BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004437
         (254 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...    65   8e-09
ref|XP_004139267.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...    63   2e-08
ref|XP_002324575.1| predicted protein [Populus trichocarpa] gi|2...    61   8e-08
ref|XP_002309312.1| predicted protein [Populus trichocarpa] gi|2...    61   1e-07
ref|XP_002532501.1| 116 kD U5 small nuclear ribonucleoprotein co...    55   6e-06

>ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
           [Vitis vinifera] gi|147858113|emb|CAN81413.1|
           hypothetical protein VITISV_031170 [Vitis vinifera]
          Length = 988

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 33/65 (50%), Positives = 37/65 (56%)
 Frame = +2

Query: 59  MDDSLYDEFGNYIGPEIXXXXXXXXXXXXXXXXXXXPKPTEATDHDDEEPASNGWITASN 238
           MDDSLYDEFGNYIGPEI                    +    +D +D   ASNGWITASN
Sbjct: 1   MDDSLYDEFGNYIGPEIESDRESDGDDQDEDIPDKPDEEEMVSDVEDAVAASNGWITASN 60

Query: 239 EVDMD 253
           +VDMD
Sbjct: 61  DVDMD 65


>ref|XP_004139267.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein
           component-like [Cucumis sativus]
           gi|449493675|ref|XP_004159406.1| PREDICTED: 116 kDa U5
           small nuclear ribonucleoprotein component-like [Cucumis
           sativus]
          Length = 988

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 32/65 (49%), Positives = 36/65 (55%)
 Frame = +2

Query: 59  MDDSLYDEFGNYIGPEIXXXXXXXXXXXXXXXXXXXPKPTEATDHDDEEPASNGWITASN 238
           MDDSLYDEFGNYIGPEI                    +    +D +D   ASNGWIT SN
Sbjct: 1   MDDSLYDEFGNYIGPEIDSDKDSDIEDEDENLMEKPEEDEGVSDGEDAGGASNGWITTSN 60

Query: 239 EVDMD 253
           +VDMD
Sbjct: 61  DVDMD 65


>ref|XP_002324575.1| predicted protein [Populus trichocarpa] gi|222866009|gb|EEF03140.1|
           predicted protein [Populus trichocarpa]
          Length = 869

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 30/65 (46%), Positives = 37/65 (56%)
 Frame = +2

Query: 59  MDDSLYDEFGNYIGPEIXXXXXXXXXXXXXXXXXXXPKPTEATDHDDEEPASNGWITASN 238
           MDD+LYDEFGNYIGPEI                    +  E +D ++   ASNGW+TA N
Sbjct: 1   MDDNLYDEFGNYIGPEIESDRESDGEEEDEELPDKPHEDEEESDGEEAVHASNGWLTAPN 60

Query: 239 EVDMD 253
           +VDMD
Sbjct: 61  DVDMD 65


>ref|XP_002309312.1| predicted protein [Populus trichocarpa] gi|222855288|gb|EEE92835.1|
           predicted protein [Populus trichocarpa]
          Length = 988

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 30/65 (46%), Positives = 37/65 (56%)
 Frame = +2

Query: 59  MDDSLYDEFGNYIGPEIXXXXXXXXXXXXXXXXXXXPKPTEATDHDDEEPASNGWITASN 238
           MDD+LYDEFGNYIGPEI                    +  E +D +D   ASNGW+ AS+
Sbjct: 1   MDDNLYDEFGNYIGPEIESDRESDGEEEDEELPDKPHEDEEESDGEDAVHASNGWLAASD 60

Query: 239 EVDMD 253
           +VDMD
Sbjct: 61  DVDMD 65


>ref|XP_002532501.1| 116 kD U5 small nuclear ribonucleoprotein component, putative
           [Ricinus communis] gi|223527776|gb|EEF29877.1| 116 kD U5
           small nuclear ribonucleoprotein component, putative
           [Ricinus communis]
          Length = 992

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 31/68 (45%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +2

Query: 59  MDDSLYDEFGNYIGPEIXXXXXXXXXXXXXXXXXXXPKPTE--ATDHDDEEPASNGWITA 232
           MDD+LYDEFGNYIGPEI                   P       +D D+E   SNGW+T 
Sbjct: 1   MDDNLYDEFGNYIGPEIESDQDSDREEEEDEDLPEKPHEDHDMVSDGDEEINGSNGWLTT 60

Query: 233 S-NEVDMD 253
           S N+VDMD
Sbjct: 61  SNNDVDMD 68