BLASTX nr result

ID: Coptis21_contig00004990 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004990
         (307 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324982.1| predicted protein [Populus trichocarpa] gi|2...    77   2e-12
ref|XP_002333571.1| predicted protein [Populus trichocarpa] gi|2...    77   2e-12
ref|XP_002514326.1| conserved hypothetical protein [Ricinus comm...    72   4e-11
ref|XP_002324980.1| predicted protein [Populus trichocarpa] gi|2...    72   5e-11
ref|XP_002281155.2| PREDICTED: uncharacterized protein LOC100266...    70   1e-10

>ref|XP_002324982.1| predicted protein [Populus trichocarpa] gi|222866416|gb|EEF03547.1|
           predicted protein [Populus trichocarpa]
          Length = 338

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 37/58 (63%), Positives = 45/58 (77%)
 Frame = -3

Query: 302 GSGGVGHVETDTFLQVVVGFGIVSKFDPEFLRKLVMENPSRRDLPKLASALGLGDKMG 129
           G G VG  E   FLQ+V+GFG+ S+FD EFLRKLV EN SRRD+ KLA+A+G G+KMG
Sbjct: 241 GGGVVGPAEAVMFLQMVLGFGLKSRFDEEFLRKLVAENASRRDMAKLAAAIGFGEKMG 298


>ref|XP_002333571.1| predicted protein [Populus trichocarpa] gi|222837220|gb|EEE75599.1|
           predicted protein [Populus trichocarpa]
          Length = 498

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 37/58 (63%), Positives = 45/58 (77%)
 Frame = -3

Query: 302 GSGGVGHVETDTFLQVVVGFGIVSKFDPEFLRKLVMENPSRRDLPKLASALGLGDKMG 129
           G G VG  E   FLQ+V+GFG+ S+FD EFLRKLV EN SRRD+ KLA+A+G G+KMG
Sbjct: 241 GGGVVGPAEAVMFLQMVLGFGLKSRFDEEFLRKLVAENASRRDMAKLAAAIGFGEKMG 298


>ref|XP_002514326.1| conserved hypothetical protein [Ricinus communis]
           gi|223546782|gb|EEF48280.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 547

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 38/65 (58%), Positives = 47/65 (72%), Gaps = 4/65 (6%)
 Frame = -3

Query: 305 EGSGG----VGHVETDTFLQVVVGFGIVSKFDPEFLRKLVMENPSRRDLPKLASALGLGD 138
           EG GG    VG  E   FLQ+VV FG+ ++FD E+LRKLVMEN +RRD+ KLA A+G G+
Sbjct: 233 EGGGGSSGVVGPAEAVMFLQMVVVFGLKARFDEEYLRKLVMENATRRDMAKLAVAVGFGE 292

Query: 137 KMGGM 123
           KM GM
Sbjct: 293 KMEGM 297


>ref|XP_002324980.1| predicted protein [Populus trichocarpa] gi|222866414|gb|EEF03545.1|
           predicted protein [Populus trichocarpa]
          Length = 49

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 33/48 (68%), Positives = 42/48 (87%)
 Frame = -3

Query: 266 FLQVVVGFGIVSKFDPEFLRKLVMENPSRRDLPKLASALGLGDKMGGM 123
           FLQ+V+GFG+ S+FD EFLRKLV E+ SRRD+ KLA+A+G G+KMGGM
Sbjct: 2   FLQMVLGFGLKSRFDEEFLRKLVAESASRRDMAKLAAAIGFGEKMGGM 49


>ref|XP_002281155.2| PREDICTED: uncharacterized protein LOC100266187 [Vitis vinifera]
          Length = 533

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 36/62 (58%), Positives = 43/62 (69%), Gaps = 4/62 (6%)
 Frame = -3

Query: 302 GSGG----VGHVETDTFLQVVVGFGIVSKFDPEFLRKLVMENPSRRDLPKLASALGLGDK 135
           G GG    +G  E   F+Q+V GFG+  KFD EFLRK V+E  SRRD+PKLA ALG G+K
Sbjct: 222 GDGGEGSMIGPTEAAMFMQMVAGFGLKPKFDEEFLRKQVLEFASRRDMPKLAIALGFGEK 281

Query: 134 MG 129
           MG
Sbjct: 282 MG 283


Top