BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004574
         (2511 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron sp...   828   0.0  
ref|XP_003551841.1| PREDICTED: chloroplastic group IIA intron sp...   686   0.0  
ref|XP_004138635.1| PREDICTED: chloroplastic group IIA intron sp...   660   0.0  
ref|XP_004158502.1| PREDICTED: LOW QUALITY PROTEIN: chloroplasti...   659   0.0  
ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron sp...   608   e-171

>ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Vitis vinifera]
          Length = 1184

 Score =  828 bits (2139), Expect = 0.0
 Identities = 462/844 (54%), Positives = 582/844 (68%), Gaps = 31/844 (3%)
 Frame = +3

Query: 12   MSTPLYFSISSV-NTLQKPYNSSKHF----------KILSFQKP--NTPSTQFINPKFSF 152
            MS  L+ S+S + N  Q P NS+             +I SF+ P  +  +T   N     
Sbjct: 1    MSPALFLSLSPIPNHSQFPSNSNSLSNSSIRILNPQRIHSFKPPPISATTTATTNHPDHS 60

Query: 153  LSEQSLLKKNEDVKMPTAPWMKGPLLLTADNVLDLREASNKRSIKKDNDVERSDRSLTDK 332
            +S Q +   +  +KMPTAPWMKGPLLL  + VLDL +A  K+ +      E+ DRSLT+K
Sbjct: 61   ISSQPVSGTDAAIKMPTAPWMKGPLLLQPNEVLDLSKARPKK-VAGSAGAEKPDRSLTEK 119

Query: 333  VSGRRGKQVMKKIVQSVTKLERFHSFKXXXXXXXXXXVPLE-EVVCKDENVKYRGKMPWA 509
            VSG RG + MKKI+QS+ KL+  H+              +  E +  DEN +  GKMPW 
Sbjct: 120  VSGGRGAKAMKKIMQSIVKLQETHTSDETQENTEEFEFGVSLEGIGGDENSRIGGKMPWL 179

Query: 510  KAERFVFRRMKKEKVKTAAXXXXXXXXXXXXXXDAVKMTQWVKVKKAGVTQAVVDDIKMT 689
            K E+ VFRR KKEKV TAA              +AVKM +WVKVKKAGVT++VVD I M 
Sbjct: 180  KTEKVVFRRTKKEKVVTAAELTLDPMLLERLRGEAVKMRKWVKVKKAGVTESVVDQIHMV 239

Query: 690  WKRNELAMVKFDLPLCRNMDRAREILEIKTRGLVVWTKKDGHVVYRGCDYES--KLLQDL 863
            WK +ELAMVKFD+PLCRNMDRAREILEIKTRGLV+W+KKD  VVYRG +Y+S  K  Q +
Sbjct: 240  WKSDELAMVKFDMPLCRNMDRAREILEIKTRGLVIWSKKDTLVVYRGSNYQSTSKHFQKM 299

Query: 864  HSEHACVEESPEMFSVESSLLKSEDDITSS----HRADTI----RISGEEDSLLP--CMQ 1013
                    ++      +S+    EDD+T S    H + T     R  GEEDS      M+
Sbjct: 300  RPGLVAGADASNSKLNQSNF---EDDLTISEIKFHESTTGEKMGRKDGEEDSSPTGIFME 356

Query: 1014 RSLDLPSVSGTLFEREADRLLDGLGPRYVDWWWPKPLPVDADMLPEVVSGFRTPFRRCPP 1193
              +D   V+G+L+EREADRLLDGLGPR++DWW PKPLPVDAD+LPEV+ GFR PFR  PP
Sbjct: 357  EMVDSQPVNGSLYEREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGFRPPFRLSPP 416

Query: 1194 HVRPKLADDELTYLRKLARPLPTHFVLGRNKKLQGLAAAIMKLWEKSLIVKIAIKWGIPN 1373
              R KL DDELTYLRKLA  LPTHFVLGRN+KLQGLAAAI+KLWEKSLIVKIAIKWGIPN
Sbjct: 417  QTRSKLTDDELTYLRKLAYALPTHFVLGRNRKLQGLAAAILKLWEKSLIVKIAIKWGIPN 476

Query: 1374 SNSEQMAWELKNLTGGVLILRNKFFIIIYRGKDFLPQATENLVVDREAELTRCQVQEEGA 1553
            + +EQMA ELK LTGGVL+LRNKFFII+YRGKDFLP    NL+V+RE E   CQ++EE A
Sbjct: 477  TKNEQMANELKCLTGGVLLLRNKFFIILYRGKDFLPCRVANLIVEREMEFKGCQIREEDA 536

Query: 1554 RLKAIESLSVTNETVSTMSSVGTLSEFHNFQIKYGHWNNDKDKIDIQTEAEKEKLEKEMR 1733
            RLKAIE+  VT++ ++  S+ GTLSEF N + ++    +   +I+++ EAEKE+LEKE++
Sbjct: 537  RLKAIETSFVTDKPLANTSTTGTLSEFQNIETEFRGLKDGNTEIEVELEAEKERLEKELK 596

Query: 1734 KQEHKLVLLKRKIERSARELFELNSAWRISEQDADQELITEEERNCLRKMGLKMDKTLVL 1913
            KQE  L +LKRKIERSA+ L +LNSAWR ++ DAD+E+ITEEER C RK+G KMD +L+L
Sbjct: 597  KQERNLFILKRKIERSAKVLAKLNSAWRPADHDADKEMITEEERECFRKIGQKMDSSLLL 656

Query: 1914 GRRGVFDGVIGSMHQHWKHREVVKVITMQRSFSQIINTAALLEIESGGILIAVEKLRSGY 2093
            GRRGVFDGVI  +HQHWKHRE+VKVITMQRSFSQ++ TA LLE ESGG+L++++KL+ G+
Sbjct: 657  GRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGVLVSIDKLKEGH 716

Query: 2094 AIIVYRGKNYRRPLKLLPENLLTKRAALQRSLQMQRIGSLKFFAYQRQRKITNLKSRLRS 2273
            AII+YRGKNYRRP+KL+P+NLLTKR AL RSL+MQRIGSLKFFAYQRQ+ I++LK +L  
Sbjct: 717  AIIIYRGKNYRRPIKLVPKNLLTKREALNRSLEMQRIGSLKFFAYQRQQAISDLKLKLAD 776

Query: 2274 MPRTVVEVASGEFANC*RSCEQD-AFH----QHLPRVNISFCRS*PNVITYLTRRLEEVC 2438
            + +    +   E     +    D A+H    Q + R NI      P+V+  L  RL++  
Sbjct: 777  LQKGSRRIDQRESEKFTKHEPPDVAYHESYFQGVKRYNI------PHVLLQLLLRLKKTA 830

Query: 2439 ASLL 2450
              LL
Sbjct: 831  EYLL 834


>ref|XP_003551841.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Glycine max]
          Length = 712

 Score =  686 bits (1770), Expect = 0.0
 Identities = 376/752 (50%), Positives = 496/752 (65%), Gaps = 2/752 (0%)
 Frame = +3

Query: 69   NSSKHFKILSFQKPNTPSTQFINPKFSFLSEQSLLKKNEDVKMPTAPWMKGPLLLTADNV 248
            NS   F I S   PN+ +           + Q        +K PT PWMK PLLL    +
Sbjct: 13   NSYSRFHISSSLPPNSNNGH---------NHQHTSPSQVPIKSPTPPWMKVPLLLQPHEL 63

Query: 249  LDLREASNKRSIKKDNDVERSDRSLTDKVSGRRGKQVMKKIVQSVTKLERFHSFKXXXXX 428
            +DL    +K+   K    E SD++L  K    RGK+ MKKIV  V KL +  +       
Sbjct: 64   VDLSNPKSKKF--KPEKHELSDKALMGKEV--RGKRAMKKIVDRVEKLHKTQNSNETRVD 119

Query: 429  XXXXXV--PLEEVVCKDENVKYRGKMPWAKAERFVFRRMKKEKVKTAAXXXXXXXXXXXX 602
                       E++ ++E V+ +G+MPW K E+F F ++K+EK  TAA            
Sbjct: 120  SLNVENFGGYLEILKENEEVRSKGRMPWEKDEKFGFVKVKREKAVTAAELTLDKALLRRL 179

Query: 603  XXDAVKMTQWVKVKKAGVTQAVVDDIKMTWKRNELAMVKFDLPLCRNMDRAREILEIKTR 782
              +A +M  W+KVKKAGVTQ VVD IK TW+RNELAM+KFD+PLCRNMDRAREI+E KT 
Sbjct: 180  RNEAARMRTWIKVKKAGVTQDVVDQIKRTWRRNELAMIKFDIPLCRNMDRAREIVETKTG 239

Query: 783  GLVVWTKKDGHVVYRGCDYESKLLQDLHSEHACVEESPEMFSVESSLLKSEDDITSSHRA 962
            GLVV +KKD  VVYRGC++ S  + + +++H                             
Sbjct: 240  GLVVLSKKDFLVVYRGCNHHSSEMLNWNADH----------------------------- 270

Query: 963  DTIRISGEEDSLLPCMQRSLDLPSVSGTLFEREADRLLDGLGPRYVDWWWPKPLPVDADM 1142
                    +DS+   +Q  ++   V+G+L+ERE +RLLDGLGPR++DWW  KPLPVDAD+
Sbjct: 271  --------KDSISTGIQ-DVNCQLVNGSLYERETERLLDGLGPRFIDWWMHKPLPVDADL 321

Query: 1143 LPEVVSGFRTPFRRCPPHVRPKLADDELTYLRKLARPLPTHFVLGRNKKLQGLAAAIMKL 1322
            LPE V GF+ PFR CPPH   KL D ELTY RKLA+ LPTHFVLGRNK L+GLA+AI+KL
Sbjct: 322  LPEEVPGFQPPFRLCPPHSSAKLTDYELTYFRKLAQSLPTHFVLGRNKGLKGLASAILKL 381

Query: 1323 WEKSLIVKIAIKWGIPNSNSEQMAWELKNLTGGVLILRNKFFIIIYRGKDFLPQATENLV 1502
            WEKSLI KIAIK+GIPN+++E MA ELK LTGGVL+LRNKF+I++YRG DFLP++  +LV
Sbjct: 382  WEKSLIAKIAIKYGIPNTDNEMMANELKCLTGGVLLLRNKFYILLYRGNDFLPRSVASLV 441

Query: 1503 VDREAELTRCQVQEEGARLKAIESLSVTNETVSTMSSVGTLSEFHNFQIKYGHWNNDKDK 1682
              RE EL   Q+ EE AR+KAI++ S  +E     S+ GTL+EF   Q K     +    
Sbjct: 442  EKRELELKSRQLHEEVARMKAIQAFSPIDEVPLDTSTSGTLTEFRKIQTKLEDTKSVNVD 501

Query: 1683 IDIQTEAEKEKLEKEMRKQEHKLVLLKRKIERSARELFELNSAWRISEQDADQELITEEE 1862
             +IQ EAE  +LEKE+++++ +  +L +KI+RS REL +LN+AW  SEQD D E++T+EE
Sbjct: 502  SNIQLEAEICRLEKELKEEQRRAFILNKKIKRSERELSKLNAAWTPSEQDTDLEIMTDEE 561

Query: 1863 RNCLRKMGLKMDKTLVLGRRGVFDGVIGSMHQHWKHREVVKVITMQRSFSQIINTAALLE 2042
            R C RK+GLKM  +L+LGRRG+FDGV+  +HQHWKHREVVKVITMQ+ FSQ+INTA +LE
Sbjct: 562  RECFRKIGLKMQSSLLLGRRGIFDGVLEGLHQHWKHREVVKVITMQKLFSQVINTAKVLE 621

Query: 2043 IESGGILIAVEKLRSGYAIIVYRGKNYRRPLKLLPENLLTKRAALQRSLQMQRIGSLKFF 2222
             ESGGIL++V+KL+ G+AII+YRGKNY+RP   L +NLLTKR AL+RSL+MQRIGS+KFF
Sbjct: 622  TESGGILVSVDKLKEGHAIIIYRGKNYKRPSIKLAKNLLTKREALRRSLEMQRIGSMKFF 681

Query: 2223 AYQRQRKITNLKSRLRSMPRTVVEVASGEFAN 2318
            A+QR++ I+ L+ +L  + +   E+   EFAN
Sbjct: 682  AHQREQAISELEVKLADLQQK-KEIELREFAN 712


>ref|XP_004138635.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Cucumis sativus]
          Length = 760

 Score =  660 bits (1703), Expect = 0.0
 Identities = 364/747 (48%), Positives = 472/747 (63%), Gaps = 9/747 (1%)
 Frame = +3

Query: 63   PYNSSKHFKILSFQKPNTPSTQFINPKFSFLSEQSLLKKNEDVKMPTAPWMKGPLLLTAD 242
            P +   H  +L     N  S      + S L E   +  N  V + TAPWMK PL L   
Sbjct: 17   PPSFRSHSPLLHLSTHNPISATSTPSQSSVLPEPPSIS-NAAVNLRTAPWMKAPLHLQPQ 75

Query: 243  NVLD--LREASNKRSIKKDNDV-ERSDRSLTDKVSGRRGKQVMKKIVQSVTKLERFHSFK 413
               +  +  A+ KR    D    ++  R+L D    + GK  M++I +S+ KL R     
Sbjct: 76   QQEEEGVDPANPKRRNGSDGSGRDKCSRALGDSGIDKTGKYAMRRIAKSIGKLRR----- 130

Query: 414  XXXXXXXXXXVPLEEVVCKD------ENVKYRGKMPWAKAERFVFRRMKKEKVKTAAXXX 575
                      + LEEV          E    R +MPW K +  +  R  K+K  T+A   
Sbjct: 131  --NGDLGETRMKLEEVEFGGFDLEGFEESGTRRRMPWEKDDDGIVLRRMKKKTVTSAELN 188

Query: 576  XXXXXXXXXXXDAVKMTQWVKVKKAGVTQAVVDDIKMTWKRNELAMVKFDLPLCRNMDRA 755
                       +A KM +WVKV K GVTQ VV+ I+  W+RNELAM+KFD+PL RNMDRA
Sbjct: 189  LDRVLLERLKGEASKMEKWVKVNKVGVTQDVVNQIQFMWERNELAMLKFDVPLSRNMDRA 248

Query: 756  REILEIKTRGLVVWTKKDGHVVYRGCDYESKLLQDLHSEHACVEESPEMFSVESSLLKSE 935
            REI+E+KT G+VVW+KK+  VVYRGC+Y   L      +     ++P     ++    S 
Sbjct: 249  REIVEMKTGGMVVWSKKNALVVYRGCNYPLNLKHSTKKQVHISPQNPVKVETDTHFSLSG 308

Query: 936  DDITSSHRADTIRISGEEDSLLPCMQRSLDLPSVSGTLFEREADRLLDGLGPRYVDWWWP 1115
               +  +R+        E++    + R  +L  +SG+L+ERE DRLLD LGPR++DWW  
Sbjct: 309  HYESGLNRSINDNDGEWEEASSFFLIRHENLQPLSGSLYERETDRLLDDLGPRFIDWWMH 368

Query: 1116 KPLPVDADMLPEVVSGFRTPFRRCPPHVRPKLADDELTYLRKLARPLPTHFVLGRNKKLQ 1295
            KPLPVDADMLPEVV G+  PFRRCPP+ +  L D  L +LRKLA  LPTHFVLGRN+KLQ
Sbjct: 369  KPLPVDADMLPEVVPGYMPPFRRCPPYTKQNLTDAGLQHLRKLAHSLPTHFVLGRNRKLQ 428

Query: 1296 GLAAAIMKLWEKSLIVKIAIKWGIPNSNSEQMAWELKNLTGGVLILRNKFFIIIYRGKDF 1475
            GLAA+I+KLWEKS+I KIA+KWG+PN+++EQMA ELKNLTGG L+LRNKF II+YRG DF
Sbjct: 429  GLAASILKLWEKSMIAKIALKWGVPNTDNEQMALELKNLTGGTLLLRNKFVIILYRGNDF 488

Query: 1476 LPQATENLVVDREAELTRCQVQEEGARLKAIESLSVTNETVSTMSSVGTLSEFHNFQIKY 1655
            LP    + ++ RE EL R Q+ EE +RLKA E      E +      GTLS+F +  + Y
Sbjct: 489  LPVGVADSIIQREVELQRWQLHEENSRLKASEFFCFDTENMEERGKAGTLSDFKDITVGY 548

Query: 1656 GHWNNDKDKIDIQTEAEKEKLEKEMRKQEHKLVLLKRKIERSARELFELNSAWRISEQDA 1835
               +    +  +Q EAEK K+ + +R QE +L +L  K+E+S +EL +LN++WR  E DA
Sbjct: 549  EDLSTGSTESRLQAEAEKGKIIRGLRMQERRLKILNFKVEKSTKELTKLNASWRRVEPDA 608

Query: 1836 DQELITEEERNCLRKMGLKMDKTLVLGRRGVFDGVIGSMHQHWKHREVVKVITMQRSFSQ 2015
            DQELIT EER C RKMGLKMD  L LGRRGVFDGVI  +HQHWKHREVVKVITMQR+F+Q
Sbjct: 609  DQELITNEERICFRKMGLKMDSCLTLGRRGVFDGVIEGLHQHWKHREVVKVITMQRAFNQ 668

Query: 2016 IINTAALLEIESGGILIAVEKLRSGYAIIVYRGKNYRRPLKLLPENLLTKRAALQRSLQM 2195
            +  TA LLE ESGGIL++V+KL+ GYAII++RGKNY+RPL  + +NLLTKR AL RSL+M
Sbjct: 669  VNYTAKLLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEM 728

Query: 2196 QRIGSLKFFAYQRQRKITNLKSRLRSM 2276
            QRIGSLKFFA QRQ+KI  L+  L ++
Sbjct: 729  QRIGSLKFFANQRQQKIYELQHELENV 755


>ref|XP_004158502.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
            splicing facilitator CRS1, chloroplastic-like [Cucumis
            sativus]
          Length = 760

 Score =  659 bits (1701), Expect = 0.0
 Identities = 363/747 (48%), Positives = 471/747 (63%), Gaps = 9/747 (1%)
 Frame = +3

Query: 63   PYNSSKHFKILSFQKPNTPSTQFINPKFSFLSEQSLLKKNEDVKMPTAPWMKGPLLLTAD 242
            P +   H  +L     N  S      + S L E   +  N  V + TAPWMK PL L   
Sbjct: 17   PPSFRSHSPLLHLSTHNPISATSTPSQSSVLPEPPSIS-NAAVNLRTAPWMKAPLHLQPQ 75

Query: 243  NVLD--LREASNKRSIKKDNDV-ERSDRSLTDKVSGRRGKQVMKKIVQSVTKLERFHSFK 413
               +  +  A+ KR    D    ++  R+L D    + GK  M++I +S+ KL R     
Sbjct: 76   QQEEEGVDPANPKRRNGSDGSGRDKCSRALGDSGIDKTGKYAMRRIAKSIGKLRR----- 130

Query: 414  XXXXXXXXXXVPLEEVVCKD------ENVKYRGKMPWAKAERFVFRRMKKEKVKTAAXXX 575
                      + LEEV   D      E    R +MPW K +  +  R  K+K  T+A   
Sbjct: 131  --NGDLGETRMKLEEVEFGDFDLEGFEESGTRRRMPWEKDDDGIVLRRMKKKTVTSAELN 188

Query: 576  XXXXXXXXXXXDAVKMTQWVKVKKAGVTQAVVDDIKMTWKRNELAMVKFDLPLCRNMDRA 755
                       +A KM +WVKV K GVTQ VV+ I+  W+RNELAM+KFD+PL RNMDRA
Sbjct: 189  LDRVLLERLKGEASKMEKWVKVNKVGVTQDVVNQIQFMWERNELAMLKFDVPLSRNMDRA 248

Query: 756  REILEIKTRGLVVWTKKDGHVVYRGCDYESKLLQDLHSEHACVEESPEMFSVESSLLKSE 935
            REI+E+KT G+VVW+KK+  V+YRGC+Y   L      +     ++P     ++    S 
Sbjct: 249  REIVEMKTGGMVVWSKKNALVIYRGCNYPLNLKHSTKKQVHISPQNPVKVETDTHFSLSG 308

Query: 936  DDITSSHRADTIRISGEEDSLLPCMQRSLDLPSVSGTLFEREADRLLDGLGPRYVDWWWP 1115
               +  +R+        E++    + R  +L  +SG+L+ERE DRLLD LGPR++DWW  
Sbjct: 309  HYESGLNRSINDNDGEWEEASSFFLIRHENLQPLSGSLYERETDRLLDDLGPRFIDWWMH 368

Query: 1116 KPLPVDADMLPEVVSGFRTPFRRCPPHVRPKLADDELTYLRKLARPLPTHFVLGRNKKLQ 1295
            KPLPVDADML EVV G+  PFRRCPP+ +  L D  L +LRKLA  LPTHFVLGRN+KLQ
Sbjct: 369  KPLPVDADMLQEVVPGYMPPFRRCPPYTKQNLTDAGLQHLRKLAHSLPTHFVLGRNRKLQ 428

Query: 1296 GLAAAIMKLWEKSLIVKIAIKWGIPNSNSEQMAWELKNLTGGVLILRNKFFIIIYRGKDF 1475
            GLAA+I+KLWEKS+I KIA+KWG+PN+++EQMA ELKNLTGG L+LRNKF II+YRG DF
Sbjct: 429  GLAASILKLWEKSMIAKIALKWGVPNTDNEQMALELKNLTGGTLLLRNKFVIILYRGNDF 488

Query: 1476 LPQATENLVVDREAELTRCQVQEEGARLKAIESLSVTNETVSTMSSVGTLSEFHNFQIKY 1655
            LP    + ++ RE EL R Q+ EE +RLKA E      E +      GTLS+F +  + Y
Sbjct: 489  LPVGVADSIIQREVELQRWQLHEENSRLKASEFFCFDTENMEERGKAGTLSDFKDITVGY 548

Query: 1656 GHWNNDKDKIDIQTEAEKEKLEKEMRKQEHKLVLLKRKIERSARELFELNSAWRISEQDA 1835
               +    +  +Q EAEK K+ + +R QE +L +L  K+E+S +EL +LN++WR  E DA
Sbjct: 549  EDLSTGSTESRLQAEAEKXKIIRGLRMQERRLKILNFKVEKSTKELTKLNASWRRVEPDA 608

Query: 1836 DQELITEEERNCLRKMGLKMDKTLVLGRRGVFDGVIGSMHQHWKHREVVKVITMQRSFSQ 2015
            DQELIT EER C RKMGLKMD  L LGRRGVFDGVI  +HQHWKHREVVKVITMQR+F+Q
Sbjct: 609  DQELITNEERICFRKMGLKMDSCLTLGRRGVFDGVIEGLHQHWKHREVVKVITMQRAFNQ 668

Query: 2016 IINTAALLEIESGGILIAVEKLRSGYAIIVYRGKNYRRPLKLLPENLLTKRAALQRSLQM 2195
            +  TA LLE ESGGIL++V+KL+ GYAII++RGKNY+RPL  + +NLLTKR AL RSL+M
Sbjct: 669  VNYTAKLLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEM 728

Query: 2196 QRIGSLKFFAYQRQRKITNLKSRLRSM 2276
            QRIGSLKFFA QRQ+KI  L+  L  +
Sbjct: 729  QRIGSLKFFANQRQQKIYELQHELEKV 755


>ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Brachypodium distachyon]
          Length = 730

 Score =  608 bits (1569), Expect = e-171
 Identities = 350/724 (48%), Positives = 452/724 (62%), Gaps = 27/724 (3%)
 Frame = +3

Query: 198  PTAPWMKGPLLLTADNVLDLREASNKRSIKKDNDVERSDRS----LTDKVSGRRGKQVMK 365
            P  PW+ GP   T+       EA  K     D   +RS+ S    LT  V G R ++ + 
Sbjct: 17   PPPPWLHGPKTPTSATPPLPIEAPPKPH--NDPKPQRSNSSTTNPLTTGVPGGRTRRAVL 74

Query: 366  KIVQSVTKLERFHSFKXXXXXXXXXXVPL------------EEVVCKDENVKYRGK--MP 503
             I++ V  LE  +             +P             EE   KDE  K      +P
Sbjct: 75   GIIRRVRSLELSNPPNPRPRPSTSGNIPFHLPIDRPQEGQEEEEAGKDEKGKLTKSRAVP 134

Query: 504  WAKAE----RFVFRRMKKEKVKTAAXXXXXXXXXXXXXXDAVKMTQWVKVKKAGVTQAVV 671
            W+ A     + V RR KK +  T A               A  M +W + KKAGVT  VV
Sbjct: 135  WSAARDEHLKVVLRREKKVREPTRAERELGPALLERLRRAARGMDRWARAKKAGVTDEVV 194

Query: 672  DDIKMTWKRN-ELAMVKFDLPLCRNMDRAREILEIKTRGLVVWTKKDGHVVYRGCDYESK 848
            +D++  W    ELA V+   PL R MDRAREILEIKT GLVVWTK D H VYRG DY   
Sbjct: 195  EDVRSEWSSGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTKGDIHFVYRGSDY--- 251

Query: 849  LLQDLHSEHACVEESPEMFSVESSLLKSEDDITSSHRADTIRISGEEDSLLPCMQRSLDL 1028
             + ++   H  V +  ++ + +    KS  ++   H         E+DS       S+D+
Sbjct: 252  -VHNMKYSHNFVADIQKVRTPQEKY-KSNVELLGKHNGKAKGAFREKDS-------SIDI 302

Query: 1029 PS----VSGTLFEREADRLLDGLGPRYVDWWWPKPLPVDADMLPEVVSGFRTPFRRCPPH 1196
             +    V GTL+ERE +RLLD LGPR++DWWW  PLPVDAD+LPEVV GF+TPFR+CPP 
Sbjct: 303  QTYEEPVKGTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVLGFKTPFRQCPPG 362

Query: 1197 VRPKLADDELTYLRKLARPLPTHFVLGRNKKLQGLAAAIMKLWEKSLIVKIAIKWGIPNS 1376
            VRP LAD+ELTYLRKLARPLP HF LGRN KLQGLAAAI+KLWEKSL+ KIA+K GI N+
Sbjct: 363  VRPTLADEELTYLRKLARPLPAHFALGRNTKLQGLAAAILKLWEKSLVAKIAVKVGIENT 422

Query: 1377 NSEQMAWELKNLTGGVLILRNKFFIIIYRGKDFLPQATENLVVDREAELTRCQVQEEGAR 1556
            N+EQMAW LK+LTGG +ILRNK FII+YRGKDFLP   +  V+  EA++   QV+EE AR
Sbjct: 423  NNEQMAWNLKHLTGGTIILRNKDFIILYRGKDFLPAGVKQSVIQHEAQVDAQQVKEEEAR 482

Query: 1557 LKAIESLSVTNETVSTMSSVGTLSEFHNFQIKYGHWNNDKDKIDIQTEAEKEKLEKEMRK 1736
            L   ESL +     S  SS GT  E+ +FQ+   H     +K  I+ EAEK +LEKE++ 
Sbjct: 483  LSGTESLQMFAGLPSVESSAGTFREYQDFQVNQAHETTINNKAMIELEAEKHRLEKELKD 542

Query: 1737 QEHKLVLLKRKIERSARELFELNSAWRISEQDADQELITEEERNCLRKMGLKMDKTLVLG 1916
            QE +L +L +KIERS + L +L+S+W  SEQ AD+EL+TEEER   RK+GLKMD+ ++LG
Sbjct: 543  QERRLFILTKKIERSNQALAKLHSSWNPSEQSADKELLTEEERMIFRKIGLKMDEHVLLG 602

Query: 1917 RRGVFDGVIGSMHQHWKHREVVKVITMQRSFSQIINTAALLEIESGGILIAVEKLRSGYA 2096
            RRGVFDGVI  +HQHWKH+E+VKVIT Q    QI  T+ LLE+E+GG+LIA +KL   +A
Sbjct: 603  RRGVFDGVIEEIHQHWKHKEIVKVITKQNQSYQITYTSMLLEVETGGVLIATQKLPHSHA 662

Query: 2097 IIVYRGKNYRRPLKLLPENLLTKRAALQRSLQMQRIGSLKFFAYQRQRKITNLKSRLRSM 2276
            II+YRGKNYRRP K  P NLLTKR AL+RS+++QR GS+K++ ++RQ+ I  L+ RL ++
Sbjct: 663  IILYRGKNYRRPEK-SPSNLLTKREALRRSVEVQRRGSMKYYVWERQKSIEELQWRLANV 721

Query: 2277 PRTV 2288
             R +
Sbjct: 722  AREI 725