L+L   + F+ + +   T   P LK 
Sbjct: 158  VSMKSLRTLHLLSLVYKGDESVHNLFSSCPNLEHLVL--RRGFSHDYVKNFTIEAPSLKT 215

Query: 725  LELREVXXXXXXXXXXXSPTLKEMKYIASKPPNVSSETLSSLVRVGFLLNEKPS------ 564
            L L +                +E      K P++    + S+    F L E  S      
Sbjct: 216  LSLSDSF------------RARESSGYVIKAPSLKYLGIESVEGYEFFLIENASELVEAS 263

Query: 563  ---VSGNIVTKMLMGLRNVVKLSLCTTCFEVLGEDPNLAACLPTSCRSLRHLGLIMRPFK 393
               VS  +  K+L  L +  +LSL  +  ++           PT     + + L M   K
Sbjct: 264  IRNVSKIVNEKILGSLESAKRLSLDLSPLKI---------TYPTEVMYHQLVYLEMHTHK 314

Query: 392  -DSVKVLILLLRSYPRLETLDIIFQMDSKLESILVSSE--QSGELFNAYILKHLTGNLLK 222
             +   +L ++L S P+L+ L +I   +++ E++  + +    GE       K++   L+ 
Sbjct: 315  VEWWNMLTVMLDSSPKLQVLKLI-DHETRQENLEFNKQYTDQGEWNQP---KYVPECLMS 370

Query: 221  HLKAVKIKNFRVADEDEYHIVRYILENADFLKKMSILYHP 102
            HL+    +N     E+E  +  YIL NA  LKK +    P
Sbjct: 371  HLETFMWRNCNWGREEEKEVATYILRNAGQLKKATFSTDP 410