BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004235
         (663 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510922.1| 40S ribosomal protein S20, putative [Ricinus...   212   4e-53
gb|AEO32892.1| hypothetical protein [Amblyomma maculatum]             207   1e-51
gb|ABK23149.1| unknown [Picea sitchensis] gi|116783946|gb|ABK231...   207   1e-51
ref|XP_002265347.1| PREDICTED: 40S ribosomal protein S20-2 isofo...   204   1e-50
ref|NP_201036.1| 40S ribosomal protein S20-1 [Arabidopsis thalia...   204   2e-50

>ref|XP_002510922.1| 40S ribosomal protein S20, putative [Ricinus communis]
           gi|223550037|gb|EEF51524.1| 40S ribosomal protein S20,
           putative [Ricinus communis]
          Length = 124

 Score =  212 bits (540), Expect = 4e-53
 Identities = 108/121 (89%), Positives = 113/121 (93%)
 Frame = +3

Query: 93  AAYGAMKPAKAGFEEPPKDEHRIRITLSSKNVKNLEKVCADLVRGAKEKLLRVKGPVRMP 272
           AAYGAMKPAKAG EE P+  H+IRITLSSKNVKNLEKVCADLVRGAK+K LRVKGPVRMP
Sbjct: 3   AAYGAMKPAKAGLEESPEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 62

Query: 273 TKVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLVSSSEVVKQITSITIEPGVEVEVTIA 452
           TKVL ITTRKSPCGEGTNT+DRFELRVHKRVIDL SS +VVKQITSITIEPGVEVEVTIA
Sbjct: 63  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 122

Query: 453 D 455
           D
Sbjct: 123 D 123


>gb|AEO32892.1| hypothetical protein [Amblyomma maculatum]
          Length = 154

 Score =  207 bits (528), Expect = 1e-51
 Identities = 111/140 (79%), Positives = 115/140 (82%)
 Frame = +3

Query: 39  ISQSLSVV**INLSIMATAAYGAMKPAKAGFEEPPKDEHRIRITLSSKNVKNLEKVCADL 218
           IS S S      L   +T AY AMKPAK G EE  +  HRIRITLSSKNVKNLEKVCADL
Sbjct: 15  ISNSSSPAAEAELEKGSTMAYAAMKPAKQGLEESQEQLHRIRITLSSKNVKNLEKVCADL 74

Query: 219 VRGAKEKLLRVKGPVRMPTKVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLVSSSEVVK 398
           VRG K+K L VKGPVRMPTKVL ITTRKSPCGEGTNT+DRFELRVHKRVIDL SS EVVK
Sbjct: 75  VRGGKDKQLTVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLTSSPEVVK 134

Query: 399 QITSITIEPGVEVEVTIADP 458
           QITSITIEPGVEVEVTIADP
Sbjct: 135 QITSITIEPGVEVEVTIADP 154


>gb|ABK23149.1| unknown [Picea sitchensis] gi|116783946|gb|ABK23153.1| unknown
           [Picea sitchensis] gi|116790874|gb|ABK25771.1| unknown
           [Picea sitchensis] gi|148906889|gb|ABR16590.1| unknown
           [Picea sitchensis] gi|148908303|gb|ABR17265.1| unknown
           [Picea sitchensis]
          Length = 122

 Score =  207 bits (527), Expect = 1e-51
 Identities = 105/120 (87%), Positives = 111/120 (92%)
 Frame = +3

Query: 96  AYGAMKPAKAGFEEPPKDEHRIRITLSSKNVKNLEKVCADLVRGAKEKLLRVKGPVRMPT 275
           A G MKP KAG E+P +D HRIRITLSSKNVKNLEKVCADLVRGAK+K L+VKGPVRMPT
Sbjct: 2   AMGMMKPMKAGLEDPQEDLHRIRITLSSKNVKNLEKVCADLVRGAKDKRLKVKGPVRMPT 61

Query: 276 KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLVSSSEVVKQITSITIEPGVEVEVTIAD 455
           KVL  TTRKSPCGEGTNT+DRFELRVHKR+IDLVSSSEVVKQITSITIEPGVEVEVTIAD
Sbjct: 62  KVLNHTTRKSPCGEGTNTWDRFELRVHKRIIDLVSSSEVVKQITSITIEPGVEVEVTIAD 121


>ref|XP_002265347.1| PREDICTED: 40S ribosomal protein S20-2 isoform 1 [Vitis vinifera]
           gi|359490182|ref|XP_003634047.1| PREDICTED: 40S
           ribosomal protein S20-2 isoform 2 [Vitis vinifera]
           gi|147777804|emb|CAN62522.1| hypothetical protein
           VITISV_002374 [Vitis vinifera]
          Length = 122

 Score =  204 bits (519), Expect = 1e-50
 Identities = 104/120 (86%), Positives = 109/120 (90%)
 Frame = +3

Query: 96  AYGAMKPAKAGFEEPPKDEHRIRITLSSKNVKNLEKVCADLVRGAKEKLLRVKGPVRMPT 275
           AY AMKP K G EEP +  H+IRITLSSKNVKNLEKVCADLVRGAK+K LRVKGPVRMPT
Sbjct: 2   AYAAMKPTKPGLEEPQEAIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61

Query: 276 KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLVSSSEVVKQITSITIEPGVEVEVTIAD 455
           KVL ITTRKSPCGEGTNT+DRFELRVHKRVIDL SS +VVKQITSITIEPGVEVEVTIAD
Sbjct: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 121


>ref|NP_201036.1| 40S ribosomal protein S20-1 [Arabidopsis thaliana]
           gi|22331606|ref|NP_190089.2| 40S ribosomal protein S20-1
           [Arabidopsis thaliana] gi|145334871|ref|NP_001078781.1|
           40S ribosomal protein S20-1 [Arabidopsis thaliana]
           gi|21542443|sp|P49200.2|RS201_ARATH RecName: Full=40S
           ribosomal protein S20-1
           gi|11762182|gb|AAG40369.1|AF325017_1 AT5g62300
           [Arabidopsis thaliana]
           gi|13877519|gb|AAK43837.1|AF370460_1 40S ribosomal
           protein S20 [Arabidopsis thaliana]
           gi|20465624|gb|AAM20143.1| putative 40S ribsomomal
           protein [Arabidopsis thaliana]
           gi|21281054|gb|AAM45072.1| putative 40S ribsomomal
           protein [Arabidopsis thaliana]
           gi|21553799|gb|AAM62892.1| ribosomal protein S20-like
           protein [Arabidopsis thaliana]
           gi|332010210|gb|AED97593.1| 40S ribosomal protein S20-1
           [Arabidopsis thaliana] gi|332010211|gb|AED97594.1| 40S
           ribosomal protein S20-1 [Arabidopsis thaliana]
           gi|332644460|gb|AEE77981.1| 40S ribosomal protein S20-1
           [Arabidopsis thaliana]
          Length = 124

 Score =  204 bits (518), Expect = 2e-50
 Identities = 106/124 (85%), Positives = 112/124 (90%)
 Frame = +3

Query: 84  MATAAYGAMKPAKAGFEEPPKDEHRIRITLSSKNVKNLEKVCADLVRGAKEKLLRVKGPV 263
           MATA Y  MKP KAG EEP +  H+IRITLSSKNVKNLEKVC DLVRGAK+K LRVKGPV
Sbjct: 1   MATA-YQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPV 59

Query: 264 RMPTKVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLVSSSEVVKQITSITIEPGVEVEV 443
           RMPTKVLKITTRK+PCGEGTNT+DRFELRVHKRVIDL SS +VVKQITSITIEPGVEVEV
Sbjct: 60  RMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEV 119

Query: 444 TIAD 455
           TIAD
Sbjct: 120 TIAD 123