BLASTX nr result
ID: Coptis21_contig00005195
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00005195
(2130 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004162573.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 549 e-153
ref|XP_004149532.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 547 e-153
ref|XP_003617301.1| DEAD-box ATP-dependent RNA helicase [Medicag... 545 e-152
emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera] 537 e-150
ref|XP_002284103.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 536 e-150
>ref|XP_004162573.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis
sativus]
Length = 611
Score = 549 bits (1414), Expect = e-153
Identities = 303/501 (60%), Positives = 364/501 (72%), Gaps = 25/501 (4%)
Frame = +1
Query: 256 GLEITKLGISDEIVSALARRGITELFPIQRAVLDPAMEGRDMIGRAITGSGKTLAFGIPI 435
GLEI KLGI+ EIVSALAR+GIT+LFPIQRAVL+PAM+GRDMIGRA TG+GKTLAFGIPI
Sbjct: 106 GLEIGKLGIAPEIVSALARKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 165
Query: 436 LDKIIQNRSSHRQRQVPSALVLAPTRELARQVQKEFKESAPKLSSVCLYGGVPIMSQVRA 615
LDK+IQ + + + + P ALVLAPTRELARQV+KEF+E+AP L ++C+YGG PI Q+R
Sbjct: 166 LDKLIQFNAKNGRGRNPLALVLAPTRELARQVEKEFQEAAPSLDTICVYGGAPISQQMRQ 225
Query: 616 LGYGVDIAVGTPGRIIDLVERGALNLSEVRFVVLDEADQMLAVGFQEDVECILGYLPAKR 795
L YGVDIAVGTPGR+IDL+ RG+LNLSEV+FVVLDEADQML VGFQEDVE IL LP KR
Sbjct: 226 LDYGVDIAVGTPGRLIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKR 285
Query: 796 QSMLFSATMPSWVTQLSRKFLKDPVVIDLVGGSDQKLADGISLYSVVSTSSGKENILPTL 975
QSM+FSATMPSW+ +LSR +L +P+ IDLVG SDQKLADGISL+SVVS + GK +I+ L
Sbjct: 286 QSMMFSATMPSWILKLSRNYLNNPLTIDLVGDSDQKLADGISLFSVVSETYGKASIIGPL 345
Query: 976 ISKYGKGGKSIIFTRTKRDAEDLSRSMGSILASRALHGNMQQMQRDRTLSAFRDGRFSVL 1155
I+++GKGGK IIFT+TKRDA+ L+ +MG L ALHG++ Q QR+RTLS FRDGRF+VL
Sbjct: 346 ITEHGKGGKCIIFTQTKRDADRLAYAMGRNLRCEALHGDISQSQRERTLSGFRDGRFNVL 405
Query: 1156 VATDVAARGLDIPNVDLVIHFEIPNTSEIFVHRSGRTGRAGKKGTAVLMYTRAQRRAVTD 1335
VATDVAARGLDIPNVDLVIHFE+PN +EIFVHRSGRTGRAGKKG+ +L+Y++ Q RA+
Sbjct: 406 VATDVAARGLDIPNVDLVIHFELPNNTEIFVHRSGRTGRAGKKGSVILIYSQDQTRAIRM 465
Query: 1336 IERDIGCKFEEISRITDGIG--------------------NNTGRMYEEDRSYGRSG--- 1446
IER++GC+F E+ RIT G NN+GR S+GRSG
Sbjct: 466 IEREVGCRFNELPRITVEAGAHVDMFSGGSFGGGFGDRQMNNSGRFGNRGGSFGRSGGYE 525
Query: 1447 SPREGRYSDSFSEPQYGGYEGSRGYXXXXXXXXXXXXXXXXDSFSEPQYGGYKGSRG-YG 1623
S GR S P G + GS G F P +G G G G
Sbjct: 526 SSSFGRSIGRNSGPSSGSF-GSFG----------SRNSNSSGGFGRPDFGQSAGRFGDSG 574
Query: 1624 NESRSRGSGGF-KQKDGRFGG 1683
+ +RS G G F GR GG
Sbjct: 575 SSNRSGGFGNFGSSGSGRSGG 595
>ref|XP_004149532.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis
sativus]
Length = 593
Score = 547 bits (1410), Expect = e-153
Identities = 301/498 (60%), Positives = 362/498 (72%), Gaps = 23/498 (4%)
Frame = +1
Query: 256 GLEITKLGISDEIVSALARRGITELFPIQRAVLDPAMEGRDMIGRAITGSGKTLAFGIPI 435
GLEI KLGI+ EIVSALAR+GIT+LFPIQRAVL+PAM+GRDMIGRA TG+GKTLAFGIPI
Sbjct: 106 GLEIGKLGIAPEIVSALARKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 165
Query: 436 LDKIIQNRSSHRQRQVPSALVLAPTRELARQVQKEFKESAPKLSSVCLYGGVPIMSQVRA 615
LDK+IQ + + + + P ALVLAPTRELARQV+KEF+E+AP L ++C+YGG PI Q+R
Sbjct: 166 LDKLIQFNAKNGRGRNPLALVLAPTRELARQVEKEFQEAAPSLDTICVYGGAPISQQMRQ 225
Query: 616 LGYGVDIAVGTPGRIIDLVERGALNLSEVRFVVLDEADQMLAVGFQEDVECILGYLPAKR 795
L YGVDIAVGTPGR+IDL+ RG+LNLSEV+FVVLDEADQML VGFQEDVE IL LP KR
Sbjct: 226 LDYGVDIAVGTPGRLIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKR 285
Query: 796 QSMLFSATMPSWVTQLSRKFLKDPVVIDLVGGSDQKLADGISLYSVVSTSSGKENILPTL 975
QSM+FSATMPSW+ +LSR +L +P+ IDLVG SDQKLADGISL+SVVS + GK +I+ L
Sbjct: 286 QSMMFSATMPSWILKLSRNYLNNPLTIDLVGDSDQKLADGISLFSVVSETYGKASIIGPL 345
Query: 976 ISKYGKGGKSIIFTRTKRDAEDLSRSMGSILASRALHGNMQQMQRDRTLSAFRDGRFSVL 1155
I+++GKGGK IIFT+TKRDA+ L+ +MG L ALHG++ Q QR+RTLS FRDGRF+VL
Sbjct: 346 ITEHGKGGKCIIFTQTKRDADRLAYAMGRNLRCEALHGDISQSQRERTLSGFRDGRFNVL 405
Query: 1156 VATDVAARGLDIPNVDLVIHFEIPNTSEIFVHRSGRTGRAGKKGTAVLMYTRAQRRAVTD 1335
VATDVAARGLDIPNVDLVIHFE+PN +EIFVHRSGRTGRAGKKG+ +L+Y++ Q RA+
Sbjct: 406 VATDVAARGLDIPNVDLVIHFELPNNTEIFVHRSGRTGRAGKKGSVILIYSQDQTRAIRM 465
Query: 1336 IERDIGCKFEEISRITDGIG--------------------NNTGRMYEEDRSYGRSG--- 1446
IER++GC+F E+ RIT G NN+GR S+GRSG
Sbjct: 466 IEREVGCRFNELPRITVEAGAHVDMFSGGSFGGGFGDRQMNNSGRFGNRGGSFGRSGGYE 525
Query: 1447 SPREGRYSDSFSEPQYGGYEGSRGYXXXXXXXXXXXXXXXXDSFSEPQYGGYKGSRGYGN 1626
S GR S P G + GS G F P +G G +G+
Sbjct: 526 SSSFGRSIGRNSGPSSGSF-GSFG----------SRNSNSSGGFGRPDFGQSAGR--FGD 572
Query: 1627 ESRSRGSGGFKQKDGRFG 1680
S SGGF G FG
Sbjct: 573 SGSSNRSGGF----GNFG 586
>ref|XP_003617301.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355518636|gb|AET00260.1| DEAD-box ATP-dependent RNA
helicase [Medicago truncatula]
Length = 802
Score = 545 bits (1405), Expect = e-152
Identities = 291/485 (60%), Positives = 359/485 (74%), Gaps = 9/485 (1%)
Frame = +1
Query: 256 GLEITKLGISDEIVSALARRGITELFPIQRAVLDPAMEGRDMIGRAITGSGKTLAFGIPI 435
GLEI KLGIS +IVSAL ++GIT+LFPIQRAVL+PAM+GRDMIGRA TG+GKTLAFGIPI
Sbjct: 79 GLEIAKLGISQDIVSALEKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 138
Query: 436 LDKIIQNRSSHRQRQVPSALVLAPTRELARQVQKEFKESAPKLSSVCLYGGVPIMSQVRA 615
+DKIIQ + H + + P ALVLAPTRELA+QV+KEF E+AP L ++C+YGG PI Q+R
Sbjct: 139 MDKIIQFNAKHGRGKDPLALVLAPTRELAKQVEKEFYEAAPNLDTICVYGGTPISQQMRQ 198
Query: 616 LGYGVDIAVGTPGRIIDLVERGALNLSEVRFVVLDEADQMLAVGFQEDVECILGYLPAKR 795
L YGVDIAVGTPGRIIDL+ RGALNL EV+FV+LDEADQML VGFQEDVE IL LPA+R
Sbjct: 199 LDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVILDEADQMLQVGFQEDVEKILERLPAER 258
Query: 796 QSMLFSATMPSWVTQLSRKFLKDPVVIDLVGGSDQKLADGISLYSVVSTSSGKENILPTL 975
Q+++FSATMP+W+ QL+R +LK+P+ IDLVG SDQKLADGISLYS++S + K I+ L
Sbjct: 259 QTLMFSATMPTWIKQLTRNYLKNPLTIDLVGDSDQKLADGISLYSILSDAYVKAGIIVPL 318
Query: 976 ISKYGKGGKSIIFTRTKRDAEDLSRSMGSILASRALHGNMQQMQRDRTLSAFRDGRFSVL 1155
I ++ KGGK I+FT+TKRDA+ +S M + ALHG++ Q+QR+RTL+ FR+G F+VL
Sbjct: 319 IKEHAKGGKCIVFTQTKRDADRISHGMSKSIPCEALHGDISQIQRERTLAGFRNGHFNVL 378
Query: 1156 VATDVAARGLDIPNVDLVIHFEIPNTSEIFVHRSGRTGRAGKKGTAVLMYTRAQRRAVTD 1335
VATDVA+RGLDIPNVDLVIH+E+PN SEIFVHRSGRTGRAGKKGTA+L+YT+ Q R +
Sbjct: 379 VATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGTAILVYTQDQSRTLRT 438
Query: 1336 IERDIGCKFEEISRI---TDGIGN-NTGRMYEEDRSYGRSGSPREGRYSDSFSEPQYGGY 1503
IERD+GCKF E+ +I T +G + G + +G G R G SF + GGY
Sbjct: 439 IERDVGCKFSELPKIAVDTASLGGFSGGGRFGGGGGFGGGGGGRSG----SFGGGRSGGY 494
Query: 1504 EGSRGYXXXXXXXXXXXXXXXXDSFSEPQYGGYK----GSRGYGNE-SRSRGSGGFKQKD 1668
S G+ S+ E +YGG GS G G+ SRS GS G K
Sbjct: 495 SNSGGF--SGSRQSGGGFSGGSSSYGENRYGGSSSGRFGSFGSGDSGSRSGGSSGGFSKQ 552
Query: 1669 GRFGG 1683
G FGG
Sbjct: 553 GGFGG 557
>emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]
Length = 666
Score = 537 bits (1384), Expect = e-150
Identities = 297/503 (59%), Positives = 360/503 (71%), Gaps = 27/503 (5%)
Frame = +1
Query: 256 GLEITKLGISDEIVSALARRGITELFPIQRAVLDPAMEGRDMIGRAITGSGKTLAFGIPI 435
GLEI+KLGI+ EIVSALA +GIT+LFPIQRAVL+PAM+GRDMIGRA TG+GKTLAFGIPI
Sbjct: 114 GLEISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 173
Query: 436 LDKIIQNRSSHRQRQVPSALVLAPTRELARQVQKEFKESAPKLSSVCLYGGVPIMSQVRA 615
+DK+IQ + H + + P ALVLAPTRELARQV+KEF ESAP L ++C+YGG PI Q+ +
Sbjct: 174 MDKVIQYNAKHGRGRNPLALVLAPTRELARQVEKEFXESAPNLDTLCVYGGTPISRQMNS 233
Query: 616 LGYGVDIAVGTPGRIIDLVERGALNLSEVRFVVLDEADQMLAVGFQEDVECILGYLPAKR 795
L YGVD+ VGTPGRIIDL++RGALNLSEV+FVVLDEADQMLAVGF+EDVE IL LP R
Sbjct: 234 LDYGVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNR 293
Query: 796 QSMLFSATMPSWVTQLSRKFLKDPVVIDLVGGSDQKLADGISLYSVVSTSSGKENILPTL 975
QSM+FSATMPSW+ +L++K+LK+P+ IDLVG SDQKLA+GISLYS+ S K +I+ L
Sbjct: 294 QSMMFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPL 353
Query: 976 ISKYGKGGKSIIFTRTKRDAEDLSRSMGSILASRALHGNMQQMQRDRTLSAFRDGRFSVL 1155
I+++ KGGK I+FT+TKRDA+ L+ +M ALHG++ Q QR+RTLS FRDG F+VL
Sbjct: 354 ITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVL 413
Query: 1156 VATDVAARGLDIPNVDLVIHFEIPNTSEIFVHRSGRTGRAGKKGTAVLMYTRAQRRAVTD 1335
VATDVAARGLDIPNVDL+IH+E+PN+SEIFVHRSGRTGRAGKKGTA+L+Y Q R V
Sbjct: 414 VATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRF 473
Query: 1336 IERDIGCKFEEISRI----------TDGIGNNTGRMYEEDRS---------YGRSGSP-- 1452
IERDIGCKF E+ RI +D G G + S +GRSGS
Sbjct: 474 IERDIGCKFSELPRIAIEGGSRDMLSDMGGGGDGGRFGSFGSRGGGRVGGGFGRSGSSFG 533
Query: 1453 REGRYSDSFS--EPQYGGYEGSRGYXXXXXXXXXXXXXXXXDSFSEP-QYG---GYKGSR 1614
R G Y +S S +GG+ SR SF ++G G S
Sbjct: 534 RSGGYGESGSGRSGSFGGFGSSRS---GGGSSSSRSGNFGGSSFGRSGEFGDTIGSDRSS 590
Query: 1615 GYGNESRSRGSGGFKQKDGRFGG 1683
G+GN S S S GF G FGG
Sbjct: 591 GFGNSSGSHRSSGF----GNFGG 609
>ref|XP_002284103.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Vitis
vinifera]
Length = 666
Score = 536 bits (1382), Expect = e-150
Identities = 297/503 (59%), Positives = 360/503 (71%), Gaps = 27/503 (5%)
Frame = +1
Query: 256 GLEITKLGISDEIVSALARRGITELFPIQRAVLDPAMEGRDMIGRAITGSGKTLAFGIPI 435
GLEI+KLGI+ EIVSALA +GIT+LFPIQRAVL+PAM+GRDMIGRA TG+GKTLAFGIPI
Sbjct: 114 GLEISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 173
Query: 436 LDKIIQNRSSHRQRQVPSALVLAPTRELARQVQKEFKESAPKLSSVCLYGGVPIMSQVRA 615
+DK+IQ + H + + P ALVLAPTRELARQV+KEF ESAP L ++C+YGG PI Q+ +
Sbjct: 174 MDKVIQYNAKHGRGRNPLALVLAPTRELARQVEKEFCESAPNLDTLCVYGGTPISRQMNS 233
Query: 616 LGYGVDIAVGTPGRIIDLVERGALNLSEVRFVVLDEADQMLAVGFQEDVECILGYLPAKR 795
L YGVD+ VGTPGRIIDL++RGALNLSEV+FVVLDEADQMLAVGF+EDVE IL LP R
Sbjct: 234 LDYGVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNR 293
Query: 796 QSMLFSATMPSWVTQLSRKFLKDPVVIDLVGGSDQKLADGISLYSVVSTSSGKENILPTL 975
QSM+FSATMPSW+ +L++K+LK+P+ IDLVG SDQKLA+GISLYS+ S K +I+ L
Sbjct: 294 QSMMFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPL 353
Query: 976 ISKYGKGGKSIIFTRTKRDAEDLSRSMGSILASRALHGNMQQMQRDRTLSAFRDGRFSVL 1155
I+++ KGGK I+FT+TKRDA+ L+ +M ALHG++ Q QR+RTLS FRDG F+VL
Sbjct: 354 ITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVL 413
Query: 1156 VATDVAARGLDIPNVDLVIHFEIPNTSEIFVHRSGRTGRAGKKGTAVLMYTRAQRRAVTD 1335
VATDVAARGLDIPNVDL+IH+E+PN+SEIFVHRSGRTGRAGKKGTA+L+Y Q R V
Sbjct: 414 VATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRF 473
Query: 1336 IERDIGCKFEEISRI----------TDGIGNNTGRMYEEDRS---------YGRSGSP-- 1452
IERDIGCKF E+ RI +D G G + S +GRSGS
Sbjct: 474 IERDIGCKFSELPRIAIEGGSRDMFSDMGGGGDGGRFGSFGSRGGGRVGGGFGRSGSSFG 533
Query: 1453 REGRYSDSFS--EPQYGGYEGSRGYXXXXXXXXXXXXXXXXDSFSEP-QYG---GYKGSR 1614
R G Y +S S +GG+ SR SF ++G G S
Sbjct: 534 RSGGYGESGSGRSGSFGGFGSSRS---GGGSSSSRSGNFGGSSFGRSGEFGDTIGSDRSS 590
Query: 1615 GYGNESRSRGSGGFKQKDGRFGG 1683
G+GN S S S GF G FGG
Sbjct: 591 GFGNSSGSHRSSGF----GNFGG 609