BLASTX nr result
ID: Coptis21_contig00005652
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00005652
(694 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269854.1| PREDICTED: structural maintenance of chromos... 49 5e-10
emb|CBI24628.3| unnamed protein product [Vitis vinifera] 49 5e-10
emb|CAN68529.1| hypothetical protein VITISV_032933 [Vitis vinifera] 49 5e-10
ref|XP_002510963.1| Structural maintenance of chromosome, putati... 47 9e-09
ref|XP_003542846.1| PREDICTED: structural maintenance of chromos... 48 1e-08
>ref|XP_002269854.1| PREDICTED: structural maintenance of chromosomes protein 2-1 [Vitis
vinifera]
Length = 1176
Score = 48.9 bits (115), Expect(3) = 5e-10
Identities = 36/88 (40%), Positives = 43/88 (48%), Gaps = 22/88 (25%)
Frame = -3
Query: 638 KYLINGRHGLAKHVQNLFHSLQLK--SPMF*T*RGSCHQNVR------------------ 519
KYLING VQNLFHS+QL +P F +G + +
Sbjct: 114 KYLINGHLAQPSRVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRM 173
Query: 518 --D*KGGCLKTLENKQSKVDKIDKLLDR 441
K LKTLE KQSKVD+IDKLLD+
Sbjct: 174 YETKKEAALKTLEKKQSKVDEIDKLLDQ 201
Score = 37.0 bits (84), Expect(3) = 5e-10
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = -2
Query: 444 QELLAAFEKLRKEKMQYIKWA 382
QE+L A EKLRKE+MQY++WA
Sbjct: 201 QEILPALEKLRKERMQYMQWA 221
Score = 23.1 bits (48), Expect(3) = 5e-10
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Frame = -1
Query: 319 VDYEFFVAENIRD---NGVEIIKS 257
+ YEF AE IRD +GVE +K+
Sbjct: 235 IAYEFVQAEKIRDSAVSGVEQVKT 258
>emb|CBI24628.3| unnamed protein product [Vitis vinifera]
Length = 1171
Score = 48.9 bits (115), Expect(3) = 5e-10
Identities = 36/88 (40%), Positives = 43/88 (48%), Gaps = 22/88 (25%)
Frame = -3
Query: 638 KYLINGRHGLAKHVQNLFHSLQLK--SPMF*T*RGSCHQNVR------------------ 519
KYLING VQNLFHS+QL +P F +G + +
Sbjct: 69 KYLINGHLAQPSRVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRM 128
Query: 518 --D*KGGCLKTLENKQSKVDKIDKLLDR 441
K LKTLE KQSKVD+IDKLLD+
Sbjct: 129 YETKKEAALKTLEKKQSKVDEIDKLLDQ 156
Score = 37.0 bits (84), Expect(3) = 5e-10
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = -2
Query: 444 QELLAAFEKLRKEKMQYIKWA 382
QE+L A EKLRKE+MQY++WA
Sbjct: 156 QEILPALEKLRKERMQYMQWA 176
Score = 23.1 bits (48), Expect(3) = 5e-10
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Frame = -1
Query: 319 VDYEFFVAENIRD---NGVEIIKS 257
+ YEF AE IRD +GVE +K+
Sbjct: 190 IAYEFVQAEKIRDSAVSGVEQVKT 213
>emb|CAN68529.1| hypothetical protein VITISV_032933 [Vitis vinifera]
Length = 1137
Score = 48.9 bits (115), Expect(3) = 5e-10
Identities = 36/88 (40%), Positives = 43/88 (48%), Gaps = 22/88 (25%)
Frame = -3
Query: 638 KYLINGRHGLAKHVQNLFHSLQLK--SPMF*T*RGSCHQNVR------------------ 519
KYLING VQNLFHS+QL +P F +G + +
Sbjct: 114 KYLINGHLAQPSRVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRM 173
Query: 518 --D*KGGCLKTLENKQSKVDKIDKLLDR 441
K LKTLE KQSKVD+IDKLLD+
Sbjct: 174 YETKKEAALKTLEKKQSKVDEIDKLLDQ 201
Score = 37.0 bits (84), Expect(3) = 5e-10
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = -2
Query: 444 QELLAAFEKLRKEKMQYIKWA 382
QE+L A EKLRKE+MQY++WA
Sbjct: 201 QEILPALEKLRKERMQYMQWA 221
Score = 23.1 bits (48), Expect(3) = 5e-10
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Frame = -1
Query: 319 VDYEFFVAENIRD---NGVEIIKS 257
+ YEF AE IRD +GVE +K+
Sbjct: 235 IAYEFVQAEKIRDSAVSGVEQVKT 258
>ref|XP_002510963.1| Structural maintenance of chromosome, putative [Ricinus communis]
gi|223550078|gb|EEF51565.1| Structural maintenance of
chromosome, putative [Ricinus communis]
Length = 1176
Score = 47.4 bits (111), Expect(3) = 9e-09
Identities = 35/88 (39%), Positives = 44/88 (50%), Gaps = 22/88 (25%)
Frame = -3
Query: 638 KYLINGRHGLAKHVQNLFHSLQLK--SPMF*T*RGSCHQNVR------------------ 519
KYLING+ VQNLFHS+QL +P F +G + +
Sbjct: 114 KYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRM 173
Query: 518 --D*KGGCLKTLENKQSKVDKIDKLLDR 441
K LKTLE KQSKVD+I+KLLD+
Sbjct: 174 YETKKYAALKTLEKKQSKVDEINKLLDQ 201
Score = 37.0 bits (84), Expect(3) = 9e-09
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = -2
Query: 444 QELLAAFEKLRKEKMQYIKWA 382
QE+L A EKLRKE+MQY++WA
Sbjct: 201 QEILPALEKLRKERMQYMQWA 221
Score = 20.4 bits (41), Expect(3) = 9e-09
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 319 VDYEFFVAENIRDNGV 272
+ YE+ AE IRD V
Sbjct: 235 IAYEYVQAEKIRDTAV 250
>ref|XP_003542846.1| PREDICTED: structural maintenance of chromosomes protein 2-1-like
[Glycine max]
Length = 1176
Score = 47.8 bits (112), Expect(3) = 1e-08
Identities = 35/88 (39%), Positives = 44/88 (50%), Gaps = 22/88 (25%)
Frame = -3
Query: 638 KYLINGRHGLAKHVQNLFHSLQLK--SPMF*T*RGSCHQNVR------------------ 519
KYLING+ VQNLFHS+QL +P F +G + +
Sbjct: 114 KYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRM 173
Query: 518 --D*KGGCLKTLENKQSKVDKIDKLLDR 441
K LKTLE KQSKVD+I+KLLD+
Sbjct: 174 YETKKEAALKTLEKKQSKVDEINKLLDQ 201
Score = 35.8 bits (81), Expect(3) = 1e-08
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = -2
Query: 444 QELLAAFEKLRKEKMQYIKWA 382
QE+L A EKLRKEK QY++WA
Sbjct: 201 QEILPALEKLRKEKTQYMQWA 221
Score = 20.4 bits (41), Expect(3) = 1e-08
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -1
Query: 319 VDYEFFVAENIRDNGVEIIK 260
+ YE+ AE I+DN ++
Sbjct: 235 IAYEYVQAERIKDNAASEVE 254