BLASTX nr result

ID: Coptis21_contig00004500 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004500
         (580 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002326022.1| predicted protein [Populus trichocarpa] gi|2...    92   5e-17
ref|XP_004140113.1| PREDICTED: uncharacterized protein LOC101206...    91   1e-16
emb|CBI30660.3| unnamed protein product [Vitis vinifera]               88   9e-16
gb|AFK36827.1| unknown [Medicago truncatula]                           86   6e-15
ref|XP_002279581.1| PREDICTED: uncharacterized protein LOC100260...    86   6e-15

>ref|XP_002326022.1| predicted protein [Populus trichocarpa] gi|222862897|gb|EEF00404.1|
           predicted protein [Populus trichocarpa]
          Length = 77

 Score = 92.4 bits (228), Expect = 5e-17
 Identities = 42/77 (54%), Positives = 48/77 (62%)
 Frame = -3

Query: 416 MCCGEGDCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTLSCICPCCLCVTILVELALEL 237
           MCCG+GDCR                            L LSC+CPCCLCVT++VELALEL
Sbjct: 1   MCCGDGDCRPLGFLLGLPFAFLSLIISAVGVVIWIVGLLLSCVCPCCLCVTVIVELALEL 60

Query: 236 IKAPIHVMQWFTSKIPC 186
           IKAPIHVM+WFTS+IPC
Sbjct: 61  IKAPIHVMEWFTSQIPC 77


>ref|XP_004140113.1| PREDICTED: uncharacterized protein LOC101206994 isoform 1 [Cucumis
           sativus] gi|449444705|ref|XP_004140114.1| PREDICTED:
           uncharacterized protein LOC101206994 isoform 2 [Cucumis
           sativus] gi|449516321|ref|XP_004165195.1| PREDICTED:
           uncharacterized protein LOC101231760 [Cucumis sativus]
          Length = 77

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 41/77 (53%), Positives = 48/77 (62%)
 Frame = -3

Query: 416 MCCGEGDCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTLSCICPCCLCVTILVELALEL 237
           MCCG+GDCR                            LTL+CICPCCLC+T++VELALEL
Sbjct: 1   MCCGDGDCRPLGFLLGLPFAFVSLILSIIGVIIWIVGLTLTCICPCCLCLTVIVELALEL 60

Query: 236 IKAPIHVMQWFTSKIPC 186
           IKAP HVM+WFTS+IPC
Sbjct: 61  IKAPFHVMEWFTSQIPC 77


>emb|CBI30660.3| unnamed protein product [Vitis vinifera]
          Length = 598

 Score = 88.2 bits (217), Expect = 9e-16
 Identities = 43/87 (49%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
 Frame = -3

Query: 443 RKQTRKKESMCCGEG-DCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTLSCICPCCLCV 267
           +K+ +K E+MCCG+  +CR                            L L+CICPCCLCV
Sbjct: 512 KKKKKKAEAMCCGDDCECRPLGFLLGLPFAFLSLLLSIIGVIIWIIGLALTCICPCCLCV 571

Query: 266 TILVELALELIKAPIHVMQWFTSKIPC 186
           TI+VELAL LIKAPIHVM+WFT+KIPC
Sbjct: 572 TIIVELALGLIKAPIHVMKWFTTKIPC 598


>gb|AFK36827.1| unknown [Medicago truncatula]
          Length = 77

 Score = 85.5 bits (210), Expect = 6e-15
 Identities = 39/77 (50%), Positives = 46/77 (59%)
 Frame = -3

Query: 416 MCCGEGDCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTLSCICPCCLCVTILVELALEL 237
           MC   GDCR                            LTL+CICPCCLC+T++VELALEL
Sbjct: 1   MCNSNGDCRPLGFLLGLPFAFLCLLISIIGLIVWIVGLTLTCICPCCLCLTVIVELALEL 60

Query: 236 IKAPIHVMQWFTSKIPC 186
           +KAP+HVM+WFTSKIPC
Sbjct: 61  VKAPLHVMEWFTSKIPC 77


>ref|XP_002279581.1| PREDICTED: uncharacterized protein LOC100260766 [Vitis vinifera]
           gi|302143391|emb|CBI21952.3| unnamed protein product
           [Vitis vinifera]
          Length = 76

 Score = 85.5 bits (210), Expect = 6e-15
 Identities = 42/77 (54%), Positives = 47/77 (61%)
 Frame = -3

Query: 416 MCCGEGDCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTLSCICPCCLCVTILVELALEL 237
           MCC +GDCR                            L L+CICPCCLCVT+LVELALEL
Sbjct: 1   MCC-DGDCRPLGFLLGLPFAFLSLLISIIGVVIWIVGLLLTCICPCCLCVTVLVELALEL 59

Query: 236 IKAPIHVMQWFTSKIPC 186
           IKAPIHVM+WFTS+IPC
Sbjct: 60  IKAPIHVMEWFTSQIPC 76


Top