BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004978
         (3974 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275560.2| PREDICTED: 5'-3' exoribonuclease 4-like [Vit...  1035   0.0  
emb|CBI26575.3| unnamed protein product [Vitis vinifera]             1020   0.0  
ref|XP_002519992.1| 5'->3' exoribonuclease, putative [Ricinus co...   887   0.0  
emb|CAN59715.1| hypothetical protein VITISV_006076 [Vitis vinifera]   776   0.0  
ref|XP_003557530.1| PREDICTED: 5'-3' exoribonuclease 4-like [Bra...   766   0.0  

>ref|XP_002275560.2| PREDICTED: 5'-3' exoribonuclease 4-like [Vitis vinifera]
          Length = 834

 Score = 1035 bits (2675), Expect = 0.0
 Identities = 524/792 (66%), Positives = 601/792 (75%), Gaps = 9/792 (1%)
 Frame = +3

Query: 390  MGIPAFYRYLVEKYPLSXXXXXXXXXXXXXXXXSSL----PNPNGIEFDNLYLDMNGIIH 557
            MGIPAFYR+L ++YPL+                 ++    PNPNG EFDNLYLDMNGIIH
Sbjct: 1    MGIPAFYRWLADRYPLAVVNAVEDRPAVVNGVSVAVDTTRPNPNGNEFDNLYLDMNGIIH 60

Query: 558  PCFHPEGQEAPKTYEQVFKAVFKYIDRIFSIVRPRKLLFLAIDGVAPRAKMNQQRGRRFX 737
            PCFHPEG  APKTY  VFKAVFKYIDRIFS+VRPRKLL++AIDGVAPRAKMNQQR RRF 
Sbjct: 61   PCFHPEGLPAPKTYTDVFKAVFKYIDRIFSLVRPRKLLYMAIDGVAPRAKMNQQRARRFR 120

Query: 738  XXXXXXXXXVGEESLREVFESEGQHLSAL-RCDSLDSNVITPGTEFMASLSSALQYYIRL 914
                      G E L+ VFESE + L+ L +   LDSNVITPGTEFMA LSSAL+YYI L
Sbjct: 121  AAKEAADDASGTERLKTVFESEMEMLALLDQTKKLDSNVITPGTEFMALLSSALKYYIHL 180

Query: 915  RMNTDPGWWGIKVILSDANVVGEGEHKIMSYIRLQRNRRGFDPNTRHCMYGLDADLIMLA 1094
            RMN DPGW GIKVILSDANV GEGEHKIMSYIRLQRN  GFDPNTRHC+YGLDADLIMLA
Sbjct: 181  RMNLDPGWRGIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLA 240

Query: 1095 LATHEIHFSILREDVRKAQQSVKDPQIKKSSLRIGRRERYKETKLREVSGEEANDYISRQ 1274
            LATHEIHFSILREDV KA +  K+ + +K SL + +R + K+    EV GE+  D+ISRQ
Sbjct: 241  LATHEIHFSILREDVHKAYRKDKNNKPRKDSLLVNKRGKSKQG---EVGGEDIEDFISRQ 297

Query: 1275 QFQFLNVWVLRDYLTHDMQVPNSTVKLDVERLIDDFVFICLFVGNDFLPHVPSLEISEGA 1454
            +FQFLN+W LRDYL HDM +P+ ++K D+ERLIDDFVF+CLFVGNDFLPH+PSLEISEGA
Sbjct: 298  KFQFLNIWTLRDYLAHDMSIPDRSLKTDLERLIDDFVFMCLFVGNDFLPHMPSLEISEGA 357

Query: 1455 IDLLMNVYKKEFVLMGGYLTDSYKVNLKRVEHFVQAVAYHENAIFRKRRQVD----MRFQ 1622
            IDLLM VYKKEFV +GGYLT+S +V L+RVE F+Q V  HENAIFRKR QV     +RFQ
Sbjct: 358  IDLLMTVYKKEFVQIGGYLTNSSEVYLERVERFMQVVGSHENAIFRKRSQVQKKRGVRFQ 417

Query: 1623 GGSNAQRRTSDKSRKLSHAKQNNSENFWSSINXXXXXXXXXXXXXXXDKSQGSGHNATPN 1802
            G SN ++  SD S       Q  + +  SS+                 + Q S  N    
Sbjct: 418  GSSN-KKTVSDYSTTPCVEPQGMTGSSGSSLEPRKTPFCQDSKNSTVKEIQCST-NCIST 475

Query: 1803 GASTTTDNIRLGEEGWKERFYTEKFEVKTEDERDKIRKHAVLKYIEGMCWVMHYYYEGVC 1982
            GA++  D I+LGE+GWKERFY EKFE KTED+R+++R+HAVLKYIEG+CWVMHYYY+GVC
Sbjct: 476  GANSLVDKIKLGEDGWKERFYVEKFEAKTEDDRERVRRHAVLKYIEGICWVMHYYYQGVC 535

Query: 1983 SWQWFYPYHYAPFASDFLNIEHCEIHFTPGTPFKPFDQLMGVLPAASAHALPLCYRELMT 2162
            SWQWFYPYHYAPFASD   ++  +I FT G PFKPFDQLMGVLPAASAHALPL YR+LM 
Sbjct: 536  SWQWFYPYHYAPFASDIYGLDQLDIQFTLGKPFKPFDQLMGVLPAASAHALPLYYRKLMM 595

Query: 2163 DSSSPILDFYPTDFELDMFGKRHAWQAICKLPFIEESRLLLEIAKVEHTLTDEEKRRNSF 2342
            D +SPILDFYP DFELDM GKR+ WQAICKLPFI+ESRLL EIAKVE TLTD+EK RN  
Sbjct: 596  DETSPILDFYPADFELDMNGKRYPWQAICKLPFIKESRLLAEIAKVESTLTDKEKLRNRL 655

Query: 2343 GMDLLFVHISHPLAADIIIFFERNKDHPKLAKAKVKRRIDPKFSGGMNGFMYISDKPVWP 2522
            GMD LF+HIS PLA  I  F++R KDHPKL  AKVKR+IDPKFSGGMNG+MYISD+PVWP
Sbjct: 656  GMDALFIHISDPLAVKIFSFYKRKKDHPKLPMAKVKRKIDPKFSGGMNGYMYISDRPVWP 715

Query: 2523 LEVCSSINDMEKIAMNKVISVFYKYPTSHTHIPRPPEGVVMPGMSVRKEDIFPAPVLWHE 2702
             E  S I DME IA NKVIS+FYK P+ H HIPRP EGV++PG +V K  +   PVLWHE
Sbjct: 716  AEFYSPIEDMEMIAQNKVISIFYKCPSFHPHIPRPLEGVILPGKTVIKPHLLRPPVLWHE 775

Query: 2703 KSVVLGRLHSER 2738
             S V GR  SER
Sbjct: 776  TSAVCGRKFSER 787


>emb|CBI26575.3| unnamed protein product [Vitis vinifera]
          Length = 845

 Score = 1020 bits (2637), Expect = 0.0
 Identities = 520/793 (65%), Positives = 596/793 (75%), Gaps = 10/793 (1%)
 Frame = +3

Query: 390  MGIPAFYRYLVEKYPLSXXXXXXXXXXXXXXXXSSLPNPNGIE-----FDNLYLDMNGII 554
            MGIPAFYR+L ++YPL+                      N +E     FDNLYLDMNGII
Sbjct: 1    MGIPAFYRWLADRYPLAVV--------------------NAVEDRPAVFDNLYLDMNGII 40

Query: 555  HPCFHPEGQEAPKTYEQVFKAVFKYIDRIFSIVRPRKLLFLAIDGVAPRAKMNQQRGRRF 734
            HPCFHPEG  APKTY  VFKAVFKYIDRIFS+VRPRKLL++AIDGVAPRAKMNQQR RRF
Sbjct: 41   HPCFHPEGLPAPKTYTDVFKAVFKYIDRIFSLVRPRKLLYMAIDGVAPRAKMNQQRARRF 100

Query: 735  XXXXXXXXXXVGEESLREVFESEGQHLSAL-RCDSLDSNVITPGTEFMASLSSALQYYIR 911
                       G E L+ VFESE + L+ L +   LDSNVITPGTEFMA LSSAL+YYI 
Sbjct: 101  RAAKEAADDASGTERLKTVFESEMEMLALLDQTKKLDSNVITPGTEFMALLSSALKYYIH 160

Query: 912  LRMNTDPGWWGIKVILSDANVVGEGEHKIMSYIRLQRNRRGFDPNTRHCMYGLDADLIML 1091
            LRMN DPGW GIKVILSDANV GEGEHKIMSYIRLQRN  GFDPNTRHC+YGLDADLIML
Sbjct: 161  LRMNLDPGWRGIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 220

Query: 1092 ALATHEIHFSILREDVRKAQQSVKDPQIKKSSLRIGRRERYKETKLREVSGEEANDYISR 1271
            ALATHEIHFSILREDV KA +  K+ + +K SL + +R + K+    EV GE+  D+ISR
Sbjct: 221  ALATHEIHFSILREDVHKAYRKDKNNKPRKDSLLVNKRGKSKQG---EVGGEDIEDFISR 277

Query: 1272 QQFQFLNVWVLRDYLTHDMQVPNSTVKLDVERLIDDFVFICLFVGNDFLPHVPSLEISEG 1451
            Q+FQFLN+W LRDYL HDM +P+ ++K D+ERLIDDFVF+CLFVGNDFLPH+PSLEISEG
Sbjct: 278  QKFQFLNIWTLRDYLAHDMSIPDRSLKTDLERLIDDFVFMCLFVGNDFLPHMPSLEISEG 337

Query: 1452 AIDLLMNVYKKEFVLMGGYLTDSYKVNLKRVEHFVQAVAYHENAIFRKRRQVD----MRF 1619
            AIDLLM VYKKEFV +GGYLT+S +V L+RVE F+Q V  HENAIFRKR QV     +RF
Sbjct: 338  AIDLLMTVYKKEFVQIGGYLTNSSEVYLERVERFMQVVGSHENAIFRKRSQVQKKRGVRF 397

Query: 1620 QGGSNAQRRTSDKSRKLSHAKQNNSENFWSSINXXXXXXXXXXXXXXXDKSQGSGHNATP 1799
            QG SN ++  SD S       Q  + +  SS+                 + Q S  N   
Sbjct: 398  QGSSN-KKTVSDYSTTPCVEPQGMTGSSGSSLEPRKTPFCQDSKNSTVKEIQCST-NCIS 455

Query: 1800 NGASTTTDNIRLGEEGWKERFYTEKFEVKTEDERDKIRKHAVLKYIEGMCWVMHYYYEGV 1979
             GA++  D I+LGE+GWKERFY EKFE KTED+R+++R+HAVLKYIEG+CWVMHYYY+GV
Sbjct: 456  TGANSLVDKIKLGEDGWKERFYVEKFEAKTEDDRERVRRHAVLKYIEGICWVMHYYYQGV 515

Query: 1980 CSWQWFYPYHYAPFASDFLNIEHCEIHFTPGTPFKPFDQLMGVLPAASAHALPLCYRELM 2159
            CSWQWFYPYHYAPFASD   ++  +I FT G PFKPFDQLMGVLPAASAHALPL YR+LM
Sbjct: 516  CSWQWFYPYHYAPFASDIYGLDQLDIQFTLGKPFKPFDQLMGVLPAASAHALPLYYRKLM 575

Query: 2160 TDSSSPILDFYPTDFELDMFGKRHAWQAICKLPFIEESRLLLEIAKVEHTLTDEEKRRNS 2339
             D +SPILDFYP DFELDM GKR+ WQAICKLPFI+ESRLL EIAKVE TLTD+EK RN 
Sbjct: 576  MDETSPILDFYPADFELDMNGKRYPWQAICKLPFIKESRLLAEIAKVESTLTDKEKLRNR 635

Query: 2340 FGMDLLFVHISHPLAADIIIFFERNKDHPKLAKAKVKRRIDPKFSGGMNGFMYISDKPVW 2519
             GMD LF+HIS PLA  I  F++R KDHPKL  AKVKR+IDPKFSGGMNG+MYISD+PVW
Sbjct: 636  LGMDALFIHISDPLAVKIFSFYKRKKDHPKLPMAKVKRKIDPKFSGGMNGYMYISDRPVW 695

Query: 2520 PLEVCSSINDMEKIAMNKVISVFYKYPTSHTHIPRPPEGVVMPGMSVRKEDIFPAPVLWH 2699
            P E  S I DME IA NKVIS+FYK P+ H HIPRP EGV++PG +V K  +   PVLWH
Sbjct: 696  PAEFYSPIEDMEMIAQNKVISIFYKCPSFHPHIPRPLEGVILPGKTVIKPHLLRPPVLWH 755

Query: 2700 EKSVVLGRLHSER 2738
            E S V GR  SER
Sbjct: 756  ETSAVCGRKFSER 768


>ref|XP_002519992.1| 5'->3' exoribonuclease, putative [Ricinus communis]
            gi|223540756|gb|EEF42316.1| 5'->3' exoribonuclease,
            putative [Ricinus communis]
          Length = 1545

 Score =  887 bits (2291), Expect = 0.0
 Identities = 461/819 (56%), Positives = 575/819 (70%), Gaps = 5/819 (0%)
 Frame = +3

Query: 390  MGIPAFYRYLVEKYPLSXXXXXXXXXXXXXXXX----SSLPNPNGIEFDNLYLDMNGIIH 557
            MGIP+FY++L EKYP +                    ++LPNPNGIEFDNLYLDMNGIIH
Sbjct: 1    MGIPSFYKWLTEKYPDTVVDVIEARRRMGNGVLLPINTALPNPNGIEFDNLYLDMNGIIH 60

Query: 558  PCFHPEGQEAPKTYEQVFKAVFKYIDRIFSIVRPRKLLFLAIDGVAPRAKMNQQRGRRFX 737
            PCFHP     PKTYE+VF+ VF YID+IFS+VRPRKLLFL IDGVAPRAKMNQQR RRF 
Sbjct: 61   PCFHPSDLPPPKTYEEVFRNVFMYIDKIFSMVRPRKLLFLGIDGVAPRAKMNQQRSRRFR 120

Query: 738  XXXXXXXXXVGEESLREVFESEGQHLSALRCDS-LDSNVITPGTEFMASLSSALQYYIRL 914
                     +    +++  E EG++ ++L+  + LDSNVITPGTEFM  LSSAL+YYIRL
Sbjct: 121  AAKEAEKEAL---KMKQFIELEGENSTSLKEPAVLDSNVITPGTEFMDLLSSALRYYIRL 177

Query: 915  RMNTDPGWWGIKVILSDANVVGEGEHKIMSYIRLQRNRRGFDPNTRHCMYGLDADLIMLA 1094
            R+N D GW GIKVILSD+NV GEGEHKIMSYIRLQR+  G+DPNTRHC+YGLDADLIMLA
Sbjct: 178  RVNRDSGWRGIKVILSDSNVPGEGEHKIMSYIRLQRDLPGYDPNTRHCLYGLDADLIMLA 237

Query: 1095 LATHEIHFSILREDVRKAQQSVKDPQIKKSSLRIGRRERYKETKLREVSGEEANDYISRQ 1274
            LATHE+HF+ILRE   +   S +    KK       +++    K + +  +   +Y+SR 
Sbjct: 238  LATHEVHFTILREVCAQKHSSKRG---KKHKFVWNPQKKANSKKKKWMPVKTLEEYVSRL 294

Query: 1275 QFQFLNVWVLRDYLTHDMQVPNSTVKLDVERLIDDFVFICLFVGNDFLPHVPSLEISEGA 1454
             F+FL +W LR++L +DM++PN  ++ D+ERLIDDF+F+CLFVGNDFLPH+P+LEIS+GA
Sbjct: 295  NFKFLYIWALREHLEYDMRIPNLALQTDLERLIDDFIFMCLFVGNDFLPHIPTLEISQGA 354

Query: 1455 IDLLMNVYKKEFVLMGGYLTDSYKVNLKRVEHFVQAVAYHENAIFRKRRQVDMRFQGGSN 1634
            IDLLM VY+KEF  MGGYLT+S++++L RVEHF+QAV  H++AIFR+  Q         +
Sbjct: 355  IDLLMKVYRKEFRRMGGYLTNSFELDLTRVEHFIQAVGLHDDAIFRQHIQKLKE----KS 410

Query: 1635 AQRRTSDKSRKLSHAKQNNSENFWSSINXXXXXXXXXXXXXXXDKSQGSGHNATPNGAST 1814
            A++      RKL    QN+      SI+               +K+ G   +   +  S 
Sbjct: 411  ARKEERSSKRKLEKLLQNDPHA--ESISGGSSLLM--------EKAGGMNFDEPIHHLSA 460

Query: 1815 TTDNIRLGEEGWKERFYTEKFEVKTEDERDKIRKHAVLKYIEGMCWVMHYYYEGVCSWQW 1994
              D     E+ WKER+Y +KF+ KT+DE++ IR+  V+KY+EG+CWVM YYYEGVCSWQW
Sbjct: 461  GIDTGDKEEDDWKERYYAKKFKAKTKDEQESIRRDVVIKYMEGLCWVMRYYYEGVCSWQW 520

Query: 1995 FYPYHYAPFASDFLNIEHCEIHFTPGTPFKPFDQLMGVLPAASAHALPLCYRELMTDSSS 2174
            FYPYHYAPFASDF  ++  +I FT G PFKP DQLMGVLPAASAHALP+ YR+LMTD SS
Sbjct: 521  FYPYHYAPFASDFYGLDDLKIQFTLGVPFKPMDQLMGVLPAASAHALPMLYRKLMTDESS 580

Query: 2175 PILDFYPTDFELDMFGKRHAWQAICKLPFIEESRLLLEIAKVEHTLTDEEKRRNSFGMDL 2354
            PILDFYP+DFELDM GKR  WQAICKLPFI+ESRLL EI KVEHTLTD+E+RRNS G + 
Sbjct: 581  PILDFYPSDFELDMNGKRRKWQAICKLPFIDESRLLSEITKVEHTLTDDERRRNSLGSNF 640

Query: 2355 LFVHISHPLAADIIIFFERNKDHPKLAKAKVKRRIDPKFSGGMNGFMYISDKPVWPLEVC 2534
            LFVHISHPLA  II FF++N+D   L K      IDP+ SGGMNGF+YISD  V P EV 
Sbjct: 641  LFVHISHPLADMIIYFFKQNRDPNVLLK------IDPELSGGMNGFVYISDNAVCPEEVS 694

Query: 2535 SSINDMEKIAMNKVISVFYKYPTSHTHIPRPPEGVVMPGMSVRKEDIFPAPVLWHEKSVV 2714
            S ++ M  IA N+VISV Y+YP  H HI R P+GV++PG  +       +P+L HEK V 
Sbjct: 695  SPVDGMRMIAHNRVISVSYRYPLFHYHISRLPQGVILPGKDI-------SPLLQHEKVVP 747

Query: 2715 LGRLHSERPVPNSISGSCLAKLAHRLVLEYYTEKMKENV 2831
             G + S RP+P S+SG+ LA LAHRLV      K  +N+
Sbjct: 748  AG-VSSRRPIPRSVSGTHLANLAHRLVSSCTPIKQDDNL 785


>emb|CAN59715.1| hypothetical protein VITISV_006076 [Vitis vinifera]
          Length = 1102

 Score =  776 bits (2005), Expect = 0.0
 Identities = 405/638 (63%), Positives = 469/638 (73%), Gaps = 13/638 (2%)
 Frame = +3

Query: 402  AFYRYLVEKYPLSXXXXXXXXXXXXXXXXSSL----PNPNGIEFDNLYLDMNGIIHPCFH 569
            AFYR+L ++YPL+                 ++    PNPNG EFDNLYLDMNGIIHPCFH
Sbjct: 136  AFYRWLADRYPLAVVNAVEDRPAVVNGVSVAVDTTRPNPNGNEFDNLYLDMNGIIHPCFH 195

Query: 570  PEGQEAPKTYEQVFKAVFKYIDRIFSIVRPRKLLFLAIDGVAPRAKMNQQRGRRFXXXXX 749
            PEG  APKTY  VFKAVFKYIDRIFS+VRPRKLL++AIDGVAPRAKMNQQR RRF     
Sbjct: 196  PEGLPAPKTYTDVFKAVFKYIDRIFSLVRPRKLLYMAIDGVAPRAKMNQQRARRFRAAKE 255

Query: 750  XXXXXVGEESLREVFESEGQHLSAL-RCDSLDSNVITPGTEFMASLSSALQYYIRLRMNT 926
                  G E L+ VFESE + L+ L +   LDSNVITPGTEFMA LSSAL+YYI LRMN 
Sbjct: 256  AADDASGTERLKTVFESEMEMLALLDQTKKLDSNVITPGTEFMALLSSALKYYIHLRMNL 315

Query: 927  DPGWWGIKVILSDANVVGEGEHKIMSYIRLQRNRRGFDPNTRHCMYGLDADLIMLALATH 1106
            DPGW GIKVILSDANV GEGEHKIMSYIRLQRN  GFDPNTRHC+YGLDADLIMLALATH
Sbjct: 316  DPGWRGIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATH 375

Query: 1107 EIHFSILREDVRKAQQSVKDPQIKKSSLRIGRRERYKETKLREVSGEEANDYISRQQFQF 1286
            EIHFSILREDV KA +  K+ + +K SL + +R   K+    EV GE+  D+ISRQ+FQF
Sbjct: 376  EIHFSILREDVHKAYRKDKNNKPRKDSLLVNKRGXSKQG---EVGGEDIEDFISRQKFQF 432

Query: 1287 LNVWVLRDYLTHDMQVPNSTVKLDVERLIDDFVFICLFVGNDFLPHVPSLEISEGAIDLL 1466
            LN+W LRDYL HDM +P+ ++K D+ERLIDDFVF+CLFVGNDFLPH+PSLEISEGAIDLL
Sbjct: 433  LNIWTLRDYLAHDMSIPDRSLKTDLERLIDDFVFMCLFVGNDFLPHMPSLEISEGAIDLL 492

Query: 1467 MNVYKKEFVLMGGYLTDSYKVNLKRVEHFVQAVAYHENAIFRKRRQVD----MRFQGGSN 1634
            M VYKKEFV +GGYLT+S +V L+RVE F+Q V  HENAIFRKR QV     +RFQG SN
Sbjct: 493  MTVYKKEFVQIGGYLTNSSEVYLERVERFMQVVGSHENAIFRKRSQVQKKRGVRFQGSSN 552

Query: 1635 AQRRTSDKSRKLSHAKQNNSENFWSSINXXXXXXXXXXXXXXXDKSQGSGHNATPNGAST 1814
             ++  SD S       Q  + +  SS+                          TP     
Sbjct: 553  -KKTVSDYSTTPCVEPQGMTGSSGSSLEP----------------------RKTP--FCQ 587

Query: 1815 TTDNIRLGEEGWKERFYTEKFEVKTEDERDKIRKHAVLKYIEGMCWVMHYYYEGVCSWQW 1994
             + NI+LGE+GWKERFY EKFE KTED+R+++R+HAVLKYIEG+CWVMHYYY+GVCSWQW
Sbjct: 588  DSKNIKLGEDGWKERFYVEKFEAKTEDDRERVRRHAVLKYIEGICWVMHYYYQGVCSWQW 647

Query: 1995 FYPYHYAPFASDFLNIEHCEIHFTPGTPFKPFDQLMGVLPAA----SAHALPLCYRELMT 2162
            FYPYHYAPFASD   ++  +I FT G PFKPFDQLMGVLPAA    SAHALPL YR+LM 
Sbjct: 648  FYPYHYAPFASDIYGLDQLDIQFTLGKPFKPFDQLMGVLPAARCTYSAHALPLYYRKLMM 707

Query: 2163 DSSSPILDFYPTDFELDMFGKRHAWQAICKLPFIEESR 2276
            D +SPILDFYP DFELDM GKR+ WQ + + P ++ SR
Sbjct: 708  DETSPILDFYPADFELDMNGKRYPWQ-LGETPCLDFSR 744



 Score =  180 bits (456), Expect = 3e-42
 Identities = 116/265 (43%), Positives = 147/265 (55%), Gaps = 18/265 (6%)
 Frame = +3

Query: 2217 FGKRHAWQAICKLPFIEESRLLLEIAKVEHTLTDEEKRRNSFGMDLLFVHISHPLAADII 2396
            F   +   AICKLPFI+ESRLL EIAKVE TLTD+EK RN  GMD LF+HIS PLA  I 
Sbjct: 799  FEDXYFMHAICKLPFIKESRLLAEIAKVESTLTDKEKLRNRLGMDALFIHISDPLAVKIF 858

Query: 2397 IFFERNKDHPKLAKAKVKRRIDPKF-----SGGMNGFMYISDKPVWPLEVCSSINDMEKI 2561
             F++R KDHPKL  AKVKR+IDPKF     +  +      + K  + L + SS N++ K+
Sbjct: 859  SFYKRKKDHPKLPMAKVKRKIDPKFRLTPQTQALQNLTVTTSKLPYALPLISS-NELSKV 917

Query: 2562 AMNKVISVFYKYPTSHTH-----IPRPPEGVVMPGM----SVRKEDIFPAPVLWHEKSVV 2714
            +  +   V     T             P    +P +    +V K  +   PVLWHE S V
Sbjct: 918  SAGRYAYVPXVQRTQADXGGLRWFKSQPTICKLPNLELLHTVIKPHLLRPPVLWHETSAV 977

Query: 2715 LGRLHSERPVPNSISGSCLAKLAHRLVLEYYTEKMKENVDPAVLDGLFSVDAL--SNSKE 2888
             GR  SERP+PNS+SG CLAKLAHRLV EY   K +E +    L      D L  S SKE
Sbjct: 978  CGRKFSERPIPNSVSGPCLAKLAHRLVFEYCLAKRQETLGRGELSDHIGPDTLRQSPSKE 1037

Query: 2889 PILEKKMD--DSSCVNVVKPEKKES 2957
                + +D  + SCV+    ++K S
Sbjct: 1038 TGNARGIDGYNESCVDGRSRKRKRS 1062


>ref|XP_003557530.1| PREDICTED: 5'-3' exoribonuclease 4-like [Brachypodium distachyon]
          Length = 992

 Score =  766 bits (1979), Expect = 0.0
 Identities = 405/811 (49%), Positives = 523/811 (64%), Gaps = 9/811 (1%)
 Frame = +3

Query: 390  MGIPAFYRYLVEKYP-----LSXXXXXXXXXXXXXXXXSSLPNPNGIEFDNLYLDMNGII 554
            MG+PAFYR+L ++YP      +                   PNPNG+EFDNLYLDMNGII
Sbjct: 1    MGVPAFYRWLADRYPQTVSDAAEEEPVELEPGAFVPVDLRRPNPNGLEFDNLYLDMNGII 60

Query: 555  HPCFHPEGQEAPKTYEQVFKAVFKYIDRIFSIVRPRKLLFLAIDGVAPRAKMNQQRGRRF 734
            HPCFHPEG+ +P TY+QVFK++F YID +F +VRPRKL+++AIDGVAPRAKMNQQR RRF
Sbjct: 61   HPCFHPEGRPSPTTYDQVFKSIFDYIDHLFCLVRPRKLVYMAIDGVAPRAKMNQQRSRRF 120

Query: 735  XXXXXXXXXXVGEESLREVFESEGQHL-SALRCDSLDSNVITPGTEFMASLSSALQYYIR 911
                        EE LR  FE+EG+ L    + +++DSNVITPGT+FM  LSSALQYYI+
Sbjct: 121  RAAKDAADAAAEEERLRLDFEAEGRTLVQKQKSEAIDSNVITPGTQFMFVLSSALQYYIQ 180

Query: 912  LRMNTDPGWWGIKVILSDANVVGEGEHKIMSYIRLQRNRRGFDPNTRHCMYGLDADLIML 1091
            LR+N  PGW  +KV+LSD+NV GEGEHKIMSYIRLQRN  GFDPNTRHC+YGLDADLIML
Sbjct: 181  LRLNHTPGWQSVKVMLSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240

Query: 1092 ALATHEIHFSILREDVRKAQQSVKDPQIKK-SSLRIGRRERYKETKLREVSGEEANDYIS 1268
            +LATHE+HFSILRE +    Q  K     +   L    R   +   + E+        I 
Sbjct: 241  SLATHEVHFSILREVITMPGQHEKCFLCGQVGHLAAECRGPAQADNVVELPP------IH 294

Query: 1269 RQQFQFLNVWVLRDYLTHDMQVPNSTVKLDVERLIDDFVFICLFVGNDFLPHVPSLEISE 1448
            ++++QFLN+WVLR+YL  D+++ +   K++ ER++DDFVFIC FVGNDFLPH+P+LEI E
Sbjct: 295  KKKYQFLNIWVLREYLEKDLEIVDPPFKINFERIVDDFVFICFFVGNDFLPHMPTLEIRE 354

Query: 1449 GAIDLLMNVYKKEFVLMGGYLTDSYKVNLKRVEHFVQAVAYHENAIFRKRRQVDMRFQGG 1628
            GA++LLM +Y+ EF  MGGYLTD  +V L+RVEHF+Q+VA HE  IFRKR ++   ++  
Sbjct: 355  GALNLLMAIYRSEFKPMGGYLTDGGEVLLERVEHFIQSVAVHEEQIFRKRARIQQAYE-- 412

Query: 1629 SNAQRRTSDKSRKLSHAKQNNSENFWSSINXXXXXXXXXXXXXXXDKSQGSGHNATPNGA 1808
            +N +RR   +          NSE+                                    
Sbjct: 413  NNEERRKGQRE---------NSED-----------------------------------V 428

Query: 1809 STTTDNIRLGEEGWKERFYTEKFEVKTEDER-DKIRKHAVLKYIEGMCWVMHYYYEGVCS 1985
            +   D ++LGE G++ER+Y EKF  + E +  D++++  V KY+EG+CWVM YYY+GVCS
Sbjct: 429  NPYVDMVKLGEPGYRERYYAEKFREEAESKPIDQVQRDVVQKYVEGLCWVMRYYYQGVCS 488

Query: 1986 WQWFYPYHYAPFASDFLNIEHCEIHFTPGTPFKPFDQLMGVLPAASAHALPLCYRELMTD 2165
            WQWFYPYHYAPFASD   +   EI F  G PFKPFDQLMG LPAAS++ALP  Y +LMTD
Sbjct: 489  WQWFYPYHYAPFASDLKGLTEFEITFFLGQPFKPFDQLMGTLPAASSNALPKYYGDLMTD 548

Query: 2166 SSSPILDFYPTDFELDMFGKRHAWQAICKLPFIEESRLLLEIAKVEHTLTDEEKRRNSFG 2345
             +SP+  FYP DFE+DM GKR AWQ I KLPFI+E RLL E  KVE +LT+EE+ RN   
Sbjct: 549  PNSPLKYFYPKDFEIDMNGKRFAWQGIAKLPFIDERRLLAETQKVEDSLTEEERFRNRTM 608

Query: 2346 MDLLFVHISHPLAADIIIFFERNKDHPKLAKAKVKRRIDPKFSGGMNGFMYISDKPVWPL 2525
             D+++V  +HPLAA I   ++     P          IDP  SGGMNGF+ +S +  + +
Sbjct: 609  FDIIYVRETHPLAAQIAFLYQM-CTQPSTTDPSYLIPIDPAASGGMNGFLCLSQRNWYSI 667

Query: 2526 EVCSSINDMEKIAMNKVISVFYKYPTSHTHIPRPPEGVVMPGMSVRKEDIFPAPVLWHEK 2705
             V S +     I  N+V++  Y  P  H HIP PPEGV++P   ++  D  P PVLWHE 
Sbjct: 668  SVGSPVKGFNGITHNRVLNSTYLNPQYHKHIPEPPEGVIIPPKILKPYDFKPFPVLWHED 727

Query: 2706 SVVLGRLHSERP-VPNSISGSCLAKLAHRLV 2795
            +    R   +RP V  ++SGS L + AHRLV
Sbjct: 728  N--SRRQTRDRPQVHGALSGSVLGEAAHRLV 756